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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955319
Clone id TST39A01NGRL0022_M13
Library
Length 801
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_M13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCGCGCGCTCGTTTCTCTTCAAGGTGCGCGCGCGCGCACACACACACACACAGAAGAAG
AAGAGGAAGAGAGTTTTAACGTCGTAGGAATCTATCCCAAGAGACCTTAAAGATCTAGCC
GAGAGAGAGAGAGAGAGAGAGAGAGATTCGTTGCTTTGCATCAATCAAAGTTTTTGTACC
GTTGTTTAATCCAAGTACGAATCTATGGATGGAGGAATGGCTCAACCTCCTCCTGAACCA
GTCTCATACTTGTGTGGAGACTGTGGAGCTGATAATGCATTAAAACCCGGGGATGTGATA
CAGTGTCGAGAATGTGGATACCGTATTCTTTACAAAAAACGAACTCGACGGATTGTTCAA
TATGAGGCTCGGTAGCCTGTAGGTATTGGTACATGTACGTAATGTGGTTGCCGTCGTGCT
TGTTGCTGCTACCTCCAAGTATTCGATACAAAGATATGTGTATCTCCACTACACAATCAC
AGCATTTTCAATGATCTCCGTTGGCTCCTAGGCACGATCATCCTCTACCTAGGTCCGCTT
TCAAAACAAGTTGACAGTAGCATTGCTTAAAAAACCCCTTTTTTGCAACCGAGGAAAATC
TCAAGGATGCATGCATAGACAAAAGCTATTCCATGTTTTGGAAGCCTGGGCTATTTACCA
AATTTCAAGGGACCCAGGCAGGAAAGTCCCCTGAAATCTTAATTTATAGCTTTTAATTAA
ATTTCTTTTAAAGTTTTAGTTTTTGGAAAGTTTCCCCCCCCCCCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P48011
Definition sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe
Align length 56
Score (bit) 73.9
E-value 9.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955319|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_M13, 5'
         (764 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and II...    74   9e-13
sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and II...    70   1e-11
sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and II...    70   1e-11
sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and II...    70   1e-11
sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and II...    64   1e-09
sp|P40422|RPAB4_YEAST DNA-directed RNA polymerases I, II, and II...    56   2e-07
sp|Q3IMF0|RPOP_NATPD DNA-directed RNA polymerase subunit P OS=Na...    35   0.35 
sp|Q9HSG9|RPOP_HALSA DNA-directed RNA polymerase subunit P OS=Ha...    33   1.3  
sp|Q8ZTH0|RL40_PYRAE 50S ribosomal protein L40e OS=Pyrobaculum a...    33   2.3  
sp|Q54CS3|C508C_DICDI Probable cytochrome P450 508C1 OS=Dictyost...    32   2.9  
sp|Q4JAE8|RPOP_SULAC DNA-directed RNA polymerase subunit P OS=Su...    32   3.8  
sp|Q18KN3|RPOP_HALWD DNA-directed RNA polymerase subunit P OS=Ha...    32   3.8  
sp|Q5V1M2|RPOP_HALMA DNA-directed RNA polymerase subunit P OS=Ha...    32   5.0  
sp|Q8TYC4|RPOP_METKA DNA-directed RNA polymerase subunit P OS=Me...    31   6.5  
sp|Q6HDK0|GPR_BACHK Germination protease OS=Bacillus thuringiens...    31   6.5  
sp|Q634M0|GPR_BACCZ Germination protease OS=Bacillus cereus (str...    31   8.6  
sp|Q81LR5|GPR_BACAN Germination protease OS=Bacillus anthracis G...    31   8.6  

>sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Schizosaccharomyces pombe GN=rpc10
           PE=2 SV=2
          Length = 63

 Score = 73.9 bits (180), Expect = 9e-13
 Identities = 32/56 (57%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
 Frame = +1

Query: 211 GGMAQPPPEPVS--YLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           GG A  PP P +  YLC DCGA N ++  +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 8   GGTAFNPPRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63


>sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Mus musculus GN=Polr2k PE=2 SV=2
          Length = 58

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
 Frame = +1

Query: 223 QPPPE-PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           QPP + P+ Y+CG+C  +N +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 8   QPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=2 SV=1
          Length = 58

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
 Frame = +1

Query: 223 QPPPE-PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           QPP + P+ Y+CG+C  +N +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 8   QPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Bos taurus GN=POLR2K PE=3 SV=1
          Length = 58

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
 Frame = +1

Query: 223 QPPPE-PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           QPP + P+ Y+CG+C  +N +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 8   QPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and III
           subunit rpabc4 OS=Dictyostelium discoideum GN=polr2k
           PE=3 SV=1
          Length = 46

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 22/45 (48%), Positives = 38/45 (84%)
 Frame = +1

Query: 238 PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           P  Y+CG+CGA++ +KP + ++C++C +RI+YKKRT +++Q+EAR
Sbjct: 2   PCLYICGECGAEHEIKPKEPVKCKDCTHRIMYKKRTDKMIQFEAR 46


>sp|P40422|RPAB4_YEAST DNA-directed RNA polymerases I, II, and III
           subunit RPABC4 OS=Saccharomyces cerevisiae GN=RPC10 PE=1
           SV=1
          Length = 70

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 22/53 (41%), Positives = 36/53 (67%)
 Frame = +1

Query: 214 GMAQPPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           G +Q     + Y+C +C +  +L   D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 18  GTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70


>sp|Q3IMF0|RPOP_NATPD DNA-directed RNA polymerase subunit P
           OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
           GN=rpoP PE=3 SV=1
          Length = 44

 Score = 35.4 bits (80), Expect = 0.35
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 241 VSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYE 366
           +SY C  C  D  L     ++C  CG+R+L K+R+R I + E
Sbjct: 1   MSYKCSRCKRDVELDEYGGVRCPYCGHRVLLKERSRDIKEVE 42


>sp|Q9HSG9|RPOP_HALSA DNA-directed RNA polymerase subunit P
           OS=Halobacterium salinarium GN=rpoP PE=3 SV=1
          Length = 44

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 241 VSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRI 354
           +SY C  C  D  L     ++C  CG+R+L K+R+R +
Sbjct: 1   MSYKCSRCKRDVELDEYGGVRCPYCGHRVLLKERSRDV 38


>sp|Q8ZTH0|RL40_PYRAE 50S ribosomal protein L40e OS=Pyrobaculum
           aerophilum GN=rpl40e PE=3 SV=1
          Length = 53

 Score = 32.7 bits (73), Expect = 2.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 250 LCGDCGADNALKPGDVIQCRECGYRILYKKRTRR 351
           +C +CGA N   P D ++CR C  R L  KR R+
Sbjct: 22  ICRECGAKN---PPDAVKCRRCRSRNLRPKRFRK 52


>sp|Q54CS3|C508C_DICDI Probable cytochrome P450 508C1
           OS=Dictyostelium discoideum GN=cyp508c1 PE=3 SV=1
          Length = 495

 Score = 32.3 bits (72), Expect = 2.9
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +1

Query: 451 KICVSPLHNHSIFNDLRWLLGTIILYLGPLSKQVDSSIA*KTPFLQP--RKISRMH 612
           K+C SP+H    +N+L+ ++ + ++    + +++  S    TP++Q   ++  RMH
Sbjct: 311 KLCNSPIHQEIAYNELKKVVSSKVIIDDSIKREITLSDRPNTPYIQAIIKETMRMH 366
tr_hit_id A9U0K9
Definition tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 56
Score (bit) 114.0
E-value 7.0e-24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955319|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_M13, 5'
         (764 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella paten...   114   7e-24
tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea...   102   2e-20
tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza...   101   5e-20
tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and I...   101   5e-20
tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea...   101   6e-20
tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and I...    97   9e-19
tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene tran...    96   2e-18
tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712, who...    91   7e-17
tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza...    89   4e-16
tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and I...    87   9e-16
tr|A8ITN4|A8ITN4_CHLRE Subunit f DNA-directed RNA polymerase OS=...    80   2e-13
tr|Q01EI8|Q01EI8_OSTTA Rpc10 RPC10 subunit of RNA polymerases I,...    77   2e-12
tr|A4RSR4|A4RSR4_OSTLU RPC10 subunit of RNA polymerases I, II, a...    77   2e-12
tr|Q6GQI6|Q6GQI6_XENLA Polr2ka protein (Polr2kb protein) OS=Xeno...    74   1e-11
tr|Q28CR4|Q28CR4_XENTR Polymerase (RNA) II (DNA directed) polype...    74   1e-11
tr|B6K0B9|B6K0B9_SCHJP DNA-directed RNA polymerase I OS=Schizosa...    73   2e-11
tr|Q4SJ44|Q4SJ44_TETNG Chromosome 21 SCAF14577, whole genome sho...    72   3e-11
tr|B6KNP5|B6KNP5_TOXGO Transcription activator, putative OS=Toxo...    72   5e-11
tr|B8N130|B8N130_ASPFL Metallothionein-I gene transcription acti...    71   9e-11
tr|B5FYP8|B5FYP8_TAEGU Putative DNA directed RNA polymerase II p...    70   1e-10
tr|Q9D2S5|Q9D2S5_MOUSE Putative uncharacterized protein OS=Mus m...    70   1e-10
tr|Q8BFX0|Q8BFX0_MOUSE Putative uncharacterized protein OS=Mus m...    70   1e-10
tr|Q545V5|Q545V5_MOUSE Putative uncharacterized protein OS=Mus m...    70   1e-10
tr|Q9U3I0|Q9U3I0_CAEEL Protein F23B2.13, partially confirmed by ...    70   1e-10
tr|Q6IBD4|Q6IBD4_HUMAN POLR2K protein OS=Homo sapiens GN=POLR2K ...    70   1e-10
tr|B0CYT9|B0CYT9_LACBS Predicted protein OS=Laccaria bicolor (st...    70   1e-10
tr|A3FPP8|A3FPP8_CRYPV Transcription activator, putative (Fragme...    70   2e-10
tr|A8Y0I0|A8Y0I0_CAEBR CBR-RPB-12 protein OS=Caenorhabditis brig...    69   3e-10
tr|B6QQI0|B6QQI0_PENMA Metallothionein-I gene transcription acti...    69   3e-10
tr|A7E2K9|A7E2K9_DANRE Zgc:171795 protein OS=Danio rerio GN=zgc:...    69   5e-10

>tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_63544 PE=4 SV=1
          Length = 56

 Score =  114 bits (285), Expect = 7e-24
 Identities = 50/56 (89%), Positives = 53/56 (94%)
 Frame = +1

Query: 205 MDGGMAQPPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           MDG M+ PPPEPV+YLCGDCGADN LKPGDVIQCRECGYRILYKKRTRRIVQ+EAR
Sbjct: 1   MDGSMSAPPPEPVTYLCGDCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56


>tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 53

 Score =  102 bits (255), Expect = 2e-20
 Identities = 48/56 (85%), Positives = 51/56 (91%)
 Frame = +1

Query: 205 MDGGMAQPPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           MDG  A   PEPVSY+CGDCGA+N+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDGHAA---PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53


>tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02267 PE=4 SV=1
          Length = 52

 Score =  101 bits (252), Expect = 5e-20
 Identities = 45/47 (95%), Positives = 46/47 (97%)
 Frame = +1

Query: 232 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           PEPVSYLCGDCGA+N LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 6   PEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and III
           7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
          Length = 52

 Score =  101 bits (252), Expect = 5e-20
 Identities = 45/47 (95%), Positives = 46/47 (97%)
 Frame = +1

Query: 232 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           PEPVSYLCGDCGA+N LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 6   PEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 53

 Score =  101 bits (251), Expect = 6e-20
 Identities = 44/47 (93%), Positives = 47/47 (100%)
 Frame = +1

Query: 232 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           PEPVSY+CGDCGA+N+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 7   PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53


>tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and III
           7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
          Length = 52

 Score = 97.4 bits (241), Expect = 9e-19
 Identities = 44/47 (93%), Positives = 45/47 (95%)
 Frame = +1

Query: 232 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           PEPVSYLCGDCGA+N LKPGDVIQ RECGYRILYKKRTRRIVQYEAR
Sbjct: 6   PEPVSYLCGDCGAENTLKPGDVIQWRECGYRILYKKRTRRIVQYEAR 52


>tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene
           transcription activator (DNA directed RNA polymerase II
           polypeptide K) (Putative uncharacterized protein
           At5g41010) OS=Arabidopsis thaliana GN=At5g41010 PE=2
           SV=1
          Length = 51

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 41/49 (83%), Positives = 45/49 (91%)
 Frame = +1

Query: 226 PPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           P PEPV+Y+CGDCG +N LK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 3   PAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51


>tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004487001 PE=4 SV=1
          Length = 74

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 39/46 (84%), Positives = 41/46 (89%)
 Frame = +1

Query: 226 PPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQY 363
           P PEPVSY+CGDCG +N LKPGDVIQCRECGYRILYKKRTRR  QY
Sbjct: 3   PQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRSKQY 48


>tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18488 PE=4 SV=1
          Length = 87

 Score = 88.6 bits (218), Expect = 4e-16
 Identities = 38/40 (95%), Positives = 39/40 (97%)
 Frame = +1

Query: 232 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRR 351
           PEPVSYLCGDCGA+N LKPGDVIQCRECGYRILYKKRTRR
Sbjct: 6   PEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRR 45


>tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and III
           7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
          Length = 53

 Score = 87.4 bits (215), Expect = 9e-16
 Identities = 39/51 (76%), Positives = 46/51 (90%), Gaps = 2/51 (3%)
 Frame = +1

Query: 226 PP--PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 372
           PP  PEPV+Y+CGDCGA+N +K  DV+QCRECG+RILYKKRTRRIVQ+EAR
Sbjct: 3   PPQQPEPVTYVCGDCGAENTVKLVDVVQCRECGHRILYKKRTRRIVQFEAR 53