DK955302 |
Clone id |
TST39A01NGRL0022_L19 |
Library |
TST39 |
Length |
572 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_L19. 5' end sequence. |
Accession |
DK955302 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL64Contig1 |
Sequence |
CTCCAGGAACGTTTACCAATCAGCTTCAGAACACGTTTTGTGAGCCTCGGCTCTTGATTT TGACAGACCCACGTACTGATCATCAGCCTATCAAAGAGGCTGCGCTTGGAAACATCCCTA TTATTGCATTTTGTGACACAGATTCCCCCATGCGCCATGTGGACATTGGTATCCCTGCTA ATAACAAGGGGAAGCACAGTATCGGTTGTCTTTTTTGGATGCTAGCTCGCATGGTTCTCC AGATGAGGGGAACTATTTCTCCACGCCAGCCGTGGGATGTCATGGTGGATCTGTTCTTCT ATCGTGAGCCAGAGGAAGCCAAGGAGCGTGAGGAGGAGGAAGGTGCTGCACCAGAATTTG CACCTACAGAGTATAATGCGCCTCCTACAATTGCTGCCGTCGCAGCAGCTCCTGACCAAT GGGGTGAGGGAGGTGATGCTGGAAACTGGGAGCCAGCAGTGCCAGCCGCAGCAGCTGCTG CGGTGCAGGCCCCTGCCCAAGAGTGGACTGGAGCTGCTGCTCCTGCCCAAGGATGGGATG CTGCTCCCTGCTCCTGCACCTGCCCCTGCCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ZSR8 |
Definition |
sp|Q9ZSR8|RSSA_BRANA 40S ribosomal protein SA OS=Brassica napus |
Align length |
101 |
Score (bit) |
195.0 |
E-value |
2.0e-49 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S9Z5 |
Definition |
tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
151 |
Score (bit) |
194.0 |
E-value |
4.0e-48 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955302|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_L19, 5' (572 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomit... 194 4e-48 tr|A9TDH1|A9TDH1_PHYPA Predicted protein OS=Physcomitrella paten... 193 5e-48 tr|A9S4V0|A9S4V0_PHYPA Predicted protein OS=Physcomitrella paten... 193 5e-48 tr|A9P891|A9P891_POPTR Putative uncharacterized protein OS=Popul... 193 6e-48 tr|A9P0C9|A9P0C9_PICSI Putative uncharacterized protein OS=Picea... 193 6e-48 tr|A9NV56|A9NV56_PICSI Putative uncharacterized protein OS=Picea... 193 6e-48 tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment) OS=Physcomit... 192 8e-48 tr|Q2V4D3|Q2V4D3_ARATH Uncharacterized protein At1g72370.2 OS=Ar... 192 1e-47 tr|A7P6D1|A7P6D1_VITVI Chromosome chr9 scaffold_7, whole genome ... 192 1e-47 tr|A5BUU4|A5BUU4_VITVI Putative uncharacterized protein OS=Vitis... 192 1e-47 tr|B7FID3|B7FID3_MEDTR Putative uncharacterized protein OS=Medic... 191 2e-47 tr|Q8H3I3|Q8H3I3_ORYSJ Os07g0616600 protein OS=Oryza sativa subs... 189 7e-47 tr|A2YNQ0|A2YNQ0_ORYSI Putative uncharacterized protein OS=Oryza... 189 7e-47 tr|A2XHR6|A2XHR6_ORYSI Putative uncharacterized protein OS=Oryza... 189 7e-47 tr|B6TIC4|B6TIC4_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 189 9e-47 tr|B6SSF3|B6SSF3_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 189 9e-47 tr|B4FZ84|B4FZ84_MAIZE Putative uncharacterized protein OS=Zea m... 189 9e-47 tr|Q94HF0|Q94HF0_ORYSA Putative 40S Ribosomal protein OS=Oryza s... 189 1e-46 tr|Q10QU9|Q10QU9_ORYSJ cDNA clone:001-007-D06, full insert seque... 189 1e-46 tr|Q10QU8|Q10QU8_ORYSJ 40S ribosomal protein SA, putative, expre... 189 1e-46 tr|A2XD89|A2XD89_ORYSI Putative uncharacterized protein OS=Oryza... 189 1e-46 tr|Q38M60|Q38M60_SOLTU Ribosome-associated protein p40-like OS=S... 187 4e-46 tr|Q308A0|Q308A0_SOLTU P40-like protein OS=Solanum tuberosum PE=... 187 4e-46 tr|B4G194|B4G194_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 187 4e-46 tr|B4FSQ4|B4FSQ4_MAIZE Putative uncharacterized protein OS=Zea m... 187 4e-46 tr|A9P906|A9P906_POPTR Putative uncharacterized protein OS=Popul... 187 5e-46 tr|A9P801|A9P801_POPTR Putative uncharacterized protein OS=Popul... 187 5e-46 tr|B6T782|B6T782_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 186 8e-46 tr|B6T6X2|B6T6X2_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 186 8e-46 tr|B4FTD2|B4FTD2_MAIZE Putative uncharacterized protein OS=Zea m... 186 8e-46
>tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_126323 PE=3 SV=1 Length = 305
Score = 194 bits (492), Expect = 4e-48 Identities = 99/151 (65%), Positives = 105/151 (69%), Gaps = 1/151 (0%) Frame = +3
Query: 3 PGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAFCDTDSPMRHVDIGIPAN 182 PGTFTNQLQNTF EPRLLILTDPRTDHQPI EAALGNIP+IAFCDTDSPM++VDI IPAN Sbjct: 97 PGTFTNQLQNTFSEPRLLILTDPRTDHQPIMEAALGNIPVIAFCDTDSPMKYVDIAIPAN 156
Query: 183 NKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXXXXXXXX 362 NKGKHSIG LFW+LARMVLQMRGTIS +PWDVMVDLFFYR Sbjct: 157 NKGKHSIGALFWLLARMVLQMRGTISAAKPWDVMVDLFFYREPDEGKDRDEEEAGAAEFA 216
Query: 363 XXXYNXXXXXXXXXXXXDQWG-EGGDAGNWE 452 Y QWG E +AG WE Sbjct: 217 AVEY---PAPALGMVGDAQWGPEAAEAGQWE 244
>tr|A9TDH1|A9TDH1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_193949 PE=3 SV=1 Length = 292
Score = 193 bits (491), Expect = 5e-48 Identities = 99/151 (65%), Positives = 104/151 (68%), Gaps = 1/151 (0%) Frame = +3
Query: 3 PGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAFCDTDSPMRHVDIGIPAN 182 PGTFTNQLQNTF EPRLLILTDPRTDHQPI EAALGNIP+IAFCDTDSPM++VDI IPAN Sbjct: 96 PGTFTNQLQNTFSEPRLLILTDPRTDHQPIMEAALGNIPVIAFCDTDSPMKYVDIAIPAN 155
Query: 183 NKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXXXXXXXX 362 NKGKHSIG LFW+LARMVLQMRGTIS PWDVMVDLFFYR Sbjct: 156 NKGKHSIGALFWLLARMVLQMRGTISAAHPWDVMVDLFFYREPDEGKDREEEEGGAAEFA 215
Query: 363 XXXYNXXXXXXXXXXXXDQWG-EGGDAGNWE 452 Y QWG E +AG WE Sbjct: 216 AVEY---AAPTLALGGDAQWGPEAAEAGQWE 243
>tr|A9S4V0|A9S4V0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_105781 PE=3 SV=1 Length = 292
Score = 193 bits (491), Expect = 5e-48 Identities = 99/151 (65%), Positives = 104/151 (68%), Gaps = 1/151 (0%) Frame = +3
Query: 3 PGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAFCDTDSPMRHVDIGIPAN 182 PGTFTNQLQNTF EPRLLILTDPRTDHQPI EAALGNIP+IAFCDTDSPM++VDI IPAN Sbjct: 96 PGTFTNQLQNTFSEPRLLILTDPRTDHQPIMEAALGNIPVIAFCDTDSPMKYVDIAIPAN 155
Query: 183 NKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXXXXXXXXXXXXXXXXXXX 362 NKGKHSIG LFW+LARMVLQMRGTIS PWDVMVDLFFYR Sbjct: 156 NKGKHSIGALFWLLARMVLQMRGTISAAHPWDVMVDLFFYREPDEGKDREEEEGGAAEFA 215
Query: 363 XXXYNXXXXXXXXXXXXDQWG-EGGDAGNWE 452 Y QWG E +AG WE Sbjct: 216 AVEY---AAPTLALGGDAQWGPEAAEAGQWE 243
>tr|A9P891|A9P891_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 312
Score = 193 bits (490), Expect = 6e-48 Identities = 91/101 (90%), Positives = 93/101 (92%) Frame = +3
Query: 3 PGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAFCDTDSPMRHVDIGIPAN 182 PGTFTNQLQ +F EPRLLILTDPRTDHQPIKEAALGNIP IAFCDTDSPMR VDIGIPAN Sbjct: 114 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRFVDIGIPAN 173
Query: 183 NKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 305 NKGKHSIGCLFW+LARMVLQMRGTI P WDVMVDLFFYR Sbjct: 174 NKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 214
>tr|A9P0C9|A9P0C9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 319
Score = 193 bits (490), Expect = 6e-48 Identities = 89/101 (88%), Positives = 94/101 (93%) Frame = +3
Query: 3 PGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAFCDTDSPMRHVDIGIPAN 182 PGTFTNQ+Q +F EPRLLILTDPRTDHQPI+EAALGNIP IAFCDTDSPM+HVDIGIPAN Sbjct: 105 PGTFTNQMQTSFNEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPAN 164
Query: 183 NKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 305 NKGKHSIGCLFWMLARMVLQMRGTI P WD+MVDLFFYR Sbjct: 165 NKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYR 205
>tr|A9NV56|A9NV56_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 319
Score = 193 bits (490), Expect = 6e-48 Identities = 89/101 (88%), Positives = 94/101 (93%) Frame = +3
Query: 3 PGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAFCDTDSPMRHVDIGIPAN 182 PGTFTNQ+Q +F EPRLLILTDPRTDHQPI+EAALGNIP IAFCDTDSPM+HVDIGIPAN Sbjct: 105 PGTFTNQMQTSFNEPRLLILTDPRTDHQPIREAALGNIPTIAFCDTDSPMKHVDIGIPAN 164
Query: 183 NKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 305 NKGKHSIGCLFWMLARMVLQMRGTI P WD+MVDLFFYR Sbjct: 165 NKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYR 205
>tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_46426 PE=3 SV=1 Length = 278
Score = 192 bits (489), Expect = 8e-48 Identities = 90/101 (89%), Positives = 94/101 (93%) Frame = +3
Query: 3 PGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAFCDTDSPMRHVDIGIPAN 182 PGTFTNQLQNTF EPRLLILTDPRTDHQPI EAALGNIP+IAFCDTDSPM++VDI IPAN Sbjct: 94 PGTFTNQLQNTFSEPRLLILTDPRTDHQPIMEAALGNIPVIAFCDTDSPMKYVDIAIPAN 153
Query: 183 NKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 305 NKGKHSIG LFW+LARMVLQMRGTIS PWDVMVDLFFYR Sbjct: 154 NKGKHSIGALFWLLARMVLQMRGTISAAHPWDVMVDLFFYR 194
>tr|Q2V4D3|Q2V4D3_ARATH Uncharacterized protein At1g72370.2 OS=Arabidopsis thaliana GN=At1g72370 PE=3 SV=1 Length = 294
Score = 192 bits (488), Expect = 1e-47 Identities = 90/101 (89%), Positives = 94/101 (93%) Frame = +3
Query: 3 PGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAFCDTDSPMRHVDIGIPAN 182 PGTFTNQ+Q +F EPRLLILTDPRTDHQPIKE ALGNIPIIAFCDTDSPMR VDIGIPAN Sbjct: 109 PGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPAN 168
Query: 183 NKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 305 NKGKHSIGCLFW+LARMVLQMRGTI+ Q WDVMVDLFFYR Sbjct: 169 NKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYR 209
>tr|A7P6D1|A7P6D1_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1 Length = 274
Score = 192 bits (487), Expect = 1e-47 Identities = 90/101 (89%), Positives = 94/101 (93%) Frame = +3
Query: 3 PGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAFCDTDSPMRHVDIGIPAN 182 PGTFTNQLQ +F EPRLLILTDPRTDHQPIKEAALGNIP IAFCDTDSPMR+VDIGIPAN Sbjct: 105 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 164
Query: 183 NKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 305 NKGKHSIGCLFW+LARMVLQMR TI+P WDVMVDLFFYR Sbjct: 165 NKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYR 205
>tr|A5BUU4|A5BUU4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015795 PE=3 SV=1 Length = 312
Score = 192 bits (487), Expect = 1e-47 Identities = 90/101 (89%), Positives = 94/101 (93%) Frame = +3
Query: 3 PGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAFCDTDSPMRHVDIGIPAN 182 PGTFTNQLQ +F EPRLLILTDPRTDHQPIKEAALGNIP IAFCDTDSPMR+VDIGIPAN Sbjct: 105 PGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPAN 164
Query: 183 NKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 305 NKGKHSIGCLFW+LARMVLQMR TI+P WDVMVDLFFYR Sbjct: 165 NKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYR 205
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