DK955339 |
Clone id |
TST39A01NGRL0022_N10 |
Library |
TST39 |
Length |
570 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_N10. 5' end sequence. |
Accession |
DK955339 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CCAAACCCTCGCTAAACCTCTCCCCCTCCCAGCAGGTTGACGATGACGATGACGCTGCGT GTTTGAATTCTAAGCGCCGCTTTTGCGAAGCCCTAGCTCGTCAGACATGTCTCGGCAGGT GCTCTCTAGGCATGGTCACCTCAGAAGAGCTTTAGTTCCACCTGCTTCCTTTTTCAGGGC CTGCGCAAGCTCCAGCTCGAGTTTTTATCACGGAAGCCACGCTGAGCTCCCGCGTTCTTT TTCCTCCCTTTCCGATGGGGTAGAGCTTCTCCACATTCCATCGAAGTGGTTTGCAGCAGT TACATCCAAGCTCCAAGTTGGTTCCGTCCCCCCTGCAAGCGCCAAGCCAGAGCAGAAACC CAATCAGAGTGGGAAATCCCAACCACTCAGTGTCTCTCCAAGGAAGAGAGACTCGAATAG CAGAGCAAGAGATGGTGCTACATTTATGTTCTCAAATGCTTTTCTGCGTACTAGTCTGCA TTCCAATTGGACAAGCTCAAAACTCTCCAGAGCTATTCATTCTGCTATTGGCGACGATGA TAGTGATGAATCGGACGAGCTTGATGATTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9R1J8 |
Definition |
sp|Q9R1J8|P3H1_RAT Prolyl 3-hydroxylase 1 OS=Rattus norvegicus |
Align length |
39 |
Score (bit) |
33.5 |
E-value |
0.76 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955339|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_N10, 5' (570 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9R1J8|P3H1_RAT Prolyl 3-hydroxylase 1 OS=Rattus norvegicus G... 33 0.76 sp|Q3V1T4|P3H1_MOUSE Prolyl 3-hydroxylase 1 OS=Mus musculus GN=L... 33 0.99 sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-conta... 33 0.99 sp|Q9LRR7|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, c... 32 2.2 sp|Q89A36|PTM3C_BUCBP PTS system mannitol-specific EIICBA compon... 32 2.9 sp|Q0BGI1|PPK_BURCM Polyphosphate kinase OS=Burkholderia ambifar... 31 3.8 sp|P52031|G6PI_DROYA Glucose-6-phosphate isomerase OS=Drosophila... 31 4.9 sp|O94833|BPAEA_HUMAN Bullous pemphigoid antigen 1, isoforms 6/9... 31 5.0 sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=... 30 6.4 sp|Q9IA14|HXD10_HETFR Homeobox protein Hox-D10 OS=Heterodontus f... 30 6.4 sp|Q711G1|G6PI_AGABI Glucose-6-phosphate isomerase OS=Agaricus b... 30 6.4 sp|O44248|RL5_ANOGA 60S ribosomal protein L5 OS=Anopheles gambia... 30 6.5 sp|Q91ZU6|BPA1_MOUSE Bullous pemphigoid antigen 1, isoforms 1/2/... 30 6.5 sp|Q5TCY1|TTBK1_HUMAN Tau-tubulin kinase 1 OS=Homo sapiens GN=TT... 30 8.4 sp|P52030|G6PI_DROSI Glucose-6-phosphate isomerase OS=Drosophila... 30 8.4 sp|P52029|G6PI_DROME Glucose-6-phosphate isomerase OS=Drosophila... 30 8.4
>sp|Q9R1J8|P3H1_RAT Prolyl 3-hydroxylase 1 OS=Rattus norvegicus GN=Lepre1 PE=1 SV=1 Length = 728
Score = 33.5 bits (75), Expect = 0.76 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3
Query: 6 PSLNLSPSQQVDDDDDAACLNSKRRFCEALARQTCLGRC 122 P L+L P+ ++ D AA L+ R F L R CL RC Sbjct: 77 PDLDLGPASSLNHDPGAAALHDLRFFGALLRRAACLRRC 115
>sp|Q3V1T4|P3H1_MOUSE Prolyl 3-hydroxylase 1 OS=Mus musculus GN=Lepre1 PE=2 SV=2 Length = 739
Score = 33.1 bits (74), Expect = 0.99 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = +3
Query: 6 PSLNLSPSQQVDDDDDAACLNSKRRFCEALARQTCLGRC 122 P L+L P + D AA L+ R F L R CL RC Sbjct: 88 PDLDLGPDPSLSQDPGAAALHDLRFFGAVLRRAACLRRC 126
>sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=1 Length = 999
Score = 33.1 bits (74), Expect = 0.99 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = +2
Query: 320 GSVPPASAKPEQKPNQSGKSQPLSVSPRKRDSNSRARD 433 G PP P+ P+ S S LS SP+ RARD Sbjct: 144 GGTPPGGRSPDSAPSSSSASSSLSSSPQPPPRGDRARD 181
>sp|Q9LRR7|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1 Length = 599
Score = 32.0 bits (71), Expect = 2.2 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = +2
Query: 212 GSHAELPRSFSSLSDGVELLHIPSKWFAAVTSKLQVGSV---PPASAKPEQKPNQSGKSQ 382 G+H + P S S SD +P + VT KL V S PPA P+Q N S Sbjct: 17 GNHTQPPLSSSQSSDLSYCSSLPMA--SRVTRKLNVSSALHTPPALHFPKQSSN----SP 70
Query: 383 PLSVSPRKRDSNSR 424 + V P+ ++SN++ Sbjct: 71 AIVVKPKAKESNTK 84
>sp|Q89A36|PTM3C_BUCBP PTS system mannitol-specific EIICBA component OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=mtlA PE=3 SV=1 Length = 640
Score = 31.6 bits (70), Expect = 2.9 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3
Query: 120 CSLGMVTSEEL*FHLLPFSGPAQAPARVFITEATLSSRVLFP 245 C LG V + + HLLPF PA++F ++ VLFP Sbjct: 159 CFLGYVVNLMINNHLLPFIAILIEPAKIFFLNNVINHGVLFP 200
>sp|Q0BGI1|PPK_BURCM Polyphosphate kinase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=ppk PE=3 SV=1 Length = 687
Score = 31.2 bits (69), Expect = 3.8 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +2
Query: 221 AELPRSFSSLSDGVELLHIPSKWFAAVTSKLQVGSVPPASAKPEQKPNQSGKSQPL 388 A P F ++ DG LLH P + F V LQ + P+ +Q ++G PL Sbjct: 327 ANAPAMFDAIDDGDILLHHPYESFQPVLELLQQAAKDPSVVAIKQTIYRTGTDSPL 382
>sp|P52031|G6PI_DROYA Glucose-6-phosphate isomerase OS=Drosophila yakuba GN=Pgi PE=3 SV=1 Length = 558
Score = 30.8 bits (68), Expect = 4.9 Identities = 17/65 (26%), Positives = 32/65 (49%) Frame = +3
Query: 204 FITEATLSSRVLFPPFPMG*SFSTFHRSGLQQLHPSSKLVPSPLQAPSQSRNPIRVGNPN 383 F+++A + + P G + + Q +H ++L+P AP+Q+ NPI G + Sbjct: 367 FVSKAGKAVKYSTGPIVWGEPGTNGQHAFYQLIHQGTRLIPCDFIAPAQTHNPI-AGGKH 425
Query: 384 HSVSL 398 H + L Sbjct: 426 HKILL 430
>sp|O94833|BPAEA_HUMAN Bullous pemphigoid antigen 1, isoforms 6/9/10 OS=Homo sapiens GN=DST PE=1 SV=3 Length = 5171
Score = 30.8 bits (68), Expect = 5.0 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +1
Query: 280 IEVVCSSYIQAPSWFRPPCKRQARAETQSEWEIPTTQCLSKEERLE*QSKR 432 I+ VCS P RP + +R T +IPT Q S +L+ SKR Sbjct: 5121 IQSVCSDVETVPQTHRPTPRAGSRPSTAKPSKIPTPQRKSPASKLDKSSKR 5171
>sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo sapiens GN=MLL3 PE=1 SV=3 Length = 4911
Score = 30.4 bits (67), Expect = 6.4 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 9/100 (9%) Frame = +3
Query: 180 PAQAPARVFITEATLSSRVLFPPFPMG*SFSTFHRSGLQQLHPSSKLVPSPLQAP----- 344 P AP+R+ I ++ ++ PP P S + + + P +K+V +P P Sbjct: 1855 PPPAPSRIPIQDSLSQAQTSQPPSPQVFSPGSSNSRPPSPMDPYAKMVGTPRPPPVGHSF 1914
Query: 345 --SQSRNPIRVGNPNHSVS--LQGRETRIAEQEMVLHLCS 452 S P+ P SVS LQ ET V LCS Sbjct: 1915 SRRNSAAPVENCTPLSSVSRPLQMNETTANRPSPVRDLCS 1954
>sp|Q9IA14|HXD10_HETFR Homeobox protein Hox-D10 OS=Heterodontus francisci GN=HOXD10 PE=3 SV=1 Length = 336
Score = 30.4 bits (67), Expect = 6.4 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 10/79 (12%) Frame = +2
Query: 305 SKLQVGSVPPASAKPEQKPNQSGKSQPLSV-----SPRKRDSNSRARDGATFM-----FS 454 SKLQV S PP K +KPN ++ + V PR + ++ A AT + Sbjct: 186 SKLQVSSQPPMERKINEKPNAQESTKGIYVESPEPKPRLLEVSATAEGAATSSELSDNET 245
Query: 455 NAFLRTSLHSNWTSSKLSR 511 ++T + SNW ++K R Sbjct: 246 KEEIKTPI-SNWLTAKSGR 263
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0UC76 |
Definition |
tr|Q0UC76|Q0UC76_PHANO Putative uncharacterized protein OS=Phaeosphaeria nodorum |
Align length |
80 |
Score (bit) |
35.4 |
E-value |
2.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955339|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_N10, 5' (570 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q0UC76|Q0UC76_PHANO Putative uncharacterized protein OS=Phaeo... 35 2.2 tr|A7QZM7|A7QZM7_VITVI Chromosome undetermined scaffold_279, who... 35 2.9 tr|A5BBD3|A5BBD3_VITVI Putative uncharacterized protein OS=Vitis... 35 2.9 tr|Q4WQJ1|Q4WQJ1_ASPFU Lysine-specific histone demethylase Aof2,... 35 3.8 tr|Q802I7|Q802I7_LEUAT Zinc finger protein (Fragment) OS=Leucost... 34 5.0 tr|A0MVW8|A0MVW8_SERCA ZENK (Fragment) OS=Serinus canaria PE=2 SV=1 34 5.0 tr|B0Y4Q4|B0Y4Q4_ASPFC Flavin-containing amine oxidase, putative... 34 5.0 tr|B0D0B5|B0D0B5_LACBS Predicted protein OS=Laccaria bicolor (st... 34 5.0 tr|Q802I3|Q802I3_VERVI Zinc finger protein (Fragment) OS=Vermivo... 34 6.5 tr|B4ZBQ6|B4ZBQ6_TURSY Early growth response 1 (Fragment) OS=Tur... 34 6.5 tr|Q35059|Q35059_MARPO AtpA intron1 ORF OS=Marchantia polymorpha... 34 6.5 tr|B6KGG7|B6KGG7_TOXGO Putative uncharacterized protein OS=Toxop... 34 6.5 tr|A9Y044|A9Y044_9HEXA Glucose-6-phosphate isomerase (Fragment) ... 34 6.5 tr|B4ZBD9|B4ZBD9_9PASS Early growth response 1 (Fragment) OS=Cli... 33 8.5 tr|B1WBP9|B1WBP9_RAT Lepre1 protein OS=Rattus norvegicus GN=Lepr... 33 8.5 tr|A1TV56|A1TV56_ACIAC Uncharacterized protein UPF0065 OS=Acidov... 33 8.5 tr|B7QDQ5|B7QDQ5_IXOSC Putative uncharacterized protein OS=Ixode... 33 8.5 tr|A7SXL9|A7SXL9_NEMVE Predicted protein OS=Nematostella vectens... 33 8.5 tr|A7SK03|A7SK03_NEMVE Predicted protein OS=Nematostella vectens... 33 8.5 tr|A7RZF7|A7RZF7_NEMVE Predicted protein OS=Nematostella vectens... 33 8.5 tr|Q4WY69|Q4WY69_ASPFU C6 transcription factor (Mut3), putative ... 33 8.5 tr|B8MV51|B8MV51_9EURO Kinesin, putative OS=Talaromyces stipitat... 33 8.5 tr|B8MJ88|B8MJ88_9EURO Putative uncharacterized protein OS=Talar... 33 8.5 tr|B0XX86|B0XX86_ASPFC C6 transcription factor (Mut3), putative ... 33 8.5
>tr|Q0UC76|Q0UC76_PHANO Putative uncharacterized protein OS=Phaeosphaeria nodorum GN=SNOG_10638 PE=4 SV=1 Length = 371
Score = 35.4 bits (80), Expect = 2.2 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = -3
Query: 442 CSTISCSAIRVSL-PWRDTEWLGFPTLIGFLLWLGACRGDGTNLELGCNCCKPLRWNVEK 266 C+ IS + + + P+R W + T+ + W GT L +GC C+P +N +K Sbjct: 110 CTKISILCLYLHIFPYRWLAWSSYVTMAIIVAWT-----IGTIL-VGCLICQPFAFNWDK 163
Query: 265 LYPIGKGGKRTRELSVASVI 206 P GK G + ++ +I Sbjct: 164 TIPDGKCGDQVTSFTITGII 183
>tr|A7QZM7|A7QZM7_VITVI Chromosome undetermined scaffold_279, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00010722001 PE=4 SV=1 Length = 301
Score = 35.0 bits (79), Expect = 2.9 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3
Query: 439 STISCSAIRVSLPWRDTEWLGFPTLIGFLLWLGAC 335 S +SCS+I SL W+ +W G P G ++ + AC Sbjct: 174 SLLSCSSIAFSLSWKLKQWWGLPLFGGIMIIITAC 208
>tr|A5BBD3|A5BBD3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010305 PE=4 SV=1 Length = 591
Score = 35.0 bits (79), Expect = 2.9 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3
Query: 439 STISCSAIRVSLPWRDTEWLGFPTLIGFLLWLGAC 335 S +SCS+I SL W+ +W G P G ++ + AC Sbjct: 464 SLLSCSSIAFSLSWKLKQWWGLPLFGGIMIIITAC 498
>tr|Q4WQJ1|Q4WQJ1_ASPFU Lysine-specific histone demethylase Aof2, putative OS=Aspergillus fumigatus GN=AFUA_4G13000 PE=4 SV=1 Length = 1081
Score = 34.7 bits (78), Expect = 3.8 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%) Frame = +2
Query: 209 HGSHAELPRSFSSLSDGV-ELLHIPSKWFAAVTSKLQVGSVPPASAKPEQKPNQSGKSQP 385 HG++ R+ S + + V + IP+ +++G+ + K ++ P +G S P Sbjct: 860 HGAYLSGLRAASEIIESVLGPIEIPNPLVPEKGKAIELGTSVATAQKKKEPPCSNGFSAP 919
Query: 386 LSVSPRKRDSNSRARDGATFMFSNAFLRTSLHSNWTSSKLSRAIHSAIG 532 +S S D+++ AR +F A + + W AIH+ +G Sbjct: 920 VSTSAHPTDASAPARSNNSFSGDTALRQAYEQAMWA------AIHAELG 962
>tr|Q802I7|Q802I7_LEUAT Zinc finger protein (Fragment) OS=Leucosticte atrata GN=ZENK PE=4 SV=1 Length = 396
Score = 34.3 bits (77), Expect = 5.0 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = +2
Query: 278 PSKWFAAVTSKLQVGSVPPASAKPEQKPNQSGKSQPLSVSPRKRDSNSRARDGATFMFSN 457 P F+ V+ + + + PP S P+ S +S PLS S + D+N TF S+ Sbjct: 25 PEPLFSLVSGLVGMANAPPTSTPTSSSPSSSSQSSPLSCSVQASDNNPIYSAAPTFPNSS 84
Query: 458 A 460 + Sbjct: 85 S 85
>tr|A0MVW8|A0MVW8_SERCA ZENK (Fragment) OS=Serinus canaria PE=2 SV=1 Length = 390
Score = 34.3 bits (77), Expect = 5.0 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = +2
Query: 278 PSKWFAAVTSKLQVGSVPPASAKPEQKPNQSGKSQPLSVSPRKRDSNSRARDGATFMFSN 457 P F+ V+ + + + PP S P+ S +S PLS S + D+N TF S+ Sbjct: 7 PEPLFSLVSGLVGMANAPPTSTPTSSSPSSSSQSSPLSCSVQASDNNPIYSAAPTFPNSS 66
Query: 458 A 460 + Sbjct: 67 S 67
>tr|B0Y4Q4|B0Y4Q4_ASPFC Flavin-containing amine oxidase, putative OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_069900 PE=4 SV=1 Length = 1081
Score = 34.3 bits (77), Expect = 5.0 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%) Frame = +2
Query: 209 HGSHAELPRSFSSLSDGV-ELLHIPSKWFAAVTSKLQVGSVPPASAKPEQKPNQSGKSQP 385 HG++ R+ S + + V + IP+ +++G+ + K ++ P +G S P Sbjct: 860 HGAYLSGLRAASEIIESVLGPIEIPNPLVPEKGKAVELGTSVATAQKKKEPPCSNGFSAP 919
Query: 386 LSVSPRKRDSNSRARDGATFMFSNAFLRTSLHSNWTSSKLSRAIHSAIG 532 +S S D+++ AR +F A + + W AIH+ +G Sbjct: 920 VSTSAHPTDASAPARSNNSFSGDTALRQAYEQAMWA------AIHAELG 962
>tr|B0D0B5|B0D0B5_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82) GN=LACBIDRAFT_293033 PE=4 SV=1 Length = 1541
Score = 34.3 bits (77), Expect = 5.0 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 9/67 (13%) Frame = -2
Query: 386 VVGISHSDWVSALAWRLQ--GGR-------NQLGAWM*LLQTTSMECGEALPHRKGRKKN 234 VVGI+ SD+++ WRL GG Q+G+W L + + EAL R+ R++ Sbjct: 17 VVGITPSDFITGGTWRLNCAGGHAIRLVLWQQVGSWRGLNKNLGINFEEALEKRRWRRET 76
Query: 233 AGAQRGF 213 A G+ Sbjct: 77 AAMTGGW 83
>tr|Q802I3|Q802I3_VERVI Zinc finger protein (Fragment) OS=Vermivora virginiae GN=ZENK PE=4 SV=1 Length = 378
Score = 33.9 bits (76), Expect = 6.5 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = +2
Query: 278 PSKWFAAVTSKLQVGSVPPASAKPEQKPNQSGKSQPLSVSPRKRDSNSRARDGATFMFSN 457 P F+ V+ + + + PP S P+ S +S PLS S + +SN TF S+ Sbjct: 7 PEPLFSLVSGLVGMANAPPTSTPTSSSPSSSSQSSPLSCSVQASESNPIYSAAPTFPNSS 66
Query: 458 A 460 + Sbjct: 67 S 67
>tr|B4ZBQ6|B4ZBQ6_TURSY Early growth response 1 (Fragment) OS=Turnix sylvatica GN=EGR1 PE=4 SV=1 Length = 398
Score = 33.9 bits (76), Expect = 6.5 Identities = 18/61 (29%), Positives = 30/61 (49%) Frame = +2
Query: 278 PSKWFAAVTSKLQVGSVPPASAKPEQKPNQSGKSQPLSVSPRKRDSNSRARDGATFMFSN 457 P F+ V+ + + + PPAS P+ S +S PLS S + +++ TF SN Sbjct: 24 PEPLFSLVSGLVGMANAPPASTPSSSSPSSSSQSPPLSCSVQASENSPIYSAAPTFPNSN 83
Query: 458 A 460 + Sbjct: 84 S 84
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