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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955336
Clone id TST39A01NGRL0022_N07
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_N07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TAAAGTTTGTGGAACTGCGCGGAGGCGGGGCCATACGACAGTTGTAAGCATGGAGGATTT
GAGGTCGGTGGGATGTACCCTTAAAGAGATTTCGTCGTGGCGTCAACGTCTGATCAACGG
TGGGGACTTGAGAGAGAGAGAGGGCGCCTTATCTGTGCGTGTTGATAAGCCTCTTGTGAG
AGAGACCGAGCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGAGCCGGTGCTATGAAA
GCGCAAGCTGGGGTAAGTAATGTTATAGGCGAGGTGGGATGGTGGTGGGCAGTGGTAGTG
TTGGTGCCCTTTGCCTTGTACAGCAGGCCCTTCATCGTGGGAGACTTTGAGACGTACAGA
CATCTCACCATCGCTGCCCTCGCCGGTCGTTATGACGTCGCTGGCCTCCACATTTCCAAC
CACATCTCCACTTGGCAGGTGCATGCATTAGCGGGGCTG
■■Homology search results ■■ -
sp_hit_id Q8N441
Definition sp|Q8N441|FGRL1_HUMAN Fibroblast growth factor receptor-like 1 OS=Homo sapiens
Align length 57
Score (bit) 32.7
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955336|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_N07, 5'
         (459 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N441|FGRL1_HUMAN Fibroblast growth factor receptor-like 1 O...    33   0.77 
sp|Q52KL1|FIT2_DANRE Fat-inducing protein 2 OS=Danio rerio GN=fi...    32   1.3  
sp|Q292U5|ESN_DROPS Protein espinas OS=Drosophila pseudoobscura ...    31   2.2  
sp|Q338Z7|HOX8_ORYSJ Homeobox-leucine zipper protein HOX8 OS=Ory...    30   6.5  
sp|Q6V9S9|HOX8_ORYSI Homeobox-leucine zipper protein HOX8 OS=Ory...    30   6.5  
sp|Q48PV0|ZNUC_PSE14 Zinc import ATP-binding protein znuC OS=Pse...    29   8.6  
sp|Q8XJ42|SYV_CLOPE Valyl-tRNA synthetase OS=Clostridium perfrin...    29   8.6  
sp|Q68Y52|RAC2_ORYSJ Rac-like GTP-binding protein 2 OS=Oryza sat...    29   8.6  

>sp|Q8N441|FGRL1_HUMAN Fibroblast growth factor receptor-like 1
           OS=Homo sapiens GN=FGFRL1 PE=1 SV=1
          Length = 504

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
 Frame = -2

Query: 308 GTNTTTAHHHPTSPITLLTP---ACAFIAPALYT----HTHTHTHKARSLSQEAYQH 159
           G      H  P +P  LL P   A   + P LYT    HTHTH+H    +  + +QH
Sbjct: 443 GVGLCEEHGSPAAPQHLLGPGPVAGPKLYPKLYTDIHTHTHTHSHTHSHVEGKVHQH 499


>sp|Q52KL1|FIT2_DANRE Fat-inducing protein 2 OS=Danio rerio GN=fit2
           PE=2 SV=1
          Length = 252

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 271 EVGWWWAVVVLVPFALYSRPFIVGDFETYRHLTIAALA 384
           +V W W +V+L+PF  YS  +I       R LT   +A
Sbjct: 64  KVSWGWTIVLLLPFIAYSNFYIKSHMFALRRLTSLLVA 101


>sp|Q292U5|ESN_DROPS Protein espinas OS=Drosophila pseudoobscura
           pseudoobscura GN=esn PE=3 SV=1
          Length = 795

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/64 (32%), Positives = 25/64 (39%)
 Frame = -1

Query: 432 SGDVVGNVEASDVITTGEGSDGEMSVRLKVSHDEGPAVQGKGHQHYHCPPPSHLAYNITY 253
           S +V     +S++     GS G  S     SH   P       Q  HC PPSHL  N   
Sbjct: 55  SSNVASTATSSNLDVPSGGSTGSGSGGQTTSHFVSPL------QRRHCQPPSHLPLNSVA 108

Query: 252 PSLR 241
             LR
Sbjct: 109 SPLR 112


>sp|Q338Z7|HOX8_ORYSJ Homeobox-leucine zipper protein HOX8 OS=Oryza
           sativa subsp. japonica GN=HOX8 PE=2 SV=1
          Length = 305

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 405 ASDVITTGEGSDGEMSVRLKVSHDEGPAVQGKGHQHYHCPPPSHLAYN 262
           A+++    +  DG+MSV+L+       AV    HQ    PPP  LAYN
Sbjct: 151 AAEIADLRDRVDGQMSVKLE-------AVAADEHQPPPPPPPPPLAYN 191


>sp|Q6V9S9|HOX8_ORYSI Homeobox-leucine zipper protein HOX8 OS=Oryza
           sativa subsp. indica GN=HOX8 PE=2 SV=1
          Length = 281

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 405 ASDVITTGEGSDGEMSVRLKVSHDEGPAVQGKGHQHYHCPPPSHLAYN 262
           A+++    +  DG+MSV+L+       AV    HQ    PPP  LAYN
Sbjct: 127 AAEIADLRDRVDGQMSVKLE-------AVAADEHQPPPPPPPPPLAYN 167


>sp|Q48PV0|ZNUC_PSE14 Zinc import ATP-binding protein znuC
           OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
           Race 6) GN=znuC PE=3 SV=1
          Length = 265

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -2

Query: 356 YVSKSPTMKGLLYKAKGTNTTTAHHHPTSPITLLTPACAFIAPALYTHTHTHTH 195
           +VS  P    L    K   +   +HH       L  A    APA  +HTHTH H
Sbjct: 207 HVSHDPAFVELF--GKNAQSLAIYHHHHDHAHDLHGAVVNDAPATSSHTHTHVH 258


>sp|Q8XJ42|SYV_CLOPE Valyl-tRNA synthetase OS=Clostridium
           perfringens GN=valS PE=3 SV=1
          Length = 880

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 18/62 (29%), Positives = 24/62 (38%)
 Frame = -2

Query: 341 PTMKGLLYKAKGTNTTTAHHHPTSPITLLTPACAFIAPALYTHTHTHTHKARSLSQEAYQ 162
           P + G   KAKG      +    + + LL P   FI   +YTH  T T      +   Y 
Sbjct: 657 PVLYGDDEKAKGVVFNVLYTVLNTGLKLLHPVMPFITEEIYTHLSTETESITIATWPTYD 716

Query: 161 HA 156
            A
Sbjct: 717 EA 718


>sp|Q68Y52|RAC2_ORYSJ Rac-like GTP-binding protein 2 OS=Oryza sativa
           subsp. japonica GN=RAC2 PE=2 SV=1
          Length = 214

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 20  RRRGHTTVVSMEDLRSVGCTLKEI 91
           RRRG TT+   +  RS GC+LK +
Sbjct: 183 RRRGETTMARKKTRRSTGCSLKNL 206
tr_hit_id Q4SR14
Definition tr|Q4SR14|Q4SR14_TETNG Chromosome 11 SCAF14528, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 29
Score (bit) 30.0
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955336|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_N07, 5'
         (459 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4SR14|Q4SR14_TETNG Chromosome 11 SCAF14528, whole genome sho...    30   0.35 
tr|B4LZH2|B4LZH2_DROVI GJ23976 OS=Drosophila virilis GN=GJ23976 ...    37   0.37 
tr|Q0GNK9|Q0GNK9_9ZZZZ Putative uncharacterized protein OS=uncul...    28   0.49 
tr|Q2HCX0|Q2HCX0_CHAGB Predicted protein OS=Chaetomium globosum ...    37   0.64 
tr|Q08CS5|Q08CS5_DANRE Zgc:152760 OS=Danio rerio GN=zgc:152760 P...    28   0.75 
tr|Q4RL58|Q4RL58_TETNG Chromosome 12 SCAF15023, whole genome sho...    27   1.2  
tr|A9V6K0|A9V6K0_MONBE Predicted protein OS=Monosiga brevicollis...    28   1.4  
tr|A8P087|A8P087_BRUMA T-cell receptor beta chain ANA 11, putati...    28   1.4  
tr|B4PYZ8|B4PYZ8_DROYA GE17353 OS=Drosophila yakuba GN=GE17353 P...    35   1.4  
tr|A7USK0|A7USK0_ANOGA AGAP000050-PA (Fragment) OS=Anopheles gam...    28   1.5  
tr|Q4RB26|Q4RB26_TETNG Chromosome undetermined SCAF22420, whole ...    27   1.7  
tr|Q5X4K9|Q5X4K9_LEGPA Putative uncharacterized protein OS=Legio...    35   1.9  
tr|Q5WVZ9|Q5WVZ9_LEGPL Putative uncharacterized protein OS=Legio...    35   1.9  
tr|Q9VWC6|Q9VWC6_DROME Vielfaltig, isoform A OS=Drosophila melan...    35   1.9  
tr|Q7YU17|Q7YU17_DROME LD47819p OS=Drosophila melanogaster GN=vf...    35   1.9  
tr|Q4QA50|Q4QA50_LEIMA Putative uncharacterized protein OS=Leish...    35   1.9  
tr|A8NF15|A8NF15_BRUMA T-cell receptor beta chain ANA 11, putati...    28   1.9  
tr|Q4TGU7|Q4TGU7_TETNG Chromosome undetermined SCAF3465, whole g...    28   2.3  
tr|Q4T2J7|Q4T2J7_TETNG Chromosome undetermined SCAF10255, whole ...    27   2.6  
tr|Q4SUN2|Q4SUN2_TETNG Chromosome undetermined SCAF13860, whole ...    27   2.6  
tr|Q4RSU3|Q4RSU3_TETNG P2X purinoceptor (Fragment) OS=Tetraodon ...    27   2.7  
tr|Q4SI49|Q4SI49_TETNG Chromosome 5 SCAF14581, whole genome shot...    27   2.9  
tr|B7Z5W2|B7Z5W2_HUMAN cDNA FLJ58375, moderately similar to Bifu...    27   3.0  
tr|Q4T7Z3|Q4T7Z3_TETNG Chromosome 2 SCAF7940, whole genome shotg...    27   3.1  
tr|A8J718|A8J718_CHLRE Magnesium chelatase subunit H (Fragment) ...    31   3.2  
tr|Q9PWE1|Q9PWE1_ICTPU Metabotropic glutamate receptor (Fragment...    34   3.2  
tr|B4I7C3|B4I7C3_DROSE GM22706 OS=Drosophila sechellia GN=GM2270...    34   3.2  
tr|B2ABI1|B2ABI1_PODAN Predicted CDS Pa_1_20750 OS=Podospora ans...    27   3.2  
tr|Q4SZT7|Q4SZT7_TETNG Chromosome undetermined SCAF11492, whole ...    27   3.3  
tr|Q4RFD4|Q4RFD4_TETNG Chromosome 8 SCAF15119, whole genome shot...    27   3.3  

>tr|Q4SR14|Q4SR14_TETNG Chromosome 11 SCAF14528, whole genome
           shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00014127001 PE=4 SV=1
          Length = 359

 Score = 30.0 bits (66), Expect(2) = 0.35
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 281 HPTSPITLLTPACAFIAPALYTHTHTHTH 195
           HP  P+     A      + +THTHTHTH
Sbjct: 309 HPQRPLRPAITASGSRGSSKFTHTHTHTH 337



 Score = 26.6 bits (57), Expect(2) = 0.35
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 221 YTHTHTHTHKARS 183
           +THTHTHTH +++
Sbjct: 331 HTHTHTHTHASKT 343


>tr|B4LZH2|B4LZH2_DROVI GJ23976 OS=Drosophila virilis GN=GJ23976 PE=4
            SV=1
          Length = 2919

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 305  TNTTTAHHHPTSPITLLTPACAFIAPALYTHTHTHTH 195
            + TT  HHH   P     P+ A   P  Y+H HTH+H
Sbjct: 1091 STTTAGHHHHCYPAAASPPSHAHAHPHSYSHPHTHSH 1127


>tr|Q0GNK9|Q0GNK9_9ZZZZ Putative uncharacterized protein
           OS=uncultured organism PE=4 SV=1
          Length = 140

 Score = 28.1 bits (61), Expect(2) = 0.49
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 302 NTTTAHHHPTSPITLLTPACAFIAPALYTHTHTHTH 195
           +T   H H  +     TP         +THTHTHTH
Sbjct: 46  HTPHTHTHTHTHTHTHTPTHTHTHTHTHTHTHTHTH 81



 Score = 28.1 bits (61), Expect(2) = 0.49
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 221 YTHTHTHTHKARSLSQE 171
           +THTHTHTH  R   +E
Sbjct: 90  HTHTHTHTHAERERERE 106


>tr|Q2HCX0|Q2HCX0_CHAGB Predicted protein OS=Chaetomium globosum
           GN=CHGG_01934 PE=4 SV=1
          Length = 631

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
 Frame = -2

Query: 317 KAKGTNTTTAHHHPTSPITLLTPACAFIA--------PALYTHTHTHTH 195
           K K  + T  HHHP  P     PA A           P  +THTHTHTH
Sbjct: 172 KNKTLSPTHNHHHPLPPPPAAAPAPAPTTTTATTSPTPPYHTHTHTHTH 220


>tr|Q08CS5|Q08CS5_DANRE Zgc:152760 OS=Danio rerio GN=zgc:152760 PE=2
           SV=1
          Length = 334

 Score = 28.1 bits (61), Expect(2) = 0.75
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 224 LYTHTHTHTH 195
           +YTHTHTHTH
Sbjct: 230 IYTHTHTHTH 239



 Score = 27.3 bits (59), Expect(2) = 0.75
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 221 YTHTHTHTHKARSLSQEAY 165
           +THTHTHTH     SQ  +
Sbjct: 239 HTHTHTHTHTLHYRSQTGF 257


>tr|Q4RL58|Q4RL58_TETNG Chromosome 12 SCAF15023, whole genome
           shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00032636001 PE=4 SV=1
          Length = 649

 Score = 27.3 bits (59), Expect(2) = 1.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 242 AFIAPALYTHTHTHTH 195
           +F A   +THTHTHTH
Sbjct: 395 SFFAIFTHTHTHTHTH 410



 Score = 27.3 bits (59), Expect(2) = 1.2
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 221 YTHTHTHTHK 192
           +THTHTHTHK
Sbjct: 412 HTHTHTHTHK 421


>tr|A9V6K0|A9V6K0_MONBE Predicted protein OS=Monosiga brevicollis
           GN=33611 PE=4 SV=1
          Length = 3940

 Score = 28.1 bits (61), Expect(2) = 1.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 221 YTHTHTHTHKARSL 180
           +THTHTHTH  R+L
Sbjct: 146 HTHTHTHTHVERAL 159



 Score = 26.2 bits (56), Expect(2) = 1.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 239 FIAPALYTHTHTHTH 195
           F+    +THTHTHTH
Sbjct: 132 FLDTHTHTHTHTHTH 146


>tr|A8P087|A8P087_BRUMA T-cell receptor beta chain ANA 11, putative
           (Fragment) OS=Brugia malayi GN=Bm1_13290 PE=4 SV=1
          Length = 133

 Score = 27.7 bits (60), Expect(2) = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 221 YTHTHTHTHKARSLSQEAYQH 159
           +THTHTHTH    +  + + H
Sbjct: 95  HTHTHTHTHTHTHIHTQTHTH 115



 Score = 26.9 bits (58), Expect(2) = 1.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 296 TTAHHHPTSPITLLTPACAFIAPALYTHTHTHTH 195
           T +H H    + + T          +THTHTHTH
Sbjct: 50  TQSHIHTQIYVHIYTHIHTHTHTHTHTHTHTHTH 83


>tr|B4PYZ8|B4PYZ8_DROYA GE17353 OS=Drosophila yakuba GN=GE17353 PE=4
           SV=1
          Length = 1584

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
 Frame = -2

Query: 344 SPTMKGLLYKAKGT----NTTTAHHHPTSPITLLTPACAFIAPA----------LYTHTH 207
           S  M+GLL +   T     TT A    T+ IT  T A      +           +THTH
Sbjct: 777 SSQMRGLLNETTTTPPPTTTTRAPQITTTAITTTTAATTVAIKSEQMEDSNHTHTHTHTH 836

Query: 206 THTHKARSLSQE 171
           THTH   SLSQ+
Sbjct: 837 THTHPNHSLSQD 848


>tr|A7USK0|A7USK0_ANOGA AGAP000050-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP000050 PE=4 SV=1
          Length = 61

 Score = 27.7 bits (60), Expect(2) = 1.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 233 APALYTHTHTHTH 195
           +P  +THTHTHTH
Sbjct: 20  SPKTHTHTHTHTH 32



 Score = 26.9 bits (58), Expect(2) = 1.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 221 YTHTHTHTHKARS 183
           +THTHTHTH A +
Sbjct: 26  HTHTHTHTHTAHT 38