DK955366 |
Clone id |
TST39A01NGRL0022_O13 |
Library |
TST39 |
Length |
566 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_O13. 5' end sequence. |
Accession |
DK955366 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL550Contig2 |
Sequence |
GCTACTGCAGTTGGAGAGGCTGTCGAGCAGGAGACTGAAATATTCCGAATAATGAGTAAG AAGGGGAAGAAGCGGAAGCAAGGAGAGGTTGCTCCGAGTCCAGCTGATGTTGCTTTACAG ATGAATGTTGAGAAGCTGATGAAGGAACAGAATGTTCACCGCCTAGACAAAACAGTGAGG AGGGCAAAGGAATTCAAGCCTTGGGGGAGTCCTCTGCAGGTCAAGGTTGGATCAAGATTG ATAGACATCTTGATGAATGTTGCTTTCATACATCCCCCAGTTAGCCAATCTCCAACAGAG GATCTTCCAGAAATTCGGCCAGCTTTAAAGCATGAAAAAAGGACAATAACCGCCAAAAAG AAGAGGTTCACTCGACAAATTGGAGTCCTTGCTTGTGATCCACTTGTGTGGTCTTCTCTA GAGAAGTCGGCAAAGTTTTTGGAGTTGCCTTACATGCCTATGCTAGTGGAGCCTGTGAAG TGGACATCGTATAAGAAGGGTGGTTATATGGTTCTGAGAAGCTAACTTGATGCCGACACA CGGAGCACGGAGTCAACAAGTTACAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8VWF8 |
Definition |
sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris |
Align length |
181 |
Score (bit) |
148.0 |
E-value |
2.0e-35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955366|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_O13, 5' (566 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplast... 148 2e-35 sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplas... 147 5e-35 sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondri... 136 8e-32 sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondr... 134 2e-31 sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondri... 131 3e-30 sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplast... 122 1e-27 sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplast... 121 2e-27 sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplast... 118 2e-26 sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplas... 118 2e-26 sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplas... 114 4e-25 sp|Q8BKF1|RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial ... 47 9e-05 sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial ... 43 0.001 sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial ... 42 0.002 sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial ... 36 0.12 sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial ... 35 0.20 sp|Q8CXK6|DNLJ_OCEIH DNA ligase OS=Oceanobacillus iheyensis GN=l... 32 2.2 sp|Q8XHL9|SYG_CLOPE Glycyl-tRNA synthetase OS=Clostridium perfri... 31 3.7 sp|Q8AXP2|CCD80_CHICK Coiled-coil domain-containing protein 80 O... 31 4.9
>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2 Length = 1020
Score = 148 bits (374), Expect = 2e-35 Identities = 76/181 (41%), Positives = 110/181 (60%), Gaps = 7/181 (3%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSK-------KGKKRKQGEVAPSPADVALQMNVEKLMKEQNVH 159 A +G+A+EQE I + K K K+++ GE + L+ V LMK+Q + Sbjct: 293 ALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQE-KLRKKVTNLMKKQKLR 351
Query: 160 RLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEK 339 + + VRR + KPWG + KVGSRLID+L+ A+I PP +Q D P+IRPA H Sbjct: 352 AVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAV-DPPDIRPAFVHSV 410
Query: 340 RTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLR 519 RT+ + K +R+ G++ CD LV+ LE++A+ + +PYMPMLV PVKWT Y KGG++ L Sbjct: 411 RTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLP 470
Query: 520 S 522 S Sbjct: 471 S 471
>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2 Length = 1021
Score = 147 bits (370), Expect = 5e-35 Identities = 75/181 (41%), Positives = 110/181 (60%), Gaps = 7/181 (3%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSK-------KGKKRKQGEVAPSPADVALQMNVEKLMKEQNVH 159 A +G+A+EQE I + K K K+++ GE + L+ V LMK+Q + Sbjct: 294 ALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQE-KLRKKVTNLMKKQKLR 352
Query: 160 RLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEK 339 + + VRR + KPWG + KVGSRLI++L+ A+I PP +Q D P+IRPA H Sbjct: 353 AVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAV-DPPDIRPAFLHSV 411
Query: 340 RTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLR 519 RT+ + K +R+ G++ CD LV+ LE++A+ + +PYMPMLV PVKWT Y KGG++ L Sbjct: 412 RTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLP 471
Query: 520 S 522 S Sbjct: 472 S 472
>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1 Length = 976
Score = 136 bits (342), Expect = 8e-32 Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 11/185 (5%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVALQMNVEK-----------LMKE 147 AT +GEAVEQE I + KK KK + + A+ + V K LM++ Sbjct: 244 ATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEK 303
Query: 148 QNVHRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPAL 327 + ++ VR+ FKPWG QVKVG+RLI +LM A+I PP Q + P+IRPA Sbjct: 304 NKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFD-DGPPDIRPAF 362
Query: 328 KHEKRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGY 507 K RT+T + + +R+ G + CDPLV L+KSA+ + +PY+PML+ P WT Y +G + Sbjct: 363 KQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAH 422
Query: 508 MVLRS 522 L S Sbjct: 423 FFLPS 427
>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2 Length = 1002
Score = 134 bits (338), Expect = 2e-31 Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 6/180 (3%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRK-QGEVAPSPADVA-----LQMNVEKLMKEQNVHR 162 A+ +GEA+E E I R + K K G++ +P D+ L+ V+ LMK+Q + + Sbjct: 277 ASYIGEAIEHEARIHRFLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQ 336
Query: 163 LDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKR 342 + K V++ + KPWG VKVG RLI ILM A+I PP Q + P+IRPA H + Sbjct: 337 VRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLD-DGPPDIRPAFVHTLK 395
Query: 343 TITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522 T+ K +R+ GV+ CDPLV L+K+A+ + +PYMPMLV P W Y KGGY+ L S Sbjct: 396 TVETMKG--SRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPS 453
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1 Length = 1002
Score = 131 bits (329), Expect = 3e-30 Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 6/180 (3%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRK-QGEVAPSPADVA-----LQMNVEKLMKEQNVHR 162 A+ +GEA+E E I R + K K G++ +P D+ ++ V+ LMK+Q + + Sbjct: 277 ASHIGEAIEHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQ 336
Query: 163 LDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKR 342 + K V++ + KPWG VKVG RLI ILM A+I PP Q + P+IRPA H + Sbjct: 337 VRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLD-DCPPDIRPAFVHTLK 395
Query: 343 TITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522 T+ K +R+ GV+ CDPLV L+K+A+ + +PYMPMLV P W Y KG Y+ L S Sbjct: 396 TVETMKG--SRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPS 453
>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1 Length = 993
Score = 122 bits (306), Expect = 1e-27 Identities = 63/175 (36%), Positives = 101/175 (57%), Gaps = 1/175 (0%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVALQMNVEKLMKEQNVHRLDKTVR 180 A ++G A+EQE I + + K L+ V L++ + + K V+ Sbjct: 272 AVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEELKEKQLLRKRVNSLIRRKRIIDALKVVK 331
Query: 181 RAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAKK 360 ++ KPWG Q K+GSRL+++L+ A++ PP++QS + +PE RPA +H +T+T Sbjct: 332 -SEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSG-DSIPEFRPAFRHRFKTVTKYP 389
Query: 361 -KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522 + R+ GV+ CD L+ + L+KSAK + +PY+PMLV P +W Y KGGY+ L S Sbjct: 390 GSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPS 444
>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=2 SV=1 Length = 1011
Score = 121 bits (304), Expect = 2e-27 Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 6/180 (3%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA------LQMNVEKLMKEQNVHR 162 A VG+A+EQE I + KK K E + + L+ V +L+K+Q + Sbjct: 285 ACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKKQKLSA 344
Query: 163 LDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKR 342 + K ++ KPW + ++ KVGSRLI++L+ A+I P Q DLP++RPA H + Sbjct: 345 VRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDN-DLPDVRPAFVHTFK 403
Query: 343 TITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522 + R+ GV+ CDPLV LEKS ++ +PYMPMLV P+KW+ Y KG Y+ L S Sbjct: 404 -VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTS 462
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1 Length = 977
Score = 118 bits (295), Expect = 2e-26 Identities = 67/180 (37%), Positives = 102/180 (56%), Gaps = 6/180 (3%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRL 165 A +G AVE E I + K K +K A S D++ L+ V+ L+K V + Sbjct: 252 AVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEV 311
Query: 166 DKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRT 345 K ++ ++E + WG Q K+G RL+++L A++ PPV QS + P+IRPA +H R Sbjct: 312 RKLMK-SEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQS-ADTPPDIRPAFRHVFRI 369
Query: 346 ITAKK-KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522 T K ++ GV+ CDPLV + ++++ K + +PY+PMLV P KW Y KGGY+ L S Sbjct: 370 ATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPS 429
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1 Length = 977
Score = 118 bits (295), Expect = 2e-26 Identities = 67/180 (37%), Positives = 102/180 (56%), Gaps = 6/180 (3%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRL 165 A +G AVE E I + K K +K A S D++ L+ V+ L+K V + Sbjct: 252 AVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEV 311
Query: 166 DKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRT 345 K ++ ++E + WG Q K+G RL+++L A++ PPV QS + P+IRPA +H R Sbjct: 312 RKLMK-SEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQS-ADTPPDIRPAFRHVFRI 369
Query: 346 ITAKK-KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522 T K ++ GV+ CDPLV + ++++ K + +PY+PMLV P KW Y KGGY+ L S Sbjct: 370 ATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPS 429
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2 Length = 977
Score = 114 bits (284), Expect = 4e-25 Identities = 65/180 (36%), Positives = 101/180 (56%), Gaps = 6/180 (3%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRL 165 A +G AVE E I + K K +K A S D++ L+ V+ L+K V + Sbjct: 251 AVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEV 310
Query: 166 DKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRT 345 K ++ ++E + WG Q K+G RL+++L A++ PV QS + P+IRPA +H + Sbjct: 311 RKLMK-SEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQS-ADTPPDIRPAFRHVFKI 368
Query: 346 ITAKK-KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522 T K ++ GV+ CDPLV + ++++ K + +PY+PMLV P KW Y KGGY+ L S Sbjct: 369 ATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPS 428
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q52GZ4 |
Definition |
tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia oleracea |
Align length |
184 |
Score (bit) |
149.0 |
E-value |
8.0e-35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955366|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_O13, 5' (566 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia o... 149 8e-35 tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 145 2e-33 tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 145 2e-33 tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 144 4e-33 tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment) OS... 141 2e-32 tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis vini... 141 2e-32 tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum a... 140 4e-32 tr|A7PAG7|A7PAG7_VITVI DNA-directed RNA polymerase OS=Vitis vini... 139 1e-31 tr|B4YPU8|B4YPU8_BRAOA Putative uncharacterized protein OS=Brass... 137 5e-31 tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodiu... 135 1e-30 tr|Q9SYW4|Q9SYW4_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 130 5e-29 tr|O82725|O82725_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 130 5e-29 tr|Q8SBD4|Q8SBD4_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 130 7e-29 tr|Q8L6F9|Q8L6F9_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 130 7e-29 tr|A9TL52|A9TL52_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 130 7e-29 tr|Q84LK5|Q84LK5_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 125 2e-27 tr|Q67UP6|Q67UP6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 125 2e-27 tr|Q0DAH8|Q0DAH8_ORYSJ DNA-directed RNA polymerase (Fragment) OS... 125 2e-27 tr|Q1KUU5|Q1KUU5_9ROSI Putative uncharacterized protein OS=Cleom... 124 4e-27 tr|Q70XR1|Q70XR1_HORVD DNA-directed RNA polymerase OS=Hordeum vu... 122 1e-26 tr|Q70XR0|Q70XR0_HORVD DNA-directed RNA polymerase OS=Hordeum vu... 122 1e-26 tr|Q3EBU8|Q3EBU8_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 122 1e-26 tr|Q0WWN0|Q0WWN0_ARATH DNA-directed RNA polymerase (Fragment) OS... 122 1e-26 tr|Q0WN04|Q0WN04_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 122 1e-26 tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 122 2e-26 tr|Q8L6F8|Q8L6F8_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 122 2e-26 tr|A9TJW1|A9TJW1_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 122 2e-26 tr|A7PFM9|A7PFM9_VITVI DNA-directed RNA polymerase OS=Vitis vini... 120 4e-26 tr|Q41524|Q41524_WHEAT DNA-directed RNA polymerase OS=Triticum a... 119 2e-25 tr|A3BE54|A3BE54_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 117 6e-25
>tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia oleracea GN=rpoT2 PE=2 SV=1 Length = 1036
Score = 149 bits (377), Expect = 8e-35 Identities = 79/184 (42%), Positives = 112/184 (60%), Gaps = 10/184 (5%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA----------LQMNVEKLMKEQ 150 A A+GEA+EQE I + K K+K+G+ + P D A L+ NV L+K+Q Sbjct: 307 ACALGEAIEQEVRIHTFLEKA--KKKKGDRSKKPDDAASDAEIQEQQHLRKNVNNLIKKQ 364
Query: 151 NVHRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALK 330 + K V + KPWGS + KVGSRLI++L+ A+I PP SQS D P++RPA Sbjct: 365 KRRQALKIVDSQGDLKPWGSETRAKVGSRLIELLIQTAYIQPPASQSAC-DPPDLRPAFV 423
Query: 331 HEKRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYM 510 H +++ + K+ R+ G++ CDPL+ LEK+ + + +PYMPMLV P KWT Y KG Y+ Sbjct: 424 HSLKSVGPENKKTGRRFGMIECDPLIIKGLEKTPRHIVIPYMPMLVPPEKWTGYDKGAYL 483
Query: 511 VLRS 522 VLRS Sbjct: 484 VLRS 487
>tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp. japonica GN=rpoT1 PE=2 SV=1 Length = 1017
Score = 145 bits (366), Expect = 2e-33 Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 8/182 (4%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSK---KGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNV 156 A +GEA+E E I + + K K K E +D+A L+ V LMK+Q + Sbjct: 288 ACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKI 347
Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336 ++ V++ KPWG KVGSRLI++++ A+I PP SQS + P+IRPA HE Sbjct: 348 RQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS-ADGPPDIRPAFTHE 406
Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516 RT+ ++++ +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L Sbjct: 407 MRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFL 466
Query: 517 RS 522 S Sbjct: 467 PS 468
>tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp. japonica GN=OSJNBa0069P02.30-1 PE=2 SV=1 Length = 951
Score = 145 bits (366), Expect = 2e-33 Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 8/182 (4%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSK---KGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNV 156 A +GEA+E E I + + K K K E +D+A L+ V LMK+Q + Sbjct: 288 ACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKI 347
Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336 ++ V++ KPWG KVGSRLI++++ A+I PP SQS + P+IRPA HE Sbjct: 348 RQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS-ADGPPDIRPAFTHE 406
Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516 RT+ ++++ +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L Sbjct: 407 MRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFL 466
Query: 517 RS 522 S Sbjct: 467 PS 468
>tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays GN=rpoT1 PE=2 SV=1 Length = 975
Score = 144 bits (362), Expect = 4e-33 Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 8/182 (4%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSK---KGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNV 156 A +GEA+E E I R + K K K + E ++A L+ V LMK+Q + Sbjct: 246 ACQIGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTNIAVEQQRLRKKVTDLMKKQKL 305
Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336 ++ V+ + +PWG KVGSRLID+ + A I PP SQS ++ LP+IRPA +HE Sbjct: 306 RQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQS-SDGLPDIRPAFRHE 364
Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516 RT+ ++++ +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L Sbjct: 365 MRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFL 424
Query: 517 RS 522 S Sbjct: 425 PS 426
>tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment) OS=Hordeum vulgare GN=rpoTm PE=2 SV=1 Length = 862
Score = 141 bits (356), Expect = 2e-32 Identities = 75/182 (41%), Positives = 108/182 (59%), Gaps = 8/182 (4%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGE---VAPSPADVA-----LQMNVEKLMKEQNV 156 A +GEAVE E I + + K KK + V P +D+A L+ V LMK+Q + Sbjct: 135 ACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEPGDSDIAKEQQLLRKKVTDLMKKQKI 194
Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336 ++ V++ +PWG KVGSRLI++ + A I PP SQS + PEIRPA HE Sbjct: 195 RQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSG-DSTPEIRPAFTHE 253
Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516 RT+ ++K +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L Sbjct: 254 MRTVAREQK--SRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFL 311
Query: 517 RS 522 S Sbjct: 312 PS 313
>tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis vinifera GN=GSVIVT00021161001 PE=3 SV=1 Length = 978
Score = 141 bits (356), Expect = 2e-32 Identities = 75/180 (41%), Positives = 105/180 (58%), Gaps = 6/180 (3%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQ------GEVAPSPADVALQMNVEKLMKEQNVHR 162 A +GEA+E E I R M K KK G + L+ V LMK+Q + + Sbjct: 251 ACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQ 310
Query: 163 LDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKR 342 + + V+R + KPWG VKVGSRLI++L+ A+I PP Q + P+IRPA H + Sbjct: 311 VRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLG-DGPPDIRPAFVHTLK 369
Query: 343 TITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522 T+ + ++ TR+ GV+ CDPLV LEK+A+ + +PYMPMLV P+ WT Y KG Y+ L S Sbjct: 370 TVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPS 429
>tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum aestivum PE=2 SV=1 Length = 1005
Score = 140 bits (354), Expect = 4e-32 Identities = 76/182 (41%), Positives = 109/182 (59%), Gaps = 8/182 (4%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRKQGE---VAPSPADVA-----LQMNVEKLMKEQNV 156 A +GEAVE E I + + K KK + V AD+A L+ V LMK+Q + Sbjct: 277 ACQIGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEAVDADIAKEQERLRKKVTDLMKKQKI 336
Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336 ++ V++ +PWG KVGSRLI++ + A I PP SQS + PEIRPA HE Sbjct: 337 RQVRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSG-DSTPEIRPAFTHE 395
Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516 RT+ A+++R +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L Sbjct: 396 MRTV-AREQRKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFL 454
Query: 517 RS 522 S Sbjct: 455 PS 456
>tr|A7PAG7|A7PAG7_VITVI DNA-directed RNA polymerase OS=Vitis vinifera GN=GSVIVT00038106001 PE=3 SV=1 Length = 1035
Score = 139 bits (349), Expect = 1e-31 Identities = 72/182 (39%), Positives = 104/182 (57%), Gaps = 8/182 (4%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKR--KQGEVAPSPADVA------LQMNVEKLMKEQNV 156 A +G+A+EQE I + K +K+ K V D L+ V LMK+Q + Sbjct: 305 ACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKL 364
Query: 157 HRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHE 336 H + V+ KPWG + KVGSRLI++LM A+I PPV + P+IRPA H Sbjct: 365 HAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHT 424
Query: 337 KRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVL 516 +T+ + K+ R+ GV+ CDPLV LE++A+ + +PY+PMLV P+KWT Y KG ++ L Sbjct: 425 FKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFL 484
Query: 517 RS 522 S Sbjct: 485 PS 486
>tr|B4YPU8|B4YPU8_BRAOA Putative uncharacterized protein OS=Brassica oleracea var. alboglabra GN=BoB028L01.020 PE=4 SV=1 Length = 951
Score = 137 bits (344), Expect = 5e-31 Identities = 72/185 (38%), Positives = 103/185 (55%), Gaps = 11/185 (5%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKKRK-----------QGEVAPSPADVALQMNVEKLMKE 147 AT +GEA+EQE I M K KK+ GEV + L+ + L+K+ Sbjct: 236 ATQIGEAIEQEARITSFMKKAKKKKNVVDDESEAVNASGEVETKET-LKLKKQINTLLKK 294
Query: 148 QNVHRLDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPAL 327 V ++ + V+ FK WG QVKVG+RLI +LM A+I PP Q + PEIRPA Sbjct: 295 HKVRQVREIVKAHDSFKSWGQEAQVKVGARLIQLLMETAYIQPPAEQFD-DGPPEIRPAF 353
Query: 328 KHEKRTITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGY 507 K R +T + K+ +R+ G + CDPL+ L+KSA+ + +PY+PML+ P WT Y +G + Sbjct: 354 KQSSRIVTIENKKLSRKYGCIECDPLIRKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAH 413
Query: 508 MVLRS 522 L S Sbjct: 414 FFLPS 418
>tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodium album PE=2 SV=1 Length = 988
Score = 135 bits (341), Expect = 1e-30 Identities = 74/178 (41%), Positives = 104/178 (58%), Gaps = 4/178 (2%) Frame = +1
Query: 1 ATAVGEAVEQETEIFRIMSKKGKK---RKQGEVAPSPADVALQMNVEKLMKEQNVHRLDK 171 AT +GEAVEQE +I + + K KK E + A L V LMK+Q + ++ + Sbjct: 262 ATQIGEAVEQEAKIRKFLEKSKKKPATNNNDEDDSAKAQQRLAKKVTTLMKKQKISQVRE 321
Query: 172 TVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTIT 351 VR + KPW QVKVG +LI +L A+I PP Q + P+IRPA H ++T+ Sbjct: 322 IVRGQDDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQL-ADGPPDIRPAFIHTQKTVC 380
Query: 352 AK-KKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 522 + +K R+ GV+ CDPLV LEK+A+ + +PYMPML+ P+ WT Y KG Y+ L S Sbjct: 381 KESQKGLRRRYGVIECDPLVRRGLEKTARHMVIPYMPMLIPPLNWTGYDKGAYLYLPS 438
|