DK955325 |
Clone id |
TST39A01NGRL0022_M20 |
Library |
TST39 |
Length |
488 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_M20. 5' end sequence. |
Accession |
DK955325 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL130Contig1 |
Sequence |
CACGATGGTGGAGAAGGGCAAGAGTCGCAAGGACGAGGTCGCCACTCGCGAGTTCACTGT GAATCTGCACAAGCGATTGCATAGCTGCACCTTCAAGAAGAAGGCCCCTAAAGCTATTAA GGAGATCAAGAAGTTTGCCCAACAAATGATGGGGACCTCAGATGTGCGTGTAGATGTCAA GCTAAACAAGCACCTATGGAGCCGTGGGATCAGGAACGTGCCCAAGAGAGTAAGGATCAG GATTGCAAGGAAGCGTAATGTGGAGGAAGATGCAAAGGAAGATCTGTACTCTTATGTAAC AGTAGCTGAGGTACCACCTACTGGATACCGAGGCCTTGGAACCAAGGTTATTGAAGAGGA TTAGGGTGTAGTTTGACTGCTGGGTGGTTTCCTTGCTCAGCTCAAACACCTATTAATTTT GAGCAATCTTTATATGAAACCAAATTTTGAAGTTTAGGTTTATGTCACAAAAAAAAAAAA AAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O65071 |
Definition |
sp|O65071|RL31_PICMA 60S ribosomal protein L31 OS=Picea mariana |
Align length |
119 |
Score (bit) |
167.0 |
E-value |
2.0e-41 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RVD4 |
Definition |
tr|A9RVD4|A9RVD4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
119 |
Score (bit) |
179.0 |
E-value |
6.0e-44 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955325|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_M20, 5' (468 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RVD4|A9RVD4_PHYPA Predicted protein OS=Physcomitrella paten... 179 6e-44 tr|A9SHM4|A9SHM4_PHYPA Predicted protein OS=Physcomitrella paten... 173 3e-42 tr|A9S9C6|A9S9C6_PHYPA Predicted protein OS=Physcomitrella paten... 173 4e-42 tr|A9NPB8|A9NPB8_PICSI Putative uncharacterized protein OS=Picea... 171 2e-41 tr|A9RU26|A9RU26_PHYPA Predicted protein OS=Physcomitrella paten... 168 1e-40 tr|A9S5R5|A9S5R5_PHYPA Predicted protein OS=Physcomitrella paten... 168 1e-40 tr|Q6Z3T3|Q6Z3T3_ORYSJ Putative 60S ribosomal protein L31 (Putat... 167 2e-40 tr|A9PGT6|A9PGT6_POPTR Putative uncharacterized protein OS=Popul... 167 2e-40 tr|A2YWT6|A2YWT6_ORYSI Putative uncharacterized protein OS=Oryza... 167 2e-40 tr|B6SNJ5|B6SNJ5_MAIZE 60S ribosomal protein L31 OS=Zea mays PE=... 167 2e-40 tr|A7PEC6|A7PEC6_VITVI Chromosome chr11 scaffold_13, whole genom... 167 2e-40 tr|B6VC52|B6VC52_VERFO 60S ribosomal protein L31 OS=Vernicia for... 164 3e-39 tr|A2YCB1|A2YCB1_ORYSI Putative uncharacterized protein OS=Oryza... 164 3e-39 tr|A1KXE2|A1KXE2_LACSA Putative ribosomal protein L31 OS=Lactuca... 164 3e-39 tr|A7QWV5|A7QWV5_VITVI Chromosome chr13 scaffold_210, whole geno... 163 5e-39 tr|A5C1M6|A5C1M6_VITVI Putative uncharacterized protein OS=Vitis... 162 8e-39 tr|Q5XLD9|Q5XLD9_MAIZE Putative 60S ribosomal protein L31 OS=Zea... 162 1e-38 tr|B6SJJ1|B6SJJ1_MAIZE 60S ribosomal protein L31 OS=Zea mays PE=... 162 1e-38 tr|Q5Z9Z8|Q5Z9Z8_ORYSJ Os06g0319700 protein OS=Oryza sativa subs... 160 2e-38 tr|B6UEN2|B6UEN2_MAIZE 60S ribosomal protein L31 OS=Zea mays PE=... 159 5e-38 tr|B6U961|B6U961_MAIZE 60S ribosomal protein L31 OS=Zea mays PE=... 159 5e-38 tr|B6SJB0|B6SJB0_MAIZE 60S ribosomal protein L31 OS=Zea mays PE=... 159 5e-38 tr|Q5MEN2|Q5MEN2_PSEMZ 60S ribosomal protein L31a (Fragment) OS=... 158 1e-37 tr|A9PDT3|A9PDT3_POPTR Putative uncharacterized protein OS=Popul... 156 6e-37 tr|Q6ZGV5|Q6ZGV5_ORYSJ Os02g0717800 protein OS=Oryza sativa subs... 154 2e-36 tr|B7FGL4|B7FGL4_MEDTR Putative uncharacterized protein OS=Medic... 154 3e-36 tr|Q20BM6|Q20BM6_PANGI Ribosomal protein L31 OS=Panax ginseng PE... 151 2e-35 tr|Q0WRN2|Q0WRN2_ARATH Putative ribosomal protein OS=Arabidopsis... 150 4e-35 tr|B7FH04|B7FH04_MEDTR Putative uncharacterized protein OS=Medic... 147 3e-34 tr|A3AAR3|A3AAR3_ORYSJ Putative uncharacterized protein OS=Oryza... 144 3e-33
>tr|A9RVD4|A9RVD4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_178472 PE=4 SV=1 Length = 120
Score = 179 bits (454), Expect = 6e-44 Identities = 84/119 (70%), Positives = 98/119 (82%) Frame = +2
Query: 5 MVEKGKSRKDEVATREFTVNLHKRLHSCTFXXXXXXXXXXXXXFAQQMMGTSDVRVDVKL 184 MVEKGKSRKDEV TRE+T+NLHKRLH CTF FAQ+ MGTSDVR+DVKL Sbjct: 1 MVEKGKSRKDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTSDVRLDVKL 60
Query: 185 NKHLWSRGIRNVPKRVRIRIARKRNVEEDAKEDLYSYVTVAEVPPTGYRGLGTKVIEED 361 NKH+WSRG+RNVP RVR+RIARKRN +EDAKE+LYSYV+VAE+PP G R LGTK++EE+ Sbjct: 61 NKHIWSRGVRNVPTRVRVRIARKRNDDEDAKEELYSYVSVAEIPPEGLRNLGTKIVEEE 119
>tr|A9SHM4|A9SHM4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_185064 PE=4 SV=1 Length = 120
Score = 173 bits (439), Expect = 3e-42 Identities = 83/119 (69%), Positives = 96/119 (80%) Frame = +2
Query: 5 MVEKGKSRKDEVATREFTVNLHKRLHSCTFXXXXXXXXXXXXXFAQQMMGTSDVRVDVKL 184 MVEK K RKDEV TRE+T+NLHKRLH CTF FAQ+ MGTSDVR+DVKL Sbjct: 1 MVEKTKIRKDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKTMGTSDVRLDVKL 60
Query: 185 NKHLWSRGIRNVPKRVRIRIARKRNVEEDAKEDLYSYVTVAEVPPTGYRGLGTKVIEED 361 NKH+WSRG+RNVP RVR+RIARKRN +EDAKE+LYSYV+VAEVP G+R LGTKV+EE+ Sbjct: 61 NKHIWSRGVRNVPTRVRVRIARKRNDDEDAKEELYSYVSVAEVPAVGFRNLGTKVVEEE 119
>tr|A9S9C6|A9S9C6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_209921 PE=4 SV=1 Length = 120
Score = 173 bits (438), Expect = 4e-42 Identities = 83/119 (69%), Positives = 96/119 (80%) Frame = +2
Query: 5 MVEKGKSRKDEVATREFTVNLHKRLHSCTFXXXXXXXXXXXXXFAQQMMGTSDVRVDVKL 184 MVEK K RKDEV TRE+T+NLHKRLH CTF FAQ+ MGTSDVR+DVKL Sbjct: 1 MVEKTKIRKDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKTMGTSDVRLDVKL 60
Query: 185 NKHLWSRGIRNVPKRVRIRIARKRNVEEDAKEDLYSYVTVAEVPPTGYRGLGTKVIEED 361 NKH+WSRG+RNVP RVR+RIARKRN +EDAKE+LYSYV+VAEVP G+R LGTKV+EE+ Sbjct: 61 NKHIWSRGVRNVPTRVRVRIARKRNDDEDAKEELYSYVSVAEVPAEGFRNLGTKVVEEE 119
>tr|A9NPB8|A9NPB8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 120
Score = 171 bits (433), Expect = 2e-41 Identities = 82/119 (68%), Positives = 98/119 (82%) Frame = +2
Query: 5 MVEKGKSRKDEVATREFTVNLHKRLHSCTFXXXXXXXXXXXXXFAQQMMGTSDVRVDVKL 184 MVEKGKSR+DEV TRE+T+NLHKRLH CTF FAQ++MGT+DVR+DVKL Sbjct: 1 MVEKGKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKVMGTTDVRLDVKL 60
Query: 185 NKHLWSRGIRNVPKRVRIRIARKRNVEEDAKEDLYSYVTVAEVPPTGYRGLGTKVIEED 361 NK +WSRGIR+VP+R+R+RI+RKRN EEDAKE+LYS VTVAEVPP G GLGTK+IEE+ Sbjct: 61 NKAVWSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGLGTKIIEEE 119
>tr|A9RU26|A9RU26_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_205598 PE=4 SV=1 Length = 119
Score = 168 bits (426), Expect = 1e-40 Identities = 80/119 (67%), Positives = 94/119 (78%) Frame = +2
Query: 5 MVEKGKSRKDEVATREFTVNLHKRLHSCTFXXXXXXXXXXXXXFAQQMMGTSDVRVDVKL 184 MVEK K RKDEV RE+T+NLHKRLH CTF FAQ+ MGTSDVR+DVKL Sbjct: 1 MVEKSKPRKDEVVAREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKTMGTSDVRLDVKL 60
Query: 185 NKHLWSRGIRNVPKRVRIRIARKRNVEEDAKEDLYSYVTVAEVPPTGYRGLGTKVIEED 361 NKH+WSRG+RNVP RVR+ IARKRN +EDAKE+LYSYV+VAEVP G+R LGTKV++E+ Sbjct: 61 NKHIWSRGVRNVPTRVRVLIARKRNDDEDAKEELYSYVSVAEVPAEGFRNLGTKVVDEE 119
>tr|A9S5R5|A9S5R5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_162993 PE=4 SV=1 Length = 121
Score = 168 bits (425), Expect = 1e-40 Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 1/120 (0%) Frame = +2
Query: 5 MVEKG-KSRKDEVATREFTVNLHKRLHSCTFXXXXXXXXXXXXXFAQQMMGTSDVRVDVK 181 MVEK KSRK EV TRE+T+NLHKRLH CTF FAQ+ MGTSDVR+DVK Sbjct: 1 MVEKAAKSRKAEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTSDVRLDVK 60
Query: 182 LNKHLWSRGIRNVPKRVRIRIARKRNVEEDAKEDLYSYVTVAEVPPTGYRGLGTKVIEED 361 LNKH+WSRG+RNVP RVR+RIARKRN +EDAKE+LYSYV+VAE+PP G R LGTK++E++ Sbjct: 61 LNKHIWSRGVRNVPTRVRVRIARKRNDDEDAKEELYSYVSVAEIPPEGLRALGTKIVEDE 120
>tr|Q6Z3T3|Q6Z3T3_ORYSJ Putative 60S ribosomal protein L31 (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica GN=OSJNBa0025J22.10 PE=4 SV=1 Length = 122
Score = 167 bits (424), Expect = 2e-40 Identities = 83/120 (69%), Positives = 97/120 (80%), Gaps = 2/120 (1%) Frame = +2
Query: 5 MVEK--GKSRKDEVATREFTVNLHKRLHSCTFXXXXXXXXXXXXXFAQQMMGTSDVRVDV 178 MVEK G +RK+EV TRE+T+NLHKRLHSCTF FAQ+ MGT+DVRVDV Sbjct: 1 MVEKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDV 60
Query: 179 KLNKHLWSRGIRNVPKRVRIRIARKRNVEEDAKEDLYSYVTVAEVPPTGYRGLGTKVIEE 358 KLNKH+WS GIR+VP+RVR+RIARKRN EEDAKE+LYS VTVAEVPP G +GLGTKV++E Sbjct: 61 KLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVDE 120
>tr|A9PGT6|A9PGT6_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 120
Score = 167 bits (424), Expect = 2e-40 Identities = 80/119 (67%), Positives = 95/119 (79%) Frame = +2
Query: 5 MVEKGKSRKDEVATREFTVNLHKRLHSCTFXXXXXXXXXXXXXFAQQMMGTSDVRVDVKL 184 MVEK K RK+EV TRE+T+NLHKRLH CTF FA + MGT DVRVDVKL Sbjct: 1 MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFALKAMGTKDVRVDVKL 60
Query: 185 NKHLWSRGIRNVPKRVRIRIARKRNVEEDAKEDLYSYVTVAEVPPTGYRGLGTKVIEED 361 NKH+WSRGIR+VP+R+R+RI+R+RN +EDAKE+LYS VTVAE+PP G +GLGTKVIEED Sbjct: 61 NKHIWSRGIRSVPRRIRVRISRRRNDDEDAKEELYSLVTVAELPPEGTKGLGTKVIEED 119
>tr|A2YWT6|A2YWT6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_29801 PE=4 SV=1 Length = 122
Score = 167 bits (424), Expect = 2e-40 Identities = 83/120 (69%), Positives = 97/120 (80%), Gaps = 2/120 (1%) Frame = +2
Query: 5 MVEK--GKSRKDEVATREFTVNLHKRLHSCTFXXXXXXXXXXXXXFAQQMMGTSDVRVDV 178 MVEK G +RK+EV TRE+T+NLHKRLHSCTF FAQ+ MGT+DVRVDV Sbjct: 1 MVEKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDV 60
Query: 179 KLNKHLWSRGIRNVPKRVRIRIARKRNVEEDAKEDLYSYVTVAEVPPTGYRGLGTKVIEE 358 KLNKH+WS GIR+VP+RVR+RIARKRN EEDAKE+LYS VTVAEVPP G +GLGTKV++E Sbjct: 61 KLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVDE 120
>tr|B6SNJ5|B6SNJ5_MAIZE 60S ribosomal protein L31 OS=Zea mays PE=2 SV=1 Length = 124
Score = 167 bits (423), Expect = 2e-40 Identities = 78/115 (67%), Positives = 93/115 (80%) Frame = +2
Query: 17 GKSRKDEVATREFTVNLHKRLHSCTFXXXXXXXXXXXXXFAQQMMGTSDVRVDVKLNKHL 196 G SRKDEV TRE+T+NLHKRLH CTF FAQ+ MGT+D+R+DVKLNKH+ Sbjct: 9 GGSRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKHI 68
Query: 197 WSRGIRNVPKRVRIRIARKRNVEEDAKEDLYSYVTVAEVPPTGYRGLGTKVIEED 361 WS GIR+VP+RVR+RIARKRN EEDAKE+LYS VTVAE+PP G +GLGTKV+E+D Sbjct: 69 WSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEIPPEGLKGLGTKVVEDD 123
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