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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955332
Clone id TST39A01NGRL0022_N03
Library
Length 785
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_N03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGAGGGAGGCATGCATAGCCTTGAGAGAGGTAGGCTCGATGATGGCATAGCAGGTTGATG
AGGGATGCAGGCTCCTACGAGCAGGTCCTCCTGTGGCATTCTCTCTCTCTCTCTCTCTCT
CTCTCCTGTCCAATCAAAAGATTGGTGGCTGGATGCAACTTCAAGTGTAGGCAGTCCCAT
TGCTTCAATGTGCTCAACAATGCTGCGATAGGACCTAACAAGCCACCTGCAGGTCACTAT
GCTTATATTCTGTCCCCGATTTTTCAGCCATGCACCCTGCTGAAGGAATACTGTGTTTTG
CATACATACCGTCTTGGAAAGCAGCCTCACAAAGAAGTCAATGCTGAGATAAACAAATCA
GGTACTGGGTTTGCTGACAAGTTGGGGAGGCACACGTCCACTCTCTGCGTCGTCAACAGA
CAGGCGACCCCAACCCCCTCTCACCTCCAAAGCTCCGCCCAGCTGTTAAATGATTGATAT
CCCCTTCCTGTGCCCACTCTCCAAGTAAGCATTTTCTCGGCCTTTGCCTTCTTGGGTTCT
CTATCATGCAGCTAAAGATAACTATCAAGCATGGCAAAAGCAGTGAACTTTCAAAGTTCA
AGAGCGTGGCCGTATGATGTGCAAATGGGCAGGTCCCCATTTTAACCTTTCATATGGCTT
TTCTCAAAAAGCAACAAGGTTGGCCTTCGTTTTTTCCCAAAGGGGATTAAAAGTTTTTGA
CAATTAAAATGAAAAAGTGGTATTTTTTGTGGGTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id O30971
Definition sp|O30971|TNAA_RHOCA Tryptophanase OS=Rhodobacter capsulatus
Align length 31
Score (bit) 31.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955332|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_N03, 5'
         (755 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O30971|TNAA_RHOCA Tryptophanase OS=Rhodobacter capsulatus GN=...    32   4.9  
sp|Q92ZJ6|DNE22_RHIME Error-prone DNA polymerase 2 OS=Rhizobium ...    32   4.9  
sp|Q96Q91|B3A4_HUMAN Anion exchange protein 4 OS=Homo sapiens GN...    31   6.4  
sp|P63016|PAX6_RAT Paired box protein Pax-6 OS=Rattus norvegicus...    31   8.4  
sp|P63015|PAX6_MOUSE Paired box protein Pax-6 OS=Mus musculus GN...    31   8.4  
sp|P26367|PAX6_HUMAN Paired box protein Pax-6 OS=Homo sapiens GN...    31   8.4  
sp|Q1LZF1|PAX6_BOVIN Paired box protein Pax-6 OS=Bos taurus GN=P...    31   8.4  

>sp|O30971|TNAA_RHOCA Tryptophanase OS=Rhodobacter capsulatus
           GN=tnaA PE=3 SV=1
          Length = 454

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 228 RWLVRSYRSIVEHIEAMGLPTLEVASSHQSF 136
           R+ +R+++ IVE ++AMG+P ++ A  H  F
Sbjct: 315 RYRIRTHQYIVERLDAMGVPVVKPAGGHAVF 345


>sp|Q92ZJ6|DNE22_RHIME Error-prone DNA polymerase 2 OS=Rhizobium
           meliloti GN=dnaE2-2 PE=3 SV=1
          Length = 1087

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 500 RVGTGRGYQSFNSWAELWR*EGVGVACLLTTQRVDVCLPNLS 375
           R+   R  + F S  ++WR  GV VA L+     D  LP+LS
Sbjct: 812 RIVAARADEPFTSVDDMWRRSGVPVASLVELAEADAFLPSLS 853


>sp|Q96Q91|B3A4_HUMAN Anion exchange protein 4 OS=Homo sapiens
           GN=SLC4A9 PE=2 SV=2
          Length = 983

 Score = 31.2 bits (69), Expect = 6.4
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
 Frame = +2

Query: 356 NQVLGLLTSWGGTRPLSASSTDRRP-----QPPLTSKAPP 460
           NQ  G    WG T P  AS  +  P     Q PL  K PP
Sbjct: 183 NQTTGTRPCWGSTHPRKASDNEEAPLREQCQNPLRQKLPP 222


>sp|P63016|PAX6_RAT Paired box protein Pax-6 OS=Rattus norvegicus
           GN=Pax6 PE=2 SV=1
          Length = 422

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 418 RQATPTPSHLQSSAQLLND*Y-PLPVPTLQVSIFSA 522
           RQA+ TPSH+  S+      Y P+P PT  VS F++
Sbjct: 276 RQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTS 311


>sp|P63015|PAX6_MOUSE Paired box protein Pax-6 OS=Mus musculus
           GN=Pax6 PE=1 SV=1
          Length = 422

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 418 RQATPTPSHLQSSAQLLND*Y-PLPVPTLQVSIFSA 522
           RQA+ TPSH+  S+      Y P+P PT  VS F++
Sbjct: 276 RQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTS 311


>sp|P26367|PAX6_HUMAN Paired box protein Pax-6 OS=Homo sapiens
           GN=PAX6 PE=1 SV=2
          Length = 422

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 418 RQATPTPSHLQSSAQLLND*Y-PLPVPTLQVSIFSA 522
           RQA+ TPSH+  S+      Y P+P PT  VS F++
Sbjct: 276 RQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTS 311


>sp|Q1LZF1|PAX6_BOVIN Paired box protein Pax-6 OS=Bos taurus GN=PAX6
           PE=2 SV=1
          Length = 422

 Score = 30.8 bits (68), Expect = 8.4
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 418 RQATPTPSHLQSSAQLLND*Y-PLPVPTLQVSIFSA 522
           RQA+ TPSH+  S+      Y P+P PT  VS F++
Sbjct: 276 RQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTS 311
tr_hit_id A5C7D8
Definition tr|A5C7D8|A5C7D8_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 47
Score (bit) 38.1
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955332|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_N03, 5'
         (755 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5C7D8|A5C7D8_VITVI Putative uncharacterized protein OS=Vitis...    38   0.64 
tr|B2G3F3|B2G3F3_CHICK B-lec OS=Gallus gallus GN=Blec PE=4 SV=1        38   0.83 
tr|Q6ZYP6|Q6ZYP6_CHICK B-lec protein (C-type lectin-like recepto...    37   1.1  
tr|Q6ZYP3|Q6ZYP3_CHICK B-lec protein (C-type lectin-like recepto...    37   1.1  
tr|B5BSC5|B5BSC5_CHICK C-type lectin-like receptor OS=Gallus gal...    37   1.1  
tr|B5BSB1|B5BSB1_CHICK C-type lectin-like receptor OS=Gallus gal...    37   1.1  
tr|B2G3E7|B2G3E7_CHICK B-lec OS=Gallus gallus GN=Blec PE=4 SV=1        37   1.1  
tr|A5HUL1|A5HUL1_CHICK C-type lectin-like receptor (B-lec) OS=Ga...    37   1.1  
tr|B5BSS6|B5BSS6_CHICK C-type lectin-like receptor OS=Gallus gal...    35   7.1  
tr|Q3B4U4|Q3B4U4_PELLD Protein-tyrosine kinase OS=Pelodictyon lu...    35   7.1  
tr|Q8DG02|Q8DG02_VIBVU Predicted membrane protein OS=Vibrio vuln...    34   9.2  
tr|Q7MMJ3|Q7MMJ3_VIBVY Predicted membrane protein OS=Vibrio vuln...    34   9.2  
tr|A7QFS0|A7QFS0_VITVI Chromosome undetermined scaffold_89, whol...    34   9.2  

>tr|A5C7D8|A5C7D8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002732 PE=4 SV=1
          Length = 253

 Score = 38.1 bits (87), Expect = 0.64
 Identities = 21/47 (44%), Positives = 24/47 (51%)
 Frame = +1

Query: 298 LHTYRLGKQPHKEVNAEINKSGTGFADKLGRHTSTLCVVNRQATPTP 438
           L  +RLGKQPHK+ N +  K G   A  LG          R ATPTP
Sbjct: 72  LQKFRLGKQPHKDFNDQAVKDGEKAASALGN--------QRNATPTP 110


>tr|B2G3F3|B2G3F3_CHICK B-lec OS=Gallus gallus GN=Blec PE=4 SV=1
          Length = 188

 Score = 37.7 bits (86), Expect = 0.83
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -2

Query: 499 EWAQEGDINHLTAGRSFG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   +  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNHSSLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|Q6ZYP6|Q6ZYP6_CHICK B-lec protein (C-type lectin-like receptor)
           OS=Gallus gallus GN=B-lec PE=2 SV=1
          Length = 188

 Score = 37.4 bits (85), Expect = 1.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -2

Query: 499 EWAQEGDINHLTAGRSFG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   +  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|Q6ZYP3|Q6ZYP3_CHICK B-lec protein (C-type lectin-like receptor)
           OS=Gallus gallus GN=B-lec PE=2 SV=1
          Length = 188

 Score = 37.4 bits (85), Expect = 1.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -2

Query: 499 EWAQEGDINHLTAGRSFG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   +  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSTRRNWVCTKPALQKPRKNFCIS 187


>tr|B5BSC5|B5BSC5_CHICK C-type lectin-like receptor OS=Gallus gallus
           GN=Blec1 PE=4 SV=1
          Length = 188

 Score = 37.4 bits (85), Expect = 1.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -2

Query: 499 EWAQEGDINHLTAGRSFG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   +  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|B5BSB1|B5BSB1_CHICK C-type lectin-like receptor OS=Gallus gallus
           GN=Blec1 PE=4 SV=1
          Length = 188

 Score = 37.4 bits (85), Expect = 1.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -2

Query: 499 EWAQEGDINHLTAGRSFG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   +  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|B2G3E7|B2G3E7_CHICK B-lec OS=Gallus gallus GN=Blec PE=4 SV=1
          Length = 188

 Score = 37.4 bits (85), Expect = 1.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -2

Query: 499 EWAQEGDINHLTAGRSFG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   +  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|A5HUL1|A5HUL1_CHICK C-type lectin-like receptor (B-lec)
           OS=Gallus gallus GN=Blec1 PE=4 SV=1
          Length = 188

 Score = 37.4 bits (85), Expect = 1.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -2

Query: 499 EWAQEGDINHLTAGRSFG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   +  G     G+ GL S  C  RR W C  P  Q+ +   C+S
Sbjct: 132 EWVNRSPLSHLFQVQGDGLCAYLGDAGLSSSHCSARRNWVCTKPALQKPRKNFCIS 187


>tr|B5BSS6|B5BSS6_CHICK C-type lectin-like receptor OS=Gallus gallus
           GN=Blec1 PE=4 SV=1
          Length = 188

 Score = 34.7 bits (78), Expect = 7.1
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = -2

Query: 499 EWAQEGDINHLTAGRSFG-----GERGLGSPVC*RRREWTCASPTCQQTQYLICLS 347
           EW     ++HL   +  G     G+ GL S  C  RR W C     Q+ +   C+S
Sbjct: 132 EWVNRSSLSHLFQVQGDGLCAYLGDAGLSSSHCSTRRNWVCTKSALQKPRKNFCIS 187


>tr|Q3B4U4|Q3B4U4_PELLD Protein-tyrosine kinase OS=Pelodictyon
           luteolum (strain DSM 273) GN=Plut_0764 PE=4 SV=1
          Length = 763

 Score = 34.7 bits (78), Expect = 7.1
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +1

Query: 277 LLKEYCVLHTYRLGKQPHKEVNAEINKSGTGFADKLGRHTSTLCVVNRQA 426
           LL++ C+L T R+  +P K+ N       + FAD+    T+T+C V RQA
Sbjct: 125 LLRQRCLLLTKRIRVEPVKDTNMLNISVASPFADEAELLTNTICEVYRQA 174