DK955275
Clone id TST39A01NGRL0022_K13
Library
Length 339
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_K13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
ACATATGCTCCCACGTCTCATGCCCTCCTCCCGCGAGCCTGCATATCCTGCGATTGCAGT
GATTTGACAACTGTTGCTGAGGAGCCAAGCTGCTGCTTGCATGGCTCCCCTGCGCTTCCT
TTCTCTTCACCTGAAGCACGTGGCCAAGCTTGCCTTCCATCCCCTCATCTCCCAACATGC
CTCCCATATCCTCCTCCTCACCCTCTCCTTCATCTCCCTCTCCTCCTCAGCCAAACAGGC
TGCATCCAACCTCTTCCACCACCTTCGCCACCACCTCGATTCCCCTCACCTCATCCTTCT
CGCCCTGTCTACCTGGTTGACTTCCCCTGCTACCTCCCC
■■Homology search results ■■ -
sp_hit_id P0C5W0
Definition sp|P0C5W0|PNM6B_HUMAN Paraneoplastic antigen-like protein 6B OS=Homo sapiens
Align length 53
Score (bit) 32.0
E-value 0.98
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955275|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_K13, 5'
(339 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0C5W0|PNM6B_HUMAN Paraneoplastic antigen-like protein 6B OS=... 32 0.98
sp|Q96A40|PNM6A_HUMAN Paraneoplastic antigen-like protein 6A OS=... 30 4.9

>sp|P0C5W0|PNM6B_HUMAN Paraneoplastic antigen-like protein 6B
OS=Homo sapiens GN=PNMA6B PE=2 SV=1
Length = 399

Score = 32.0 bits (71), Expect = 0.98
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1

Query: 171 EMRGWKASLATCFR*RERKRRGAMQAAAWLLSNSCQITAIAGYAGSREEGMRR 13
E W+ASLA R + ++ GA A + S ++ A+ G G EG+R+
Sbjct: 324 ESEAWEASLARSVRAQTQEGAGARAGAQAVARASTKVEAVPGGPGREPEGLRQ 376


>sp|Q96A40|PNM6A_HUMAN Paraneoplastic antigen-like protein 6A
OS=Homo sapiens GN=PNMA6A PE=2 SV=1
Length = 399

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1

Query: 171 EMRGWKASLATCFR*RERKRRGAMQAAAWLLSNSCQITAIAGYAGSREEGM 19
E W+ASLA R + ++ GA A + S ++ A+ G G EG+
Sbjct: 324 ESEAWEASLARSVRAQTQEGAGARAGAQAVARASTKVEAVPGGPGREPEGL 374


tr_hit_id Q143K2
Definition tr|Q143K2|Q143K2_BURXL Cobalamin-5'-phosphate synthase OS=Burkholderia xenovorans (strain LB400)
Align length 38
Score (bit) 32.7
E-value 9.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955275|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_K13, 5'
(339 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q143K2|Q143K2_BURXL Cobalamin-5'-phosphate synthase OS=Burkho... 33 9.3

>tr|Q143K2|Q143K2_BURXL Cobalamin-5'-phosphate synthase
OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A0949
PE=4 SV=1
Length = 258

Score = 32.7 bits (73), Expect = 9.3
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2

Query: 14 RLMPSSREPAYPAIAVI*QLLLRSQAAACMAPLRFLSL 127
R+M SR A+ AIA++ L L+ QA A M PLR SL
Sbjct: 105 RIMHDSRIGAFGAIALVMALALKWQALAAMPPLRAASL 142