DK955363 |
Clone id |
TST39A01NGRL0022_O10 |
Library |
TST39 |
Length |
570 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_O10. 5' end sequence. |
Accession |
DK955363 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL708Contig1 |
Sequence |
CTTGTGCACCAGTAAAGTTCGTGGCTATGGCGGCAACTCTCTCGTCTTCTTCCATGTCTG TCTCAGTACCATCGAGGAGTTCATTCCTGGGAAGTAAAGATCAGTTTTGCTGCTCTCCTT CCATCTCCGTATCTTCCAGTAAGGTATCCGTCCCGGTCATCAGAGCCACATCACGAGTTG ACAAATTCTCAAAGTCTGACATTATCGTCTCCCCCTCTATCTTGTCTGCAAATTTTTCCA AATTGGGAGAGCAGGTCAAGGCAGTGGATGAAGCAGGATGTGACTGGATTCATGTAGATG TGATGGACGGTAGGTTTGTACCAAACATCACAATTGGACCACTGGTGGTAGATGCATTAA GGCCTGTCACTGACTTACCTCTTGATGTGCATCTGATGATTGTTGAGCCTGAACAAAGAG TGCCGGACTTTGTGAAAGCTGGTGCGGATATTGTTAGTGTGCATTGTGAACAGTCTTCCA CGATCCATTTGCATAGGACTTTAAATCAGATCAAGAGTTTGGGTGCTAAAAGCTGGAGTA GTGCTAAACCCCTGGTACCCCATTTGACTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ZTP5 |
Definition |
sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica |
Align length |
133 |
Score (bit) |
240.0 |
E-value |
4.0e-63 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955363|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_O10, 5' (570 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplasti... 240 4e-63 sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplasti... 237 3e-62 sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplasti... 235 1e-61 sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocys... 176 9e-44 sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus s... 147 5e-35 sp|P40117|RPEC_RALEH Ribulose-phosphate 3-epimerase, chromosomal... 118 2e-26 sp|Q04539|RPEP_RALEH Ribulose-phosphate 3-epimerase, plasmid OS=... 115 2e-25 sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera a... 111 2e-24 sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera a... 111 3e-24 sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacte... 110 4e-24 sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex ae... 109 1e-23 sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyc... 107 4e-23 sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase OS=Treponema ... 106 7e-23 sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia m... 105 1e-22 sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacter... 105 1e-22 sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacter... 105 1e-22 sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella f... 103 6e-22 sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilu... 103 6e-22 sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichi... 103 6e-22 sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichi... 103 6e-22 sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichi... 103 6e-22 sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase OS=Chlamydia ... 100 7e-21 sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase OS=Chlamydia ... 100 9e-21 sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase OS=Rhodospiri... 99 1e-20 sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase OS=Chlamydia ... 99 1e-20 sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacter... 97 4e-20 sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomy... 94 6e-19 sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimerase OS=Buchnera a... 93 1e-18 sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase OS=Helicobact... 91 5e-18 sp|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase OS=Helicobact... 90 9e-18
>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2 Length = 274
Score = 240 bits (612), Expect = 4e-63 Identities = 119/133 (89%), Positives = 125/133 (93%) Frame = +3
Query: 162 RATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGP 341 RA+SRVDKFSK+DIIVSPSILSANFSKLGEQVKAV+ AGCDWIHVDVMDGRFVPNITIGP Sbjct: 38 RASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGP 97
Query: 342 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSL 521 LVVDALRPVTDLPLDVHLMIVEPEQRVPDF+KAGADIVSVHCEQSSTIHLHRT+NQIKSL Sbjct: 98 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSL 157
Query: 522 GAKSWSSAKPLVP 560 GAK+ P P Sbjct: 158 GAKAGVVLNPATP 170
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1 Length = 280
Score = 237 bits (604), Expect = 3e-62 Identities = 115/132 (87%), Positives = 125/132 (94%) Frame = +3
Query: 165 ATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPL 344 A+SRVDKFSKSDIIVSPSILSANFSKLGEQVKA+++AGCDWIHVDVMDGRFVPNITIGPL Sbjct: 45 ASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPL 104
Query: 345 VVDALRPVTDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLG 524 VVD+LRP+TDLPLDVHLMIVEP+QRVPDF+KAGADIVSVHCEQSSTIHLHRT+NQIKSLG Sbjct: 105 VVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLG 164
Query: 525 AKSWSSAKPLVP 560 AK+ P P Sbjct: 165 AKAGVVLNPGTP 176
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1 Length = 285
Score = 235 bits (599), Expect = 1e-61 Identities = 117/133 (87%), Positives = 124/133 (93%) Frame = +3
Query: 162 RATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGP 341 +ATSRVDKFSKSDIIVSPSILSANF+KLGEQVKAV+ AGCDWIHVDVMDGRFVPNITIGP Sbjct: 49 KATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP 108
Query: 342 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSL 521 LVVDALRPVTDLPLDVHLMIVEPEQRVPDF+KAGADIVSVHCE +STIHLHRT+NQIKSL Sbjct: 109 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSL 168
Query: 522 GAKSWSSAKPLVP 560 GAK+ P P Sbjct: 169 GAKAGVVLNPGTP 181
>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3 Length = 230
Score = 176 bits (445), Expect = 9e-44 Identities = 84/121 (69%), Positives = 102/121 (84%) Frame = +3
Query: 198 DIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 377 +I+V+PSILSA+FS+LGE++KAVDEAG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T Sbjct: 4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 63
Query: 378 PLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKSWSSAKPLV 557 LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI+ LG K+ + P Sbjct: 64 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 123
Query: 558 P 560 P Sbjct: 124 P 124
>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1 Length = 217
Score = 147 bits (370), Expect = 5e-35 Identities = 73/120 (60%), Positives = 91/120 (75%) Frame = +3
Query: 201 IIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 380 I V+PSILSA+F+ LG ++K V++ G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLP Sbjct: 2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLP 61
Query: 381 LDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKSWSSAKPLVP 560 LDVHLMI EP++ +P F KAGADI+SVH E + HLHRT+ IK G K+ P P Sbjct: 62 LDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVLNPHTP 119
>sp|P40117|RPEC_RALEH Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1 Length = 241
Score = 118 bits (296), Expect = 2e-26 Identities = 58/124 (46%), Positives = 84/124 (67%) Frame = +3
Query: 189 SKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 368 S+ I ++PSILSA+F++LGE+V A++ G D +H DVMD +VPN+TIGPLV +A+RP+ Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPL 71
Query: 369 TDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKSWSSAK 548 +P+DVHLM+ + +P F KAGA+I+S H E S H+ RT+ I+ G K+ Sbjct: 72 VSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 549 PLVP 560 P P Sbjct: 130 PATP 133
>sp|Q04539|RPEP_RALEH Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1 Length = 241
Score = 115 bits (287), Expect = 2e-25 Identities = 56/124 (45%), Positives = 83/124 (66%) Frame = +3
Query: 189 SKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 368 S+ I ++PSILSA+F++LGE+V A++ G D +H DVMD +V N+TIGPLV +A+RP+ Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPL 71
Query: 369 TDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKSWSSAK 548 +P+DVHLM+ + +P F KAGA+++S H E S H+ RT+ I+ G K+ Sbjct: 72 VSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 549 PLVP 560 P P Sbjct: 130 PATP 133
>sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1 Length = 228
Score = 111 bits (278), Expect = 2e-24 Identities = 55/116 (47%), Positives = 78/116 (67%), Gaps = 1/116 (0%) Frame = +3
Query: 207 VSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPL 383 ++ SILSA+F++LGE K +AG DWIH DVMD +VPN+T+GP+++ ALR +P+ Sbjct: 6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPI 65
Query: 384 DVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKSWSSAKP 551 DVHLM+ + +P F +AGAD ++ H E ST H+ RTLN IK G K+ + P Sbjct: 66 DVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNP 119
>sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1 Length = 228
Score = 111 bits (277), Expect = 3e-24 Identities = 54/119 (45%), Positives = 81/119 (68%), Gaps = 1/119 (0%) Frame = +3
Query: 207 VSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPL 383 ++PSILSA+F++LGE +K V +AG D IH DVMD +VPN+++GP+++++LR P+ Sbjct: 6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITAPI 65
Query: 384 DVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKSWSSAKPLVP 560 DVHLM+ + +P F KAGA ++ H E +T+H+ RTLN IK G K+ + P P Sbjct: 66 DVHLMVKPVDNLIPQFAKAGATFITFHPE--ATLHIERTLNLIKENGCKAGLAFNPATP 122
>sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2 Length = 228
Score = 110 bits (276), Expect = 4e-24 Identities = 53/120 (44%), Positives = 76/120 (63%) Frame = +3
Query: 201 IIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 380 I ++PSILSA+F+ G +++A++ G DW+HVDVMDG FVPN+T GP V A R Sbjct: 7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTV 66
Query: 381 LDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKSWSSAKPLVP 560 +DVHLMI + + + +AGAD+++ H E H+HRTL I++ G KS + P P Sbjct: 67 MDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTP 124
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q10R77 |
Definition |
tr|Q10R77|Q10R77_ORYSJ Os03g0169100 protein OS=Oryza sativa subsp. japonica |
Align length |
133 |
Score (bit) |
240.0 |
E-value |
5.0e-62 |
Report |
 |