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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955323
Clone id TST39A01NGRL0022_M17
Library
Length 568
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_M17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGGAAGAGCAGCAGTAGTAGCAGAGGCAGCAAAGATACTCTCCAGCGCCCAGGCAGCCCT
TGCCCAAACGCAGGCTTGTAGAGCATCGCGTAGCGGCCTCGCTAAAAGATTCTGTCCTTC
TCACGAAGAAACAGGGGTTTTAACTCATGCAAACGGTTCCTGTGGTCGAGATATTCAACG
CATTTGCACCCCTTTCCCTACCCTGAATGCAATGAATCAGAAGGAACATGCACATTTCAA
CCCTACCTATCCGGATCACTCAGATAGTTTCTCTCCTAACTTTGAGCAAAGAAGGTATTT
GCATGAAGTAAATAGCTTTGAACAGAGTGCCGTTTGGAACGCCAGCTCTACAAGTTGCTG
CCAGCCTTCAAAGCACCATGGCAGGCACGGTGAGCCCTTGTATAGGTCCCTCCTAAAATC
TCATCATTGTTCTCCACATTCCTTCGTGGAGCACATTGAAGGAGCCCGCCACCACAATCC
TTACCTTTTTGAAACCGAAAGCACTGCAGCAGGCAACTGCTTGTCTTCACAATATGCTAA
TCACAGCCCTTGCAGATGTGGGATCCCC
■■Homology search results ■■ -
sp_hit_id Q98877
Definition sp|Q98877|DLX6A_DANRE Homeobox protein Dlx6a OS=Danio rerio
Align length 105
Score (bit) 33.9
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955323|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_M17, 5'
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q98877|DLX6A_DANRE Homeobox protein Dlx6a OS=Danio rerio GN=d...    34   0.58 
sp|P79777|BRAC_CHICK Brachyury protein OS=Gallus gallus GN=T PE=...    33   0.99 
sp|Q9AVK4|SCR_PEA Protein SCARECROW OS=Pisum sativum GN=SCR PE=2...    33   1.3  
sp|P22175|VNCA_MSTV Major non-capsid protein OS=Maize stripe vir...    32   2.9  
sp|Q9YHC5|FOXG1_XENLA Forkhead box protein G1 OS=Xenopus laevis ...    30   8.4  

>sp|Q98877|DLX6A_DANRE Homeobox protein Dlx6a OS=Danio rerio
           GN=dlx6a PE=2 SV=1
          Length = 247

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
 Frame = +2

Query: 203 LNAMNQKEHAHFNPTYPDHSDSFSPNFEQRRY-LHEVNSFEQSAVWNASSTSCCQPSKHH 379
           L A +  + A        HS   SP+     Y LH ++S                 S HH
Sbjct: 11  LEAQDSSKSAFMEFGQQSHSQQSSPSMAASHYPLHCLHS----------------GSHHH 54

Query: 380 GRHGEPLYRSLLKSHHCSPHSFVEHIEGARHHNPYLFETESTAAG 514
            +H    Y      +   P+S+V H     HH+PYL    S A+G
Sbjct: 55  HQHDSSPYSGSNSYNRSLPYSYVSH----PHHSPYLPSYHSNASG 95


>sp|P79777|BRAC_CHICK Brachyury protein OS=Gallus gallus GN=T PE=2
           SV=1
          Length = 433

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = +2

Query: 359 CQPSKHHGRHGEPLYRSLLKSHHCSPHSFVEHIEGARHHNPYLFETESTAA-----GNCL 523
           C P+  H + G PL  SL  +H C  +S + +   A + NPY     S  A       CL
Sbjct: 254 CPPANPHSQFGAPL--SLSPAHSCERYSPLRNHRSAPYPNPYTHRNNSPTAYTDNSSACL 311

Query: 524 SSQYANHSPCRCGIP 568
               ++ +    G+P
Sbjct: 312 PMLQSHDNWSSLGVP 326


>sp|Q9AVK4|SCR_PEA Protein SCARECROW OS=Pisum sativum GN=SCR PE=2
           SV=1
          Length = 819

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 228 MHISTLPIRITQIVSLLTLSKEGICMK*IALNRVPFGTPALQVAASL-QSTMAGTVSPCI 404
           +H+ TL ++  + VS   L +    +  I+    PFGT A +VAA   ++  A  VS C+
Sbjct: 445 LHLLTLLLQCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCL 504

Query: 405 GPS*NLIIVLHIP 443
           G    L +  H P
Sbjct: 505 GIYATLPVSSHTP 517


>sp|P22175|VNCA_MSTV Major non-capsid protein OS=Maize stripe virus
           PE=1 SV=1
          Length = 176

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
 Frame = +2

Query: 356 CCQPSKHHGRHGEPLYRSLLKSHHCSPHSFVEHIEGARHHNPYL------FETESTAAGN 517
           C + + HH    +PL+ S+ K      HSF+EH+ G       L      F+    + G+
Sbjct: 55  CVETAYHHPLETDPLFASVHKHLPDFCHSFLEHLLGGEQDENSLIDIGEFFKLLQPSLGD 114

Query: 518 CLSSQYANHSPCRCGI 565
            ++  Y  H     GI
Sbjct: 115 WITKYYLKHPNKMSGI 130


>sp|Q9YHC5|FOXG1_XENLA Forkhead box protein G1 OS=Xenopus laevis
           GN=foxg1 PE=2 SV=1
          Length = 436

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 308 VNSFEQSAVWNASSTSCCQPSKHHGRHGEPLYRSLLKSHHCSPH 439
           +NS    AV N +     QP  HH    +P +  L + HH  PH
Sbjct: 20  INSLMPEAVQNDNHP---QPHHHHHHQQQPQHLQLPQQHHLQPH 60
tr_hit_id B6HBQ1
Definition tr|B6HBQ1|B6HBQ1_PENCH Pc18g04570 protein OS=Penicillium chrysogenum Wisconsin 54-1255
Align length 138
Score (bit) 37.7
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955323|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_M17, 5'
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6HBQ1|B6HBQ1_PENCH Pc18g04570 protein OS=Penicillium chrysog...    38   0.45 
tr|B3MR15|B3MR15_DROAN GF21083 OS=Drosophila ananassae GN=GF2108...    37   0.77 
tr|Q6K884|Q6K884_ORYSJ Os02g0290300 protein OS=Oryza sativa subs...    36   1.3  
tr|B8AFY9|B8AFY9_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.3  
tr|A3A5Q1|A3A5Q1_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.3  
tr|Q587L5|Q587L5_ONCKE Peroxisome proliferator-activated recepto...    35   2.9  
tr|A9VBJ2|A9VBJ2_MONBE Predicted protein OS=Monosiga brevicollis...    35   2.9  
tr|B7ZRC9|B7ZRC9_XENLA Brachyury-like T-box transcription factor...    35   3.8  
tr|B8GSZ9|B8GSZ9_9GAMM Oxidoreductase protein OS=Thioalkalivibri...    35   3.8  
tr|A8PMC8|A8PMC8_9COXI Pseudouridylate synthase OS=Rickettsiella...    35   3.8  
tr|A8Q6L1|A8Q6L1_MALGO Putative uncharacterized protein OS=Malas...    35   3.8  
tr|B2IIC9|B2IIC9_BEII9 NADH dehydrogenase (Quinone) OS=Beijerinc...    34   4.9  
tr|Q29RC9|Q29RC9_DANRE Distal-less homeobox gene 6a OS=Danio rer...    34   5.0  
tr|A3SBV6|A3SBV6_9RHOB Alkane-1 monooxygenase, putative OS=Sulfi...    34   5.0  
tr|Q16RB3|Q16RB3_AEDAE Single-minded OS=Aedes aegypti GN=AAEL011...    34   6.5  
tr|Q83CB4|Q83CB4_COXBU Ankyrin repeat protein OS=Coxiella burnet...    33   8.5  
tr|B6IZR3|B6IZR3_COXB2 Ankyrin repeat protein OS=Coxiella burnet...    33   8.5  
tr|A9KFR3|A9KFR3_COXBN Ankyrin repeat protein OS=Coxiella burnet...    33   8.5  
tr|B4M2J3|B4M2J3_DROVI GJ18644 OS=Drosophila virilis GN=GJ18644 ...    33   8.5  
tr|A3LY36|A3LY36_PICST Predicted protein OS=Pichia stipitis GN=P...    33   8.5  

>tr|B6HBQ1|B6HBQ1_PENCH Pc18g04570 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc18g04570 PE=3 SV=1
          Length = 873

 Score = 37.7 bits (86), Expect = 0.45
 Identities = 37/138 (26%), Positives = 48/138 (34%), Gaps = 6/138 (4%)
 Frame = +2

Query: 122 HEETGVLTHANGSCGRDIQRICTPFPTLNAMNQKEHAHFNPTYPDHSDSFSPNFEQRRYL 301
           HE+    +HA G          +PF       +  H       P H   F P+ E     
Sbjct: 256 HEDIYPQSHAGGF---------SPFRRSENFGRPAHGAPGHIEPHHESHFEPHPESHYAP 306

Query: 302 HEVNSFEQSAVWNASSTSCCQPSKHHGRHGEPLYRSLLK---SHHCSPHSFVEHIEG--A 466
           H  N +E              P  H+  H EP Y +  +    HH  PH +  H     A
Sbjct: 307 HSENHYEP------------HPEPHYEPHPEPHYVNHQEPHVEHHPEPH-YAPHYSPTYA 353

Query: 467 RHHNPY-LFETESTAAGN 517
            HH P+  FE E TA  N
Sbjct: 354 PHHEPHTTFEHELTAVKN 371


>tr|B3MR15|B3MR15_DROAN GF21083 OS=Drosophila ananassae GN=GF21083
           PE=4 SV=1
          Length = 713

 Score = 37.0 bits (84), Expect = 0.77
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +2

Query: 365 PSKHHGRHGEPLYRSL----LKSHHCSPHSFVEHIEGARHHNPYLF 490
           P  HHGRHG   +  +       HH  PH F  H  G RH  P+ F
Sbjct: 231 PHGHHGRHGRHGHHHVRPHHFGPHHFGPHHFGPHHFGPRHFGPHPF 276


>tr|Q6K884|Q6K884_ORYSJ Os02g0290300 protein OS=Oryza sativa subsp.
           japonica GN=OJ1086_G08.1 PE=4 SV=1
          Length = 786

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 362 QPSKHHGRHGEPLYRSLLKSHHCSPHSFVEHIEGARHHNPYLFETES 502
           QPS+H GRHG P+  S   S     H  + + EG  HH+    ++ S
Sbjct: 418 QPSEHDGRHGMPM-NSFTTSSGLDVHMILRNSEGGNHHHDLFSDSRS 463


>tr|B8AFY9|B8AFY9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06807 PE=4 SV=1
          Length = 875

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 362 QPSKHHGRHGEPLYRSLLKSHHCSPHSFVEHIEGARHHNPYLFETES 502
           QPS+H GRHG P+  S   S     H  + + EG  HH+    ++ S
Sbjct: 426 QPSEHDGRHGMPM-NSFTTSSGLDVHMILRNSEGGNHHHDLFSDSRS 471


>tr|A3A5Q1|A3A5Q1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006123 PE=4 SV=1
          Length = 815

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 362 QPSKHHGRHGEPLYRSLLKSHHCSPHSFVEHIEGARHHNPYLFETES 502
           QPS+H GRHG P+  S   S     H  + + EG  HH+    ++ S
Sbjct: 434 QPSEHDGRHGMPM-NSFTTSSGLDVHMILRNSEGGNHHHDLFSDSRS 479


>tr|Q587L5|Q587L5_ONCKE Peroxisome proliferator-activated receptor
           gamma OS=Oncorhynchus keta GN=PPARG PE=2 SV=1
          Length = 662

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
 Frame = +2

Query: 227 HAHFNPTYPDHSDSFSPNFEQRRYLHEVNSFEQSAVWNASSTSCCQPSKHHGRHGEPLYR 406
           H+H +P +  H+ SF  +     + H  NS    +  + S       S HH  H  P + 
Sbjct: 56  HSHNSPHHHSHN-SFHHHSHNSPHHHSHNSPHHHS--HNSPHHHSHNSPHHHSHNSPHHH 112

Query: 407 SLLKSHHCSPHSFVEHIEGARHH----NPYLFETESTAAGNCLSSQYANHSPCR 556
           S    HH S +S   H   + HH    +P+     S    +   S   NHSP R
Sbjct: 113 SHNSLHHHSHNSPHHHSHNSPHHHSHNSPHHHSHNSPRHHSHNRSHSFNHSPYR 166



 Score = 33.5 bits (75), Expect = 8.5
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = +2

Query: 224 EHAHFNPTYPDHSDSFSPNFEQRRYLHEVNSFEQSAVWNASSTSCCQPSKHHGRHGEPLY 403
           E++H +P +  H+   SP+       H  +        + S       S HH  H  P +
Sbjct: 47  EYSHNSPHHHSHN---SPHHHSHNSFHHHSHNSPHHHSHNSPHHHSHNSPHHHSHNSPHH 103

Query: 404 RSLLKSHHCSPHSFVEHIEGARHHNPY 484
            S    HH S +S   H   + HH+ +
Sbjct: 104 HSHNSPHHHSHNSLHHHSHNSPHHHSH 130


>tr|A9VBJ2|A9VBJ2_MONBE Predicted protein OS=Monosiga brevicollis
           GN=29589 PE=4 SV=1
          Length = 894

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 365 PSKHHGRHGEPLYRSLLKSHHCSPHSFVEHIEGARHHNPYLFETESTAAGNCLSSQYANH 544
           P + H R  E  + S+ + HH  P     H +G RHH PY+ ++ +    + L S    H
Sbjct: 227 PPQPHRRRSE--HTSVQQHHHYQPQPHQSHAQGHRHHMPYVPQSHNVIQQSQLYSASHQH 284


>tr|B7ZRC9|B7ZRC9_XENLA Brachyury-like T-box transcription factor
           OS=Xenopus laevis GN=bra3-a PE=2 SV=1
          Length = 434

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +2

Query: 311 NSFEQSAVWNASST-SCCQPSKHHGRHGEPLYRSLLKSHHCSPHSFVEHIEGARHHNPYL 487
           + + Q   W    T S C P+ HH + G PL  S+  SH C  ++ + +   + + +PY 
Sbjct: 239 SGYSQLGNWLIPGTGSLCSPTNHHSQFGGPL--SIPSSHGCERYTTLRNHRSSPYPSPY- 295

Query: 488 FETESTAAGNCLSSQYANHSPC 553
                T   N   S   N S C
Sbjct: 296 -----THRNNSPPSYTENSSAC 312


>tr|B8GSZ9|B8GSZ9_9GAMM Oxidoreductase protein OS=Thioalkalivibrio
           sp. HL-EbGR7 GN=Tgr7_1933 PE=4 SV=1
          Length = 290

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 117 GQNLLARPLRDALQACVWARAAWALESIFAASATTAALP 1
           G+ + A  L+   + CVWAR   +LE + AA AT AA P
Sbjct: 12  GRPMAANLLKAGYEVCVWARRPESLEPLKAAGATVAASP 50


>tr|A8PMC8|A8PMC8_9COXI Pseudouridylate synthase OS=Rickettsiella
           grylli GN=truA PE=3 SV=1
          Length = 264

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
 Frame = +2

Query: 263 DSFSPNFEQ--RRYLHEV-NSFEQSAVWNASSTSCCQPSKHHGRH-------GEPLYRSL 412
           D+F   F    RRY + + N   +SA+WNA ++ CC P      H       GE  + S 
Sbjct: 96  DTFHARFSALARRYRYIIYNRHLKSALWNAYTSHCCYPLNEKDMHRAAQYLVGEHDFSSF 155

Query: 413 LKSHHCSPHSF--VEHIEGARHHNPYLFETESTA 508
             +   + H+   ++HI+  RH +  + + ++ A
Sbjct: 156 RAASCQANHALREIQHIQVKRHGDYVIMDIQANA 189