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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955294
Clone id TST39A01NGRL0022_L11
Library
Length 581
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_L11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATCTGAAGGTCCATTTCATGGCTCCCGCCTGCCCATCTGAGGGTCCATGTCATCTCTGAT
GAGGCTCCCGCCTGCCCATTTGTATATTAAAACGCGTCCGACATTGCAGGTTTTCGAGCA
TTCCGCCATAGCCCACGAGCATCAGACGGAGGCTAGCGTGTATTCTAGCTGTGAAAGCTG
ATTAATAATTCCACACTCTCAGCAGTTTATTGAGCTGATTCCAAGAACATACCCCTCCCC
TCACACACATACACACACACACACACACGCACACTCTCACGCATGCACGGACACGTGCTC
GGCCGTTGTCTCTCTCTCAAGTTGGTCTGAATTGTCATACACGTTGAAATCCACATCAAC
GGCTGGTTATCCAGCAATCCGTATGCCAAAAACACACTCCTCCCGGTTCAATTCTTCCCA
GCTTGTCACTCTTTACATGAGCTATTGGAAGTGTCGGAAACATCTCAATCCACTGCTAGA
GGTTTATTTGAAACGATCCTCAACGGAGATTTCCAATAATCTGCAACTTCAACATCAGCA
AGTTCTCAAAGCATGCAGCCTTCAAACAGATCTTCACTCTC
■■Homology search results ■■ -
sp_hit_id Q54BD4
Definition sp|Q54BD4|STATC_DICDI Signal transducer and activator of transcription C OS=Dictyostelium discoideum
Align length 49
Score (bit) 32.7
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955294|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_L11, 5'
         (581 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54BD4|STATC_DICDI Signal transducer and activator of transcr...    33   1.3  
sp|P49422|DNLJ_THESC DNA ligase OS=Thermus scotoductus GN=ligA P...    32   3.0  
sp|Q4PBP6|NST1_USTMA Stress response protein NST1 OS=Ustilago ma...    30   8.7  
sp|Q96N68|CR015_HUMAN Uncharacterized protein C18orf15 OS=Homo s...    30   8.7  

>sp|Q54BD4|STATC_DICDI Signal transducer and activator of
           transcription C OS=Dictyostelium discoideum GN=dstC PE=1
           SV=1
          Length = 931

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 178 LINNSTLSAVY*ADSKNIPLPSHTYTHTHTRTLSRMHGHVLGRCLSLKL 324
           +I  + LS++   ++ N+PLP H   +T    + + H  ++  CL L L
Sbjct: 434 IIEPNILSSIQHCNNNNLPLPDHLLINTPYGNVLQPHQQIINECLKLHL 482


>sp|P49422|DNLJ_THESC DNA ligase OS=Thermus scotoductus GN=ligA PE=1
           SV=1
          Length = 674

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 430 SLHELLEVSETSQSTARGLFETILNGDF 513
           SL ELL+V E  + TARG++ET+ +  F
Sbjct: 540 SLEELLQVEEVGELTARGIYETLQDPAF 567


>sp|Q4PBP6|NST1_USTMA Stress response protein NST1 OS=Ustilago
           maydis GN=NST1 PE=3 SV=1
          Length = 1520

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 241 SHTYTHTHTRTLSRMHGHVLGRCLSL 318
           +HT+THTHT      H H  GR  SL
Sbjct: 626 THTHTHTHTHAHQHPHPHPHGRKASL 651


>sp|Q96N68|CR015_HUMAN Uncharacterized protein C18orf15 OS=Homo
           sapiens GN=C18orf15 PE=2 SV=1
          Length = 181

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 293 CPCMRESVRVCVCVYVC 243
           C CM   V VC CVYVC
Sbjct: 130 CACMCVCVHVCACVYVC 146
tr_hit_id A9UNW9
Definition tr|A9UNW9|A9UNW9_MONBE Predicted protein OS=Monosiga brevicollis
Align length 32
Score (bit) 38.5
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955294|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_L11, 5'
         (581 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9UNW9|A9UNW9_MONBE Predicted protein OS=Monosiga brevicollis...    39   0.27 
tr|A8JEL6|A8JEL6_CHLRE Predicted protein (Fragment) OS=Chlamydom...    36   1.4  
tr|Q4RP96|Q4RP96_TETNG Chromosome 1 SCAF15008, whole genome shot...    35   3.0  
tr|A2PZX5|A2PZX5_9VIRU GfV-C9-ORF1 OS=Glypta fumiferanae ichnovi...    35   3.0  
tr|A8XKX4|A8XKX4_CAEBR Putative uncharacterized protein OS=Caeno...    35   3.0  
tr|Q4SZ14|Q4SZ14_TETNG Chromosome 2 SCAF11863, whole genome shot...    35   4.0  
tr|Q4RNJ2|Q4RNJ2_TETNG Chromosome 21 SCAF15012, whole genome sho...    34   5.2  
tr|B5FVE4|B5FVE4_YARLI YALI0D09333p OS=Yarrowia lipolytica GN=YA...    34   5.2  
tr|A9V7B0|A9V7B0_MONBE Predicted protein OS=Monosiga brevicollis...    34   6.8  
tr|Q6Q121|Q6Q121_ASPFU Chi100 OS=Aspergillus fumigatus PE=2 SV=1       34   6.8  
tr|Q4T9W9|Q4T9W9_TETNG Chromosome undetermined SCAF7485, whole g...    33   8.8  
tr|Q8IWX3|Q8IWX3_MOUSE SPOT2 OS=Mus musculus GN=Dbpht2 PE=2 SV=1       33   8.8  

>tr|A9UNW9|A9UNW9_MONBE Predicted protein OS=Monosiga brevicollis
           GN=30739 PE=4 SV=1
          Length = 326

 Score = 38.5 bits (88), Expect = 0.27
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = +1

Query: 229 IPLPSHTYTHTHTRTLSRMHGHVLGRCLSLKL 324
           IP+  HT+THTHT T +  H H L   LSL L
Sbjct: 147 IPIIPHTHTHTHTHTHTHTHTHTLSLSLSLSL 178


>tr|A8JEL6|A8JEL6_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_107449 PE=4
           SV=1
          Length = 318

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
 Frame = -1

Query: 359 LMWISTCMTIQTNLR---------ERQRPSTCPCMRESVRVCVCVYVCEGRG 231
           L+W + C T   ++          E+Q    C C+   V VCVCVYVC  RG
Sbjct: 207 LVWNTFCNTFHKDIHLGAGPRGGFEKQCVCVCVCVCVCVCVCVCVYVCARRG 258


>tr|Q4RP96|Q4RP96_TETNG Chromosome 1 SCAF15008, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00031210001 PE=4 SV=1
          Length = 263

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 232 PLPSHTYTHTHTRTLSRMHGHVLGRCL 312
           P P HT+TH+HT T    H H LG  L
Sbjct: 128 PPPPHTHTHSHTHTHGHTHTHTLGSLL 154


>tr|A2PZX5|A2PZX5_9VIRU GfV-C9-ORF1 OS=Glypta fumiferanae ichnovirus
           PE=4 SV=1
          Length = 197

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -1

Query: 299 STCPCMRESVRVCVCVYVC 243
           S CPC+R SV VCVCV VC
Sbjct: 48  SVCPCVRVSVCVCVCVCVC 66


>tr|A8XKX4|A8XKX4_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG14893 PE=4 SV=2
          Length = 521

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 362 PLMWISTCMTIQTNLRERQRPSTCPCMRESVRVCVCVYVCEGRGMFLESA 213
           P +  S C +++ ++R   RPS CP +R SV   VC  VC    +++ S+
Sbjct: 373 PSVCPSVCPSVRLSVRPSVRPSVCPSVRMSVCPSVCPSVCPSVRLYVCSS 422


>tr|Q4SZ14|Q4SZ14_TETNG Chromosome 2 SCAF11863, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00010062001
           PE=4 SV=1
          Length = 522

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 217 DSKNIPLPSHTYTHTHTRTLSRMHGH 294
           + K++  P+HT+THTHT T +  H H
Sbjct: 189 NDKHVKTPTHTHTHTHTHTHTHTHTH 214


>tr|Q4RNJ2|Q4RNJ2_TETNG Chromosome 21 SCAF15012, whole genome
           shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00031528001 PE=4 SV=1
          Length = 107

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 232 PLPSHTYTHTHTRTLSRMHGH 294
           P PSHT+THTHT T +  H H
Sbjct: 61  PPPSHTHTHTHTHTHTYKHSH 81


>tr|B5FVE4|B5FVE4_YARLI YALI0D09333p OS=Yarrowia lipolytica
           GN=YALI0D09333g PE=4 SV=1
          Length = 96

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 223 KNIPLPSHTYTHTHTRTLSRMHGH 294
           K  P  +HT+THTHT TL+  H H
Sbjct: 68  KTHPFGTHTHTHTHTHTLTHTHTH 91


>tr|A9V7B0|A9V7B0_MONBE Predicted protein OS=Monosiga brevicollis
           GN=28136 PE=4 SV=1
          Length = 198

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 181 INNSTLSAVY*ADSKNIPLPSHTYTHTHTRTLSRMHGHVLGRCLSL 318
           ++N+   A   A +  +P  +HT+THTHTR+LS      L   LSL
Sbjct: 139 VHNAPQRATQRARNAALPFHTHTHTHTHTRSLSLSLSLSLSLSLSL 184



 Score = 33.5 bits (75), Expect = 8.8
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +1

Query: 220 SKNIPLPSHTYTHTHTRTLSRMHGHVLGRCLSLKL 324
           ++N  LP HT+THTHT T S      L   LSL L
Sbjct: 150 ARNAALPFHTHTHTHTHTRSLSLSLSLSLSLSLSL 184


>tr|Q6Q121|Q6Q121_ASPFU Chi100 OS=Aspergillus fumigatus PE=2 SV=1
          Length = 1033

 Score = 33.9 bits (76), Expect = 6.8
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 229  IPLPSHTYTHTHTRTLSRMHGHVLGRCLSLKL 324
            I +P   YTHTHT T +  H H L   LSL L
Sbjct: 984  ITIPPCEYTHTHTHTHTHTHTHSLSLSLSLSL 1015