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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955356
Clone id TST39A01NGRL0022_O03
Library
Length 532
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_O03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTTCTCCAAAGCTATACCTAGTCATCTAGTCCCTCTTGTGCTGACGGCGGAGCTCTGCGT
GCTCGCTTCCTTCGATAGGAGTTCTTCACTTTTCGGGGCTAATCTAATCAATTTATGGCA
AGAGGAAGGAAGCTCAAGCGGGGGGGAGCTGCCAAGGATGCTGACAAAACGACAGACCCT
AAAGCCATGTATGATTCTGTTGACAGACCAAGCGGGGAGGTTGCACCTCATGGCAGCACC
CCCGAAGACGCTGTTGAAGCTCCTGATGAGGTGCAACCTGAGACGATGAAGAAGGGCTGC
CACAAAGAGCGACACGCCGCATTACACCCATGCGTATGGTGACATGACACCTGCACATAA
GGATACGCCCAACAAACATCTGCTAACGCGAAGGGGAAAGAAAAACAAGACATCTTCTGG
CGATACTCCTGTTCCGGAGGACAACATTACTGACTGTATCTGGACATCACTCTCATGTGC
GATTCCGAGACTAAGAATGATTGCTTCAAGTACCGTGTGTTTGGGCTTCCTG
■■Homology search results ■■ -
sp_hit_id Q8IZF2
Definition sp|Q8IZF2|GP116_HUMAN Probable G-protein coupled receptor 116 OS=Homo sapiens
Align length 49
Score (bit) 37.0
E-value 0.059
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955356|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_O03, 5'
         (532 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IZF2|GP116_HUMAN Probable G-protein coupled receptor 116 OS...    37   0.059
sp|P20793|MAK_RAT Serine/threonine-protein kinase MAK OS=Rattus ...    34   0.39 
sp|P53872|YNT0_YEAST Uncharacterized protein YNL190W OS=Saccharo...    33   1.1  
sp|Q54CI8|DC1L1_DICDI Cytoplasmic dynein 1 light intermediate ch...    31   4.3  
sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein OS=H...    30   7.3  
sp|Q0I6W0|NDHI_SYNS3 NAD(P)H-quinone oxidoreductase subunit I OS...    30   7.3  
sp|Q5E284|ZNUC2_VIBF1 Zinc import ATP-binding protein znuC 2 OS=...    30   9.5  
sp|Q9Y3S1|WNK2_HUMAN Serine/threonine-protein kinase WNK2 OS=Hom...    30   9.5  
sp|Q8BHB9|CLIC6_MOUSE Chloride intracellular channel protein 6 O...    30   9.5  

>sp|Q8IZF2|GP116_HUMAN Probable G-protein coupled receptor 116
           OS=Homo sapiens GN=GPR116 PE=1 SV=2
          Length = 1346

 Score = 37.0 bits (84), Expect = 0.059
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 440 PPEQEYRQKMSCFSFPFALADVCWAYPYVQVSCHHTHGCNAACRSLWQP 294
           P  +E  +K  C+   F  + V W    V V CH T   NAA  S+W P
Sbjct: 610 PAAKEVNKKQVCYKHNFNASSVSWCSKTVDVCCHFT---NAANNSVWSP 655


>sp|P20793|MAK_RAT Serine/threonine-protein kinase MAK OS=Rattus
           norvegicus GN=Mak PE=2 SV=1
          Length = 622

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 154 KDADKTTDPKAMYDSVDRPSGEVAP-HGSTPEDAVEAPDE--VQPETMKKGCHKE 309
           K +    DPK + + +D+P+G+  P  G  P  A++ P    VQP   ++G HK+
Sbjct: 313 KPSSSERDPKPLPNILDQPAGQPQPKQGHQPLQAIQPPQNTVVQPPPKQQGHHKQ 367


>sp|P53872|YNT0_YEAST Uncharacterized protein YNL190W
           OS=Saccharomyces cerevisiae GN=YNL190W PE=1 SV=1
          Length = 204

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 302 TKSDTPHYT--HAYGDMTPAHKD-TPNKHLLTRRGKKNKTSSGDTP 430
           +KS TP++T  H YG      K  TPN     + GK NKTS   TP
Sbjct: 58  SKSKTPNHTGTHKYGKFNKTSKSKTPNHTGTHKYGKFNKTSKSKTP 103



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 302 TKSDTPHYT--HAYGDMTPAHKD-TPNKHLLTRRGKKNKTSSGDTP 430
           +KS TP++T  H YG      K  TPN     + GK NKTS   TP
Sbjct: 78  SKSKTPNHTGTHKYGKFNKTSKSKTPNHTGTHKYGKFNKTSKSKTP 123



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 302 TKSDTPHYT--HAYGDMTPAHKD-TPNKHLLTRRGKKNKTSSGDTP 430
           +KS TP++T  H YG      K  TPN     + GK NKTS   TP
Sbjct: 98  SKSKTPNHTGTHKYGKFNKTSKSKTPNHTGTHKYGKFNKTSKSKTP 143



 Score = 32.3 bits (72), Expect = 1.5
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 302 TKSDTPHYTHAYGDMTPAHKD-TPNKHLLTRRGKKNKTSSGDTP 430
           T + + H TH YG      K  TPN     + GK NKTS   TP
Sbjct: 40  TTTTSTHTTHKYGKFNKTSKSKTPNHTGTHKYGKFNKTSKSKTP 83


>sp|Q54CI8|DC1L1_DICDI Cytoplasmic dynein 1 light intermediate chain
           1 OS=Dictyostelium discoideum GN=dync1li1 PE=3 SV=1
          Length = 504

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 107 INLWQEEGSSSGGELPRMLTKRQTLKPCMILLT 205
           IN W  EG +S  +L +    ++ +K CM+++T
Sbjct: 82  INYWSLEGEASQNDLLKFSLNKENIKNCMVIIT 114


>sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein OS=Homo
            sapiens GN=RP1L1 PE=1 SV=3
          Length = 2480

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
 Frame = +1

Query: 1    VLQSYT*SSSPSCADGGALRARFLR*EFFTFRG*SNQFMARGRKLKRGGAAKDADKTTDP 180
            +L +Y  +   + A GG LR   +        G  +     G   + G  + + D   DP
Sbjct: 969  ILMTYELADETTGAAGGGLRGPEVD------PGDDHSLEGLGEPAQAGQQSLEGDPGQDP 1022

Query: 181  K---AMYDSVDR--PSGEVAPHGSTPEDAVEAPDE 270
            +   A+  S D    SGE  P G+ PE   EAP E
Sbjct: 1023 EPEGALLGSSDTGPQSGEGVPQGAAPEGVSEAPAE 1057


>sp|Q0I6W0|NDHI_SYNS3 NAD(P)H-quinone oxidoreductase subunit I
           OS=Synechococcus sp. (strain CC9311) GN=ndhI PE=3 SV=1
          Length = 219

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 169 TTDPKA--MYDSVDRPSGEVAPHGSTPE--DAVEAPDEVQPETMKKGCHK 306
           TTDP    + + V  P+GEV PHG +P+   A + P+++  E    G  K
Sbjct: 150 TTDPSVQPLRELVYLPAGEVQPHGVSPDRPRAGKLPEQILEELKAAGSMK 199


>sp|Q5E284|ZNUC2_VIBF1 Zinc import ATP-binding protein znuC 2
           OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=znuC2
           PE=3 SV=1
          Length = 243

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 119 QEEGSSSGGELPRMLTKRQTLKPCMILLTDQA 214
           Q+  S SGG+L R+L  R  L+  M+LL D+A
Sbjct: 114 QQLNSLSGGQLQRVLLARALLEEPMLLLLDEA 145


>sp|Q9Y3S1|WNK2_HUMAN Serine/threonine-protein kinase WNK2 OS=Homo
            sapiens GN=WNK2 PE=1 SV=4
          Length = 2297

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 151  AKDADKTTDPKAMYDSVDRPSGEVAPHGSTPEDAVEAPDEVQP 279
            A +A  T D  A  + +  P+ E +PH  TP+ A+  P  + P
Sbjct: 1496 APEAASTRDASAPREPLPPPAPEPSPHSGTPQPALGQPAPLLP 1538


>sp|Q8BHB9|CLIC6_MOUSE Chloride intracellular channel protein 6
           OS=Mus musculus GN=Clic6 PE=2 SV=1
          Length = 596

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
 Frame = +1

Query: 145 GAAKDADKTTDPKAMYDSVDRPSGEVA-----PHGSTPEDAVEAPDEVQPETMKKGCHKE 309
           G A+  D  T P+A         GE       P G+ P+ A EAP   Q + M  G   +
Sbjct: 73  GGAQAQDPRTGPEAETPGASGAPGEAEAAERDPEGAIPQGAEEAPSAQQVQGMSSGLDSQ 132

Query: 310 RHA 318
             A
Sbjct: 133 GEA 135
tr_hit_id B8LQS0
Definition tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 22
Score (bit) 40.4
E-value 0.057
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955356|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_O03, 5'
         (532 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea...    40   0.057
tr|B8LNW7|B8LNW7_PICSI Putative uncharacterized protein OS=Picea...    40   0.098
tr|A9NVJ6|A9NVJ6_PICSI Putative uncharacterized protein OS=Picea...    40   0.098
tr|A5BDJ5|A5BDJ5_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A7PU02|A7PU02_VITVI Chromosome chr7 scaffold_31, whole genome...    37   0.49 
tr|Q5TF06|Q5TF06_HUMAN Novel transcript OS=Homo sapiens GN=RP3-3...    37   0.62 
tr|B4DTV3|B4DTV3_HUMAN cDNA FLJ57199, highly similar to Probable...    37   0.62 
tr|B4DLD2|B4DLD2_HUMAN cDNA FLJ57030, highly similar to Probable...    37   0.62 
tr|A8K0D8|A8K0D8_HUMAN cDNA FLJ75412, highly similar to Homo sap...    37   0.62 
tr|Q9FH52|Q9FH52_ARATH Genomic DNA, chromosome 5, TAC clone:K22G...    36   1.1  
tr|Q8VZG6|Q8VZG6_ARATH AT5g61910/k22g18_30 (Putative uncharacter...    36   1.1  
tr|Q3E873|Q3E873_ARATH Uncharacterized protein At5g61910.3 OS=Ar...    36   1.1  
tr|B0DL79|B0DL79_LACBS Predicted protein OS=Laccaria bicolor (st...    35   1.8  
tr|B0CUS5|B0CUS5_LACBS Predicted protein OS=Laccaria bicolor (st...    35   1.8  
tr|A7QT80|A7QT80_VITVI Chromosome chr1 scaffold_166, whole genom...    35   3.2  
tr|Q6AYW0|Q6AYW0_RAT Mak protein OS=Rattus norvegicus GN=Mak PE=...    34   4.1  
tr|A7AQB3|A7AQB3_BABBO Variant erythrocyte surface antigen-1, be...    34   4.1  
tr|B7XZR2|B7XZR2_RUMHA Putative uncharacterized protein OS=Blaut...    34   5.4  
tr|A7NYZ0|A7NYZ0_VITVI Chromosome chr6 scaffold_3, whole genome ...    34   5.4  
tr|A5CAT2|A5CAT2_VITVI Putative uncharacterized protein OS=Vitis...    34   5.4  
tr|A5ADC6|A5ADC6_VITVI Putative uncharacterized protein OS=Vitis...    34   5.4  
tr|Q7RUV4|Q7RUV4_NEUCR Putative uncharacterized protein OS=Neuro...    34   5.4  
tr|A3TJB8|A3TJB8_9MICO Putative uncharacterized protein OS=Janib...    33   9.2  
tr|A9S1G1|A9S1G1_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   9.2  
tr|B0W3X2|B0W3X2_CULQU Chymotrypsinogen OS=Culex quinquefasciatu...    33   9.2  

>tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 394

 Score = 40.4 bits (93), Expect = 0.057
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 466 ITLMCDSETKNDCFKYRVFGLP 531
           +  MC+S+TK DCF+YRVFGLP
Sbjct: 114 LIFMCNSKTKQDCFRYRVFGLP 135


>tr|B8LNW7|B8LNW7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 461

 Score = 39.7 bits (91), Expect = 0.098
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +1

Query: 457 YLDITLMCDSETKNDCFKYRVFGLP 531
           +  +  MC+S+TK +CF+YRVFGLP
Sbjct: 75  FAGLIFMCNSQTKQECFRYRVFGLP 99


>tr|A9NVJ6|A9NVJ6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 458

 Score = 39.7 bits (91), Expect = 0.098
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +1

Query: 457 YLDITLMCDSETKNDCFKYRVFGLP 531
           +  +  MC+S+TK +CF+YRVFGLP
Sbjct: 72  FAGLIFMCNSQTKQECFRYRVFGLP 96


>tr|A5BDJ5|A5BDJ5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011005 PE=4 SV=1
          Length = 468

 Score = 38.9 bits (89), Expect = 0.17
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +1

Query: 475 MCDSETKNDCFKYRVFGLP 531
           MC+ +TK DCFKYRVFGLP
Sbjct: 82  MCNGKTKPDCFKYRVFGLP 100


>tr|A7PU02|A7PU02_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023604001
           PE=4 SV=1
          Length = 106

 Score = 37.4 bits (85), Expect = 0.49
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +1

Query: 367 AQQTSANAKGKEKQDIFWRYSCSGGQHY*LYLDITLMCDSETKNDCFKYRVFGLP 531
           A + S N K K K D+    +  G         I  MC+S+TK DCF Y++ GLP
Sbjct: 8   ATKESENQKEKGKNDLRAEENIGG---------IIFMCNSKTKPDCFCYQIMGLP 53


>tr|Q5TF06|Q5TF06_HUMAN Novel transcript OS=Homo sapiens
           GN=RP3-365O12.1-001 PE=2 SV=1
          Length = 1346

 Score = 37.0 bits (84), Expect = 0.62
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 440 PPEQEYRQKMSCFSFPFALADVCWAYPYVQVSCHHTHGCNAACRSLWQP 294
           P  +E  +K  C+   F  + V W    V V CH T   NAA  S+W P
Sbjct: 610 PAAKEVNKKQVCYKHNFNASSVSWCSKTVDVCCHFT---NAANNSVWSP 655


>tr|B4DTV3|B4DTV3_HUMAN cDNA FLJ57199, highly similar to Probable
           G-protein coupled receptor 116 OS=Homo sapiens PE=2 SV=1
          Length = 901

 Score = 37.0 bits (84), Expect = 0.62
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 440 PPEQEYRQKMSCFSFPFALADVCWAYPYVQVSCHHTHGCNAACRSLWQP 294
           P  +E  +K  C+   F  + V W    V V CH T   NAA  S+W P
Sbjct: 165 PAAKEVNKKQVCYKHNFNASSVSWCSKTVDVCCHFT---NAANNSVWSP 210


>tr|B4DLD2|B4DLD2_HUMAN cDNA FLJ57030, highly similar to Probable
           G-protein coupled receptor 116 OS=Homo sapiens PE=2 SV=1
          Length = 770

 Score = 37.0 bits (84), Expect = 0.62
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 440 PPEQEYRQKMSCFSFPFALADVCWAYPYVQVSCHHTHGCNAACRSLWQP 294
           P  +E  +K  C+   F  + V W    V V CH T   NAA  S+W P
Sbjct: 39  PAAKEVNKKQVCYKHNFNASSVSWCSKTVDVCCHFT---NAANNSVWSP 84


>tr|A8K0D8|A8K0D8_HUMAN cDNA FLJ75412, highly similar to Homo
           sapiens G protein-coupled receptor 116 (GPR116), mRNA
           OS=Homo sapiens PE=2 SV=1
          Length = 1346

 Score = 37.0 bits (84), Expect = 0.62
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 440 PPEQEYRQKMSCFSFPFALADVCWAYPYVQVSCHHTHGCNAACRSLWQP 294
           P  +E  +K  C+   F  + V W    V V CH T   NAA  S+W P
Sbjct: 610 PAAKEVNKKQVCYKHNFNASSVSWCSKTVDVCCHFT---NAANNSVWSP 655


>tr|Q9FH52|Q9FH52_ARATH Genomic DNA, chromosome 5, TAC clone:K22G18
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 776

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 475 MCDSETKNDCFKYRVFGLP 531
           MC+  TK DC++YRVFG+P
Sbjct: 71  MCNGRTKTDCYRYRVFGIP 89