DK955295 [AcEST]

DK955295
Clone id	TST39A01NGRL0022_L12
Library	TST39
Length	623
Definition	Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_L12. 5' end sequence.
Accession	DK955295
Tissue type	prothallia with plantlets
Developmental stage	gametophytes with sporophytes
Contig ID	CL3531Contig1
Sequence	GGCGGCCAGTCCAGACTCCAGAATTCTGCAGTAATTTGAGTTCACCTAGGTTTTTAATCA CTGGCTATTATCCTTAGCAGACCTTTGCCTCTGCAGGCCTACCGCATTGCAGTTATGTCA TTGAGCAAGAATCTTGAAAGTTCTCGCGCCGCCTCTGTGGGGACTTACGCAAGTTACGCT AGCTGAATTTTAGCCTTAAGGTCTGCTTCGACTTGCATGCGCGCTCAAATCCATTTTTCC TCTTTGCAGGGGCTTCTGGCTATGGTGAATGCGCTACGGTCGTGGGCTCCTGAAAGCATT TTGCCATGTTGTAGCAGTAATTCAGCTCGTTTCAGTGTTACAATGAGCAGAATGAAGGTT TTCTAGCTTGCCTTGAGGTGAACTAACAAGTAAATCTCAAAGAGAAGGCACCACTAGCTT CAGCTGGTAGCTGACCTGCTCCATTGCAGAGAGGCTCACACAGAAGTCTCTTTTGCGTGA AACGCCTGGATATGAGCTTGGCTTCTCAGCCTTGATGGCAGCGAGGTCTCCATTGCGTAG GCAGGCAGCCTCTCCTGCAGCAGGCGCGCCAGCTGCCCCCAGGCCTCTCAAACTAGTGGA GACTGTGAATTCTGAGGGCTCAT
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	A1JPT0
Definition	sp\|A1JPT0\|SPRT_YERE8 Protein sprT OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)
Align length	64
Score (bit)	30.4
E-value	7.7
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK955295\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_L12, 5' (623 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|A1JPT0\|SPRT_YERE8 Protein sprT OS=Yersinia enterocolitica ser... 30 7.7 >sp\|A1JPT0\|SPRT_YERE8 Protein sprT OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=sprT PE=3 SV=1 Length = 170 Score = 30.4 bits (67), Expect = 7.7 Identities = 18/64 (28%), Positives = 30/64 (46%) Frame = +1 Query: 283 WAPESILPCCSSNSARFSVTMSRMKVFLALRTNKISKRRHHLQLVADLLHCREAHT 462 W E +L +S + +F+VT R K F + ++ RRH+ +Q CRE Sbjct: 101 WMMEHVLQVPASRTHQFAVTSVRSKTFNYQCKCQQHALTIRRHNKVQRGESEYRCRECGE 160 Query: 463 EVSF 474 ++ F Sbjct: 161 KLQF 164
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q2JB13
Definition	tr\|Q2JB13\|Q2JB13_FRASC Metal-dependent hydrolase OS=Frankia sp. (strain CcI3)
Align length	21
Score (bit)	36.6
E-value	1.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK955295\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_L12, 5' (623 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q2JB13\|Q2JB13_FRASC Metal-dependent hydrolase OS=Frankia sp. ... 37 1.2 >tr\|Q2JB13\|Q2JB13_FRASC Metal-dependent hydrolase OS=Frankia sp. (strain CcI3) GN=Francci3_2157 PE=4 SV=1 Length = 589 Score = 36.6 bits (83), Expect = 1.2 Identities = 14/21 (66%), Positives = 14/21 (66%) Frame = -2 Query: 580 GGSWRACCRRGCLPTQWRPRC 518 G W ACCRR C P WRPRC Sbjct: 162 GSWWPACCRR-CCPRSWRPRC 181