DK955342
Clone id TST39A01NGRL0022_N13
Library
Length 574
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_N13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CGGCACAGTTCATCGCAATTTGAAGCTCCCTTTAGTTTTTTGGGTTCTCTCTCTGTGGGT
AGCAACGCTAGGTTTCCTGCTTCTCGCAACGTCGCACACAAATTATTTTGACAGAGGCTC
GCTGTCTTGAAGAGTTACGAGCTCGCTCTCTGCAGACGTCTCGGATCAGGTCACGATAAG
GGTGCTGTTAATTTGTTACGTCTGTCGCCCCTTCTCAAGCAAGATTGCAATACACAGGTG
CTGTGGGTTCATCCCCATCATCTGACTGCAGATTGTCAATTCAAAAGAATTTTTTTAGCA
TTTGGAAACATTGAAGGGAATAGTGTTGGCCTTCGCTTCAGTGAGCCTTCATTTGTTTAC
CGACTGTTGAATTCTAATTATCCCACGCATCCAAGGAGACGCAAAGATGACCCGTGTGCT
AGTCCAACGAGGGCAAGGTTCCTCAAATGTCAGGCCAACTTCATCTTCCTCATCCACGGC
TGCTCCTCCACCACCACCCCCTCCTCCTCTCCCGCCGCCACCTTCAACTTCACTGAACTT
CAAAATACAAAAGAGGATTCAAAGGAATCAAAGG
■■Homology search results ■■ -
sp_hit_id Q7SBU6
Definition sp|Q7SBU6|VID21_NEUCR Chromatin modification-related protein vid-21 OS=Neurospora crassa
Align length 76
Score (bit) 30.8
E-value 5.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955342|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_N13, 5'
(574 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q7SBU6|VID21_NEUCR Chromatin modification-related protein vid... 31 5.1

>sp|Q7SBU6|VID21_NEUCR Chromatin modification-related protein vid-21
OS=Neurospora crassa GN=vid-21 PE=3 SV=1
Length = 2189

Score = 30.8 bits (68), Expect = 5.1
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = -2

Query: 228 AILLEKGRQT*QINSTLIVT*SETSAESELVTLQDSEPLSK*FVCDVARSRKPSVATHRE 49
A+ LEK QIN+ ET E++ T Q S P ++ V D P + THR
Sbjct: 552 AVSLEKTVPGIQINAP-----PETETETQARTSQSSHPDTESAVADEEGDMPPGLLTHRL 606

Query: 48 RTQKTKGSFKLR*TVP 1
++ T+ + R +VP
Sbjct: 607 KSLSTRLRERRRKSVP 622


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955342|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_N13, 5'
(574 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******