DK955366
Clone id TST39A01NGRL0022_O13
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_O13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCTACTGCAGTTGGAGAGGCTGTCGAGCAGGAGACTGAAATATTCCGAATAATGAGTAAG
AAGGGGAAGAAGCGGAAGCAAGGAGAGGTTGCTCCGAGTCCAGCTGATGTTGCTTTACAG
ATGAATGTTGAGAAGCTGATGAAGGAACAGAATGTTCACCGCCTAGACAAAACAGTGAGG
AGGGCAAAGGAATTCAAGCCTTGGGGGAGTCCTCTGCAGGTCAAGGTTGGATCAAGATTG
ATAGACATCTTGATGAATGTTGCTTTCATACATCCCCCAGTTAGCCAATCTCCAACAGAG
GATCTTCCAGAAATTCGGCCAGCTTTAAAGCATGAAAAAAGGACAATAACCGCCAAAAAG
AAGAGGTTCACTCGACAAATTGGAGTCCTTGCTTGTGATCCACTTGTGTGGTCTTCTCTA
GAGAAGTCGGCAAAGTTTTTGGAGTTGCCTTACATGCCTATGCTAGTGGAGCCTGTGAAG
TGGACATCGTATAAGAAGGGTGGTTATATGGTTCTGAGAAGCTAACTTGATGCCGACACA
CGGAGCACGGAGTCAACAAGTTACAT
■■Homology search results ■■ -
sp_hit_id Q8VWF8
Definition sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris
Align length 181
Score (bit) 148.0
E-value 2.0e-35
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955366|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_O13, 5'
(566 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplast... 148 2e-35
sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplas... 147 5e-35
sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondri... 136 8e-32
sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondr... 134 2e-31
sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondri... 131 3e-30
sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplast... 122 1e-27
sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplast... 121 2e-27
sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplast... 118 2e-26
sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplas... 118 2e-26
sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplas... 114 4e-25
sp|Q8BKF1|RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial ... 47 9e-05
sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial ... 43 0.001
sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial ... 42 0.002
sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial ... 36 0.12
sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial ... 35 0.20
sp|Q8CXK6|DNLJ_OCEIH DNA ligase OS=Oceanobacillus iheyensis GN=l... 32 2.2
sp|Q8XHL9|SYG_CLOPE Glycyl-tRNA synthetase OS=Clostridium perfri... 31 3.7
sp|Q8AXP2|CCD80_CHICK Coiled-coil domain-containing protein 80 O... 31 4.9

>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial OS=Nicotiana sylvestris
GN=RPOT2 PE=2 SV=2
Length = 1020

Score = 148 bits (374), Expect = 2e-35
Identities = 76/181 (41%), Positives = 110/181 (60%), Gaps = 7/181 (3%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSK-------KGKKRKQGEVAPSPADVALQMNVEKLMKEQNVH 159
A +G+A+EQE I + K K K+++ GE + L+ V LMK+Q +
Sbjct: 293 ALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQE-KLRKKVTNLMKKQKLR 351

Query: 160 RLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEK 339
+ + VRR + KPWG + KVGSRLID+L+ A+I PP +Q D P+IRPA H
Sbjct: 352 AVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAV-DPPDIRPAFVHSV 410

Query: 340 RTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLR 519
RT+ + K +R+ G++ CD LV+ LE++A+ + +PYMPMLV PVKWT Y KGG++ L
Sbjct: 411 RTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLP 470

Query: 520 S 522
S
Sbjct: 471 S 471


>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial OS=Nicotiana tabacum
GN=RPOT2-TOM PE=2 SV=2
Length = 1021

Score = 147 bits (370), Expect = 5e-35
Identities = 75/181 (41%), Positives = 110/181 (60%), Gaps = 7/181 (3%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSK-------KGKKRKQGEVAPSPADVALQMNVEKLMKEQNVH 159
A +G+A+EQE I + K K K+++ GE + L+ V LMK+Q +
Sbjct: 294 ALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQE-KLRKKVTNLMKKQKLR 352

Query: 160 RLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEK 339
+ + VRR + KPWG + KVGSRLI++L+ A+I PP +Q D P+IRPA H
Sbjct: 353 AVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAV-DPPDIRPAFLHSV 411

Query: 340 RTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLR 519
RT+ + K +R+ G++ CD LV+ LE++A+ + +PYMPMLV PVKWT Y KGG++ L
Sbjct: 412 RTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLP 471

Query: 520 S 522
S
Sbjct: 472 S 472


>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial
OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1
Length = 976

Score = 136 bits (342), Expect = 8e-32
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 11/185 (5%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVALQMNVEK-----------LMKE 147
AT +GEAVEQE I + KK KK + + A+ + V K LM++
Sbjct: 244 ATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEK 303

Query: 148 QNVHRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPAL 327
+ ++ VR+ FKPWG QVKVG+RLI +LM A+I PP Q + P+IRPA
Sbjct: 304 NKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFD-DGPPDIRPAF 362

Query: 328 KHEKRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGY 507
K RT+T + + +R+ G + CDPLV L+KSA+ + +PY+PML+ P WT Y +G +
Sbjct: 363 KQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAH 422

Query: 508 MVLRS 522
L S
Sbjct: 423 FFLPS 427


>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial
OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2
Length = 1002

Score = 134 bits (338), Expect = 2e-31
Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 6/180 (3%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRK-QGEVAPSPADVA-----LQMNVEKLMKEQNVHR 162
A+ +GEA+E E I R + K K G++ +P D+ L+ V+ LMK+Q + +
Sbjct: 277 ASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQ 336

Query: 163 LDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKR 342
+ K V++ + KPWG VKVG RLI ILM A+I PP Q + P+IRPA H +
Sbjct: 337 VRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLD-DGPPDIRPAFVHTLK 395

Query: 343 TITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522
T+ K +R+ GV+ CDPLV L+K+A+ + +PYMPMLV P W Y KGGY+ L S
Sbjct: 396 TVETMKG--SRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPS 453


>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial
OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1
Length = 1002

Score = 131 bits (329), Expect = 3e-30
Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 6/180 (3%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRK-QGEVAPSPADVA-----LQMNVEKLMKEQNVHR 162
A+ +GEA+E E I R + K K G++ +P D+ ++ V+ LMK+Q + +
Sbjct: 277 ASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQ 336

Query: 163 LDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKR 342
+ K V++ + KPWG VKVG RLI ILM A+I PP Q + P+IRPA H +
Sbjct: 337 VRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLD-DCPPDIRPAFVHTLK 395

Query: 343 TITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522
T+ K +R+ GV+ CDPLV L+K+A+ + +PYMPMLV P W Y KG Y+ L S
Sbjct: 396 TVETMKG--SRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPS 453


>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic
OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1
Length = 993

Score = 122 bits (306), Expect = 1e-27
Identities = 63/175 (36%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVALQMNVEKLMKEQNVHRLDKTVR 180
A ++G A+EQE I + + K L+ V L++ + + K V+
Sbjct: 272 AVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEELKEKQLLRKRVNSLIRRKRIIDALKVVK 331

Query: 181 RAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAKK 360
++ KPWG Q K+GSRL+++L+ A++ PP++QS + +PE RPA +H +T+T
Sbjct: 332 -SEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSG-DSIPEFRPAFRHRFKTVTKYP 389

Query: 361 -KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522
+ R+ GV+ CD L+ + L+KSAK + +PY+PMLV P +W Y KGGY+ L S
Sbjct: 390 GSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPS 444


>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=RPOT2 PE=2 SV=1
Length = 1011

Score = 121 bits (304), Expect = 2e-27
Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 6/180 (3%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA------LQMNVEKLMKEQNVHR 162
A VG+A+EQE I + KK K E + + L+ V +L+K+Q +
Sbjct: 285 ACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKKQKLSA 344

Query: 163 LDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKR 342
+ K ++ KPW + ++ KVGSRLI++L+ A+I P Q DLP++RPA H +
Sbjct: 345 VRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDN-DLPDVRPAFVHTFK 403

Query: 343 TITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522
+ R+ GV+ CDPLV LEKS ++ +PYMPMLV P+KW+ Y KG Y+ L S
Sbjct: 404 -VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTS 462


>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic
OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1
Length = 977

Score = 118 bits (295), Expect = 2e-26
Identities = 67/180 (37%), Positives = 102/180 (56%), Gaps = 6/180 (3%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRL 165
A +G AVE E I + K K +K A S D++ L+ V+ L+K V +
Sbjct: 252 AVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEV 311

Query: 166 DKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRT 345
K ++ ++E + WG Q K+G RL+++L A++ PPV QS + P+IRPA +H R
Sbjct: 312 RKLMK-SEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQS-ADTPPDIRPAFRHVFRI 369

Query: 346 ITAKK-KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522
T K ++ GV+ CDPLV + ++++ K + +PY+PMLV P KW Y KGGY+ L S
Sbjct: 370 ATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPS 429


>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic
OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1
Length = 977

Score = 118 bits (295), Expect = 2e-26
Identities = 67/180 (37%), Positives = 102/180 (56%), Gaps = 6/180 (3%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRL 165
A +G AVE E I + K K +K A S D++ L+ V+ L+K V +
Sbjct: 252 AVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEV 311

Query: 166 DKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRT 345
K ++ ++E + WG Q K+G RL+++L A++ PPV QS + P+IRPA +H R
Sbjct: 312 RKLMK-SEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQS-ADTPPDIRPAFRHVFRI 369

Query: 346 ITAKK-KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522
T K ++ GV+ CDPLV + ++++ K + +PY+PMLV P KW Y KGGY+ L S
Sbjct: 370 ATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPS 429


>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic
OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2
Length = 977

Score = 114 bits (284), Expect = 4e-25
Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 6/180 (3%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRL 165
A +G AVE E I + K K +K A S D++ L+ V+ L+K V +
Sbjct: 251 AVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEV 310

Query: 166 DKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRT 345
K ++ ++E + WG Q K+G RL+++L A++ PV QS + P+IRPA +H +
Sbjct: 311 RKLMK-SEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQS-ADTPPDIRPAFRHVFKI 368

Query: 346 ITAKK-KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522
T K ++ GV+ CDPLV + ++++ K + +PY+PMLV P KW Y KGGY+ L S
Sbjct: 369 ATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPS 428


tr_hit_id Q52GZ4
Definition tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia oleracea
Align length 184
Score (bit) 149.0
E-value 8.0e-35
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955366|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_O13, 5'
(566 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia o... 149 8e-35
tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 145 2e-33
tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 145 2e-33
tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 144 4e-33
tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment) OS... 141 2e-32
tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis vini... 141 2e-32
tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum a... 140 4e-32
tr|A7PAG7|A7PAG7_VITVI DNA-directed RNA polymerase OS=Vitis vini... 139 1e-31
tr|B4YPU8|B4YPU8_BRAOA Putative uncharacterized protein OS=Brass... 137 5e-31
tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodiu... 135 1e-30
tr|Q9SYW4|Q9SYW4_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 130 5e-29
tr|O82725|O82725_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 130 5e-29
tr|Q8SBD4|Q8SBD4_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 130 7e-29
tr|Q8L6F9|Q8L6F9_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 130 7e-29
tr|A9TL52|A9TL52_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 130 7e-29
tr|Q84LK5|Q84LK5_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 125 2e-27
tr|Q67UP6|Q67UP6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 125 2e-27
tr|Q0DAH8|Q0DAH8_ORYSJ DNA-directed RNA polymerase (Fragment) OS... 125 2e-27
tr|Q1KUU5|Q1KUU5_9ROSI Putative uncharacterized protein OS=Cleom... 124 4e-27
tr|Q70XR1|Q70XR1_HORVD DNA-directed RNA polymerase OS=Hordeum vu... 122 1e-26
tr|Q70XR0|Q70XR0_HORVD DNA-directed RNA polymerase OS=Hordeum vu... 122 1e-26
tr|Q3EBU8|Q3EBU8_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 122 1e-26
tr|Q0WWN0|Q0WWN0_ARATH DNA-directed RNA polymerase (Fragment) OS... 122 1e-26
tr|Q0WN04|Q0WN04_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 122 1e-26
tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 122 2e-26
tr|Q8L6F8|Q8L6F8_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 122 2e-26
tr|A9TJW1|A9TJW1_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 122 2e-26
tr|A7PFM9|A7PFM9_VITVI DNA-directed RNA polymerase OS=Vitis vini... 120 4e-26
tr|Q41524|Q41524_WHEAT DNA-directed RNA polymerase OS=Triticum a... 119 2e-25
tr|A3BE54|A3BE54_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 117 6e-25

>tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia
oleracea GN=rpoT2 PE=2 SV=1
Length = 1036

Score = 149 bits (377), Expect = 8e-35
Identities = 79/184 (42%), Positives = 112/184 (60%), Gaps = 10/184 (5%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA----------LQMNVEKLMKEQ 150
A A+GEA+EQE I + K K+K+G+ + P D A L+ NV L+K+Q
Sbjct: 307 ACALGEAIEQEVRIHTFLEKA--KKKKGDRSKKPDDAASDAEIQEQQHLRKNVNNLIKKQ 364

Query: 151 NVHRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALK 330
+ K V + KPWGS + KVGSRLI++L+ A+I PP SQS D P++RPA
Sbjct: 365 KRRQALKIVDSQGDLKPWGSETRAKVGSRLIELLIQTAYIQPPASQSAC-DPPDLRPAFV 423

Query: 331 HEKRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYM 510
H +++ + K+ R+ G++ CDPL+ LEK+ + + +PYMPMLV P KWT Y KG Y+
Sbjct: 424 HSLKSVGPENKKTGRRFGMIECDPLIIKGLEKTPRHIVIPYMPMLVPPEKWTGYDKGAYL 483

Query: 511 VLRS 522
VLRS
Sbjct: 484 VLRS 487


>tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
subsp. japonica GN=rpoT1 PE=2 SV=1
Length = 1017

Score = 145 bits (366), Expect = 2e-33
Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 8/182 (4%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSK---KGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNV 156
A +GEA+E E I + + K K K E +D+A L+ V LMK+Q +
Sbjct: 288 ACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKI 347

Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336
++ V++ KPWG KVGSRLI++++ A+I PP SQS + P+IRPA HE
Sbjct: 348 RQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS-ADGPPDIRPAFTHE 406

Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516
RT+ ++++ +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L
Sbjct: 407 MRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFL 466

Query: 517 RS 522
S
Sbjct: 467 PS 468


>tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
subsp. japonica GN=OSJNBa0069P02.30-1 PE=2 SV=1
Length = 951

Score = 145 bits (366), Expect = 2e-33
Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 8/182 (4%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSK---KGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNV 156
A +GEA+E E I + + K K K E +D+A L+ V LMK+Q +
Sbjct: 288 ACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKI 347

Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336
++ V++ KPWG KVGSRLI++++ A+I PP SQS + P+IRPA HE
Sbjct: 348 RQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS-ADGPPDIRPAFTHE 406

Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516
RT+ ++++ +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L
Sbjct: 407 MRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFL 466

Query: 517 RS 522
S
Sbjct: 467 PS 468


>tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays
GN=rpoT1 PE=2 SV=1
Length = 975

Score = 144 bits (362), Expect = 4e-33
Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 8/182 (4%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSK---KGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNV 156
A +GEA+E E I R + K K K + E ++A L+ V LMK+Q +
Sbjct: 246 ACQIGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTNIAVEQQRLRKKVTDLMKKQKL 305

Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336
++ V+ + +PWG KVGSRLID+ + A I PP SQS ++ LP+IRPA +HE
Sbjct: 306 RQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQS-SDGLPDIRPAFRHE 364

Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516
RT+ ++++ +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L
Sbjct: 365 MRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFL 424

Query: 517 RS 522
S
Sbjct: 425 PS 426


>tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment)
OS=Hordeum vulgare GN=rpoTm PE=2 SV=1
Length = 862

Score = 141 bits (356), Expect = 2e-32
Identities = 75/182 (41%), Positives = 108/182 (59%), Gaps = 8/182 (4%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGE---VAPSPADVA-----LQMNVEKLMKEQNV 156
A +GEAVE E I + + K KK + V P +D+A L+ V LMK+Q +
Sbjct: 135 ACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEPGDSDIAKEQQLLRKKVTDLMKKQKI 194

Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336
++ V++ +PWG KVGSRLI++ + A I PP SQS + PEIRPA HE
Sbjct: 195 RQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSG-DSTPEIRPAFTHE 253

Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516
RT+ ++K +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L
Sbjct: 254 MRTVAREQK--SRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFL 311

Query: 517 RS 522
S
Sbjct: 312 PS 313


>tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis
vinifera GN=GSVIVT00021161001 PE=3 SV=1
Length = 978

Score = 141 bits (356), Expect = 2e-32
Identities = 75/180 (41%), Positives = 105/180 (58%), Gaps = 6/180 (3%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQ------GEVAPSPADVALQMNVEKLMKEQNVHR 162
A +GEA+E E I R M K KK G + L+ V LMK+Q + +
Sbjct: 251 ACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQ 310

Query: 163 LDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKR 342
+ + V+R + KPWG VKVGSRLI++L+ A+I PP Q + P+IRPA H +
Sbjct: 311 VRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLG-DGPPDIRPAFVHTLK 369

Query: 343 TITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522
T+ + ++ TR+ GV+ CDPLV LEK+A+ + +PYMPMLV P+ WT Y KG Y+ L S
Sbjct: 370 TVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPS 429


>tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum
aestivum PE=2 SV=1
Length = 1005

Score = 140 bits (354), Expect = 4e-32
Identities = 76/182 (41%), Positives = 109/182 (59%), Gaps = 8/182 (4%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGE---VAPSPADVA-----LQMNVEKLMKEQNV 156
A +GEAVE E I + + K KK + V AD+A L+ V LMK+Q +
Sbjct: 277 ACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEAVDADIAKEQERLRKKVTDLMKKQKI 336

Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336
++ V++ +PWG KVGSRLI++ + A I PP SQS + PEIRPA HE
Sbjct: 337 RQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSG-DSTPEIRPAFTHE 395

Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516
RT+ A+++R +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L
Sbjct: 396 MRTV-AREQRKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFL 454

Query: 517 RS 522
S
Sbjct: 455 PS 456


>tr|A7PAG7|A7PAG7_VITVI DNA-directed RNA polymerase OS=Vitis
vinifera GN=GSVIVT00038106001 PE=3 SV=1
Length = 1035

Score = 139 bits (349), Expect = 1e-31
Identities = 72/182 (39%), Positives = 104/182 (57%), Gaps = 8/182 (4%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKR--KQGEVAPSPADVA------LQMNVEKLMKEQNV 156
A +G+A+EQE I + K +K+ K V D L+ V LMK+Q +
Sbjct: 305 ACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKL 364

Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336
H + V+ KPWG + KVGSRLI++LM A+I PPV + P+IRPA H
Sbjct: 365 HAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHT 424

Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516
+T+ + K+ R+ GV+ CDPLV LE++A+ + +PY+PMLV P+KWT Y KG ++ L
Sbjct: 425 FKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFL 484

Query: 517 RS 522
S
Sbjct: 485 PS 486


>tr|B4YPU8|B4YPU8_BRAOA Putative uncharacterized protein OS=Brassica
oleracea var. alboglabra GN=BoB028L01.020 PE=4 SV=1
Length = 951

Score = 137 bits (344), Expect = 5e-31
Identities = 72/185 (38%), Positives = 103/185 (55%), Gaps = 11/185 (5%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRK-----------QGEVAPSPADVALQMNVEKLMKE 147
AT +GEA+EQE I M K KK+ GEV + L+ + L+K+
Sbjct: 236 ATQIGEAIEQEARITSFMKKAKKKKNVVDDESEAVNASGEVETKET-LKLKKQINTLLKK 294

Query: 148 QNVHRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPAL 327
V ++ + V+ FK WG QVKVG+RLI +LM A+I PP Q + PEIRPA
Sbjct: 295 HKVRQVREIVKAHDSFKSWGQEAQVKVGARLIQLLMETAYIQPPAEQFD-DGPPEIRPAF 353

Query: 328 KHEKRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGY 507
K R +T + K+ +R+ G + CDPL+ L+KSA+ + +PY+PML+ P WT Y +G +
Sbjct: 354 KQSSRIVTIENKKLSRKYGCIECDPLIRKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAH 413

Query: 508 MVLRS 522
L S
Sbjct: 414 FFLPS 418


>tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodium
album PE=2 SV=1
Length = 988

Score = 135 bits (341), Expect = 1e-30
Identities = 74/178 (41%), Positives = 104/178 (58%), Gaps = 4/178 (2%)
Frame = +1

Query: 1 ATAVGEAVEQETEIFRIMSKKGKK---RKQGEVAPSPADVALQMNVEKLMKEQNVHRLDK 171
AT +GEAVEQE +I + + K KK E + A L V LMK+Q + ++ +
Sbjct: 262 ATQIGEAVEQEAKIRKFLEKSKKKPATNNNDEDDSAKAQQRLAKKVTTLMKKQKISQVRE 321

Query: 172 TVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTIT 351
VR + KPW QVKVG +LI +L A+I PP Q + P+IRPA H ++T+
Sbjct: 322 IVRGQDDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQL-ADGPPDIRPAFIHTQKTVC 380

Query: 352 AK-KKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522
+ +K R+ GV+ CDPLV LEK+A+ + +PYMPML+ P+ WT Y KG Y+ L S
Sbjct: 381 KESQKGLRRRYGVIECDPLVRRGLEKTARHMVIPYMPMLIPPLNWTGYDKGAYLYLPS 438