NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955322
Clone id TST39A01NGRL0022_M16
Library
Length 521
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_M16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAGATCTTGAGCTGTGGTCTCAAGAGAGAAGTAAAGCTGTCGAGAGAGCAGCCTATGGTT
TTACTGCCCGAGTGGAGGCAAGGATACGACTTATCAGACAAAGGCTTCATAGCAATGCGT
CTCCACCAAGAAATGGAGGGCAGTGATGTGATTGGCGATCCTGTATCCGGACCGAGTCAA
GACTTGCTTATGTACGAACAAGGATTGCTATATAGGCAAGGGAGACAGTGAAAAAGTATT
GGTAGCTGCAGGTCTAAGGAAATGGCAAAGATGAATATTGTCAAATGTGAATGTTGAGCA
TCCCATTTTATGAAATTCCTGGGATTCTACCAAGGGAAGAGCTATCGATTGTAAATGTGC
ACAATTCTGGCTTGAGGGAGAGAGTGTTCAAAACTTTGGAGGCTCTACAAGATTTGATCC
CTCACAGTATCCGGCCTCTTCTGTGCAGACTGCGACATTTGCCTTACATCCCAATTTTGT
TCTGTCAGAAAGTGGGGGGGCAATGTTGATACCTTCTGGAT
■■Homology search results ■■ -
sp_hit_id Q9SGG3
Definition sp|Q9SGG3|ALA5_ARATH Putative phospholipid-transporting ATPase 5 OS=Arabidopsis thaliana
Align length 40
Score (bit) 45.1
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955322|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_M16, 5'
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SGG3|ALA5_ARATH Putative phospholipid-transporting ATPase 5...    45   2e-04
sp|Q9LNQ4|ALA4_ARATH Putative phospholipid-transporting ATPase 4...    44   5e-04
sp|Q9SLK6|ALA6_ARATH Putative phospholipid-transporting ATPase 6...    43   0.001
sp|Q9LVK9|ALA7_ARATH Putative phospholipid-transporting ATPase 7...    40   0.005
sp|Q3SH93|LFTR_THIDA Leucyl/phenylalanyl-tRNA--protein transfera...    31   4.0  
sp|Q03558|OYE2_YEAST NADPH dehydrogenase 2 OS=Saccharomyces cere...    30   5.3  
sp|O73606|KCNG2_CHICK Potassium voltage-gated channel subfamily ...    30   5.3  
sp|Q7ZTU9|TBX2_DANRE T-box transcription factor TBX2b OS=Danio r...    30   6.9  
sp|P26630|PAX6_DANRE Paired box protein Pax[Zf-a] OS=Danio rerio...    30   9.0  

>sp|Q9SGG3|ALA5_ARATH Putative phospholipid-transporting ATPase 5
            OS=Arabidopsis thaliana GN=ALA5 PE=2 SV=1
          Length = 1228

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = +3

Query: 3    DLELWSQERSKAVERAAYGFTARVEARIRLIRQRLHSNAS 122
            D  LW++ER+KA E+   GFTARV+A+IR +R +L+   S
Sbjct: 1173 DARLWTRERTKAREKTKIGFTARVDAKIRHLRSKLNKKQS 1212


>sp|Q9LNQ4|ALA4_ARATH Putative phospholipid-transporting ATPase 4
            OS=Arabidopsis thaliana GN=ALA4 PE=2 SV=2
          Length = 1216

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 19/40 (47%), Positives = 29/40 (72%)
 Frame = +3

Query: 3    DLELWSQERSKAVERAAYGFTARVEARIRLIRQRLHSNAS 122
            D  +W++ER+KA E+   GFTARV+A+IR +R +L+   S
Sbjct: 1161 DRRMWTRERTKAREKTKIGFTARVDAKIRHLRSKLNKKQS 1200


>sp|Q9SLK6|ALA6_ARATH Putative phospholipid-transporting ATPase 6
            OS=Arabidopsis thaliana GN=ALA6 PE=1 SV=1
          Length = 1244

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 20/40 (50%), Positives = 27/40 (67%)
 Frame = +3

Query: 3    DLELWSQERSKAVERAAYGFTARVEARIRLIRQRLHSNAS 122
            D  +W +E+SKA E+   GFTARV+A+IR +R RL    S
Sbjct: 1186 DERMWKREKSKAREKTKIGFTARVDAKIRQLRGRLQRKHS 1225


>sp|Q9LVK9|ALA7_ARATH Putative phospholipid-transporting ATPase 7
            OS=Arabidopsis thaliana GN=ALA7 PE=2 SV=2
          Length = 1247

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 19/37 (51%), Positives = 26/37 (70%)
 Frame = +3

Query: 12   LWSQERSKAVERAAYGFTARVEARIRLIRQRLHSNAS 122
            +W++ERSKA E+   G TARV+A+IR +R RL    S
Sbjct: 1187 MWTRERSKAREKTKIGVTARVDAKIRQLRGRLQRKHS 1223


>sp|Q3SH93|LFTR_THIDA Leucyl/phenylalanyl-tRNA--protein transferase
           OS=Thiobacillus denitrificans (strain ATCC 25259) GN=aat
           PE=3 SV=1
          Length = 228

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 380 LPQARIVHIYNR*LFPW*NPRNFIKW 303
           L Q R++  Y   +FPW NPR  I+W
Sbjct: 31  LSQERLLDAYRHGIFPWFNPREPIQW 56


>sp|Q03558|OYE2_YEAST NADPH dehydrogenase 2 OS=Saccharomyces
           cerevisiae GN=OYE2 PE=1 SV=3
          Length = 400

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 365 FWLEGESVQNFGGSTRFDPSQYPASSVQTATFALHPNFVLSE 490
           F  EGE   N GGS +F  S +    ++   FALHP  V  E
Sbjct: 297 FLTEGEGEYN-GGSNKFAYSIWKGPIIRAGNFALHPEVVREE 337


>sp|O73606|KCNG2_CHICK Potassium voltage-gated channel subfamily G
           member 2 OS=Gallus gallus GN=KCNG2 PE=2 SV=1
          Length = 518

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 245 LPILFHCLPCLYSNPCSYISKS*LGPDTGSPITSLPSISWWRRIAM 108
           L +LF C+     +P  Y+++S LG       TS+P+  WW  I+M
Sbjct: 372 LLLLFLCVAMALFSPLVYLAESELGAK--QEFTSIPTSYWWAVISM 415


>sp|Q7ZTU9|TBX2_DANRE T-box transcription factor TBX2b OS=Danio
           rerio GN=tbx2b PE=2 SV=3
          Length = 677

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 444 TEEAGYCEGSNLVEPPKF*TLSPSSQNCAHLQSIALPLVESQEF 313
           TE +G     +   P    T SPS     HLQS+AL  + SQ+F
Sbjct: 419 TENSGISGSKDSFSPLMVQTESPSHFGAGHLQSLALSGLHSQQF 462


>sp|P26630|PAX6_DANRE Paired box protein Pax[Zf-a] OS=Danio rerio
           GN=pax6a PE=2 SV=1
          Length = 437

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
 Frame = -1

Query: 209 SNPCSYISKS*LG------PDTGSPITSLPSISWWRRIAMKPLSDKSYPCLHSGSKTI-G 51
           + P S+ S S LG       +T S +  +PS +    + M+P    SY C+   S ++ G
Sbjct: 322 TTPVSFTSGSMLGRSDTALTNTYSALPPMPSFTMANNLPMQPSQTSSYSCMLPTSPSVNG 381

Query: 50  CSLDSFT 30
            S D++T
Sbjct: 382 RSYDTYT 388
tr_hit_id Q5Z656
Definition tr|Q5Z656|Q5Z656_ORYSJ Putative ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 OS=Oryza sativa subsp. japonica
Align length 39
Score (bit) 46.6
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955322|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_M16, 5'
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5Z656|Q5Z656_ORYSJ Putative ATPase, aminophospholipid transp...    47   7e-04
tr|Q0DBG8|Q0DBG8_ORYSJ Os06g0565900 protein (Fragment) OS=Oryza ...    47   7e-04
tr|B8B3T2|B8B3T2_ORYSI Putative uncharacterized protein OS=Oryza...    47   7e-04
tr|A3BCV4|A3BCV4_ORYSJ Putative uncharacterized protein OS=Oryza...    47   7e-04
tr|A7P6M9|A7P6M9_VITVI Chromosome chr9 scaffold_7, whole genome ...    42   0.014
tr|Q9Y1Y9|Q9Y1Y9_9METZ Protein tyrosine kinase OS=Ephydatia fluv...    36   1.00 
tr|A4JUM3|A4JUM3_BURVG ParB family protein OS=Burkholderia vietn...    34   3.8  
tr|A7QCR8|A7QCR8_VITVI Chromosome undetermined scaffold_79, whol...    33   6.5  
tr|A5B8B8|A5B8B8_VITVI Putative uncharacterized protein OS=Vitis...    33   6.5  
tr|Q4QAZ2|Q4QAZ2_LEIMA Putative uncharacterized protein OS=Leish...    33   6.5  
tr|A4I0L7|A4I0L7_LEIIN Putative uncharacterized protein OS=Leish...    33   6.5  
tr|Q58YF2|Q58YF2_9RETR Integrase (Fragment) OS=Simian foamy viru...    33   8.5  
tr|B3FXB8|B3FXB8_9RETR Integrase (Fragment) OS=Simian foamy viru...    33   8.5  
tr|Q2GDN6|Q2GDN6_NEOSM Putative uncharacterized protein OS=Neori...    33   8.5  

>tr|Q5Z656|Q5Z656_ORYSJ Putative ATPase, aminophospholipid transporter
            (APLT), class I, type 8A, member 1 OS=Oryza sativa subsp.
            japonica GN=P0567G03.5 PE=4 SV=1
          Length = 1222

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +3

Query: 3    DLELWSQERSKAVERAAYGFTARVEARIRLIRQRLHSNA 119
            D  +W +ERSKA +R   GFTARV+A+I+ IR +LH  A
Sbjct: 1175 DQTMWKRERSKARQRTKIGFTARVDAKIKQIRGKLHKKA 1213


>tr|Q0DBG8|Q0DBG8_ORYSJ Os06g0565900 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os06g0565900 PE=4 SV=1
          Length = 652

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +3

Query: 3   DLELWSQERSKAVERAAYGFTARVEARIRLIRQRLHSNA 119
           D  +W +ERSKA +R   GFTARV+A+I+ IR +LH  A
Sbjct: 605 DQTMWKRERSKARQRTKIGFTARVDAKIKQIRGKLHKKA 643


>tr|B8B3T2|B8B3T2_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_23406 PE=4 SV=1
          Length = 1222

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +3

Query: 3    DLELWSQERSKAVERAAYGFTARVEARIRLIRQRLHSNA 119
            D  +W +ERSKA +R   GFTARV+A+I+ IR +LH  A
Sbjct: 1175 DQTMWKRERSKARQRTKIGFTARVDAKIKQIRGKLHKKA 1213


>tr|A3BCV4|A3BCV4_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_020876 PE=4 SV=1
          Length = 1165

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +3

Query: 3    DLELWSQERSKAVERAAYGFTARVEARIRLIRQRLHSNA 119
            D  +W +ERSKA +R   GFTARV+A+I+ IR +LH  A
Sbjct: 1118 DQTMWKRERSKARQRTKIGFTARVDAKIKQIRGKLHKKA 1156


>tr|A7P6M9|A7P6M9_VITVI Chromosome chr9 scaffold_7, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00034132001
            PE=4 SV=1
          Length = 1085

 Score = 42.4 bits (98), Expect = 0.014
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +3

Query: 3    DLELWSQERSKAVERAAYGFTARVEARIRLIRQRLHSNASP 125
            D  +W++ERSKA +    GF+ARV+A+IR +R +L    SP
Sbjct: 1035 DQYMWTRERSKARQETKIGFSARVDAKIRQLRGKLQKKHSP 1075


>tr|Q9Y1Y9|Q9Y1Y9_9METZ Protein tyrosine kinase OS=Ephydatia
           fluviatilis GN=EfPTK13 PE=2 SV=2
          Length = 2069

 Score = 36.2 bits (82), Expect = 1.00
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -3

Query: 417 SNLVEPPKF*TLSPSSQN---CAHLQSIALPLVESQEFHKMGCSTFTFDNIHLCHFLRPA 247
           SNL  PP+   ++P SQ     + L   + P V S ++   GC+T +F NI L     P 
Sbjct: 576 SNLSPPPQALAVNPVSQTLYWASVLPDGSPPSVGSTQYSLAGCNT-SFVNITLTDIRPPV 634

Query: 246 ATNTFSLSPLPI 211
            T+TFS   +PI
Sbjct: 635 YTSTFSCLQIPI 646


>tr|A4JUM3|A4JUM3_BURVG ParB family protein OS=Burkholderia
           vietnamiensis (strain G4 / LMG 22486) GN=Bcep1808_7093
           PE=4 SV=1
          Length = 559

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 161 LYPDRVKTCLCTNKDCYIGKGDSEKVLVAAGLR 259
           ++ + + T  CTN+ CY GK D +  + AAGLR
Sbjct: 228 MFGESIATGNCTNRQCYNGKTDKQLEVTAAGLR 260


>tr|A7QCR8|A7QCR8_VITVI Chromosome undetermined scaffold_79, whole
            genome shotgun sequence OS=Vitis vinifera
            GN=GSVIVT00035521001 PE=4 SV=1
          Length = 1147

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 3    DLELWSQERSKAVERAAYGFTARVEARIRLIRQRLH 110
            D  +W +E++ +      GF+ARVEA+I  ++Q+LH
Sbjct: 1108 DNAMWLREQNNSKTTTHVGFSARVEAKISRLKQQLH 1143


>tr|A5B8B8|A5B8B8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_010090 PE=4 SV=1
          Length = 1399

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 3    DLELWSQERSKAVERAAYGFTARVEARIRLIRQRLH 110
            D  +W +E++ +      GF+ARVEA+I  ++Q+LH
Sbjct: 1360 DNAMWLREQNNSKTXTHVGFSARVEAKISRLKQQLH 1395


>tr|Q4QAZ2|Q4QAZ2_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF23.1460 PE=4 SV=1
          Length = 523

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
 Frame = -1

Query: 152 ITSLPSISWW-RRIAMKPLSDKSYPCLHSGSKTIGCS------LDSFTSLLRPQLKI 3
           I++LP I++  + +++ P SD+ +P LH   + + CS       + F +L+ PQL+I
Sbjct: 288 ISALPEIAFQGKTLSVSPESDREHPWLHFSVEALMCSAAEYYQTEEFKTLVNPQLRI 344