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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955367
Clone id TST39A01NGRL0022_O14
Library
Length 605
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_O14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAGAGAGTCTCTCAAAGAGCTCTTCCTTCTCAAGCAAGGAGGTCCATAAATACCCATTCC
CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTACAGAACATACTTTCCTTACAATTGAA
CCTTTCCTCGGCCAGTCTGTCGCTGCCTTCCCTCCTGCGTAAGCTTCCCACCGGTCCTTC
ACCGCAGAAATTACCTCTGTGGAAAGCCATGGTGGTGAACATGATGAAATGGAGACCATG
GCTTACAACGCCTACCAGGTGCTTCCAAGTGAAGCTCAAGCTTCATTGCCTTGAAGGTCT
CTCGGCCCTCTTGGCTGCAAAGAGCGGTGATTTAGGCACAGTATCCTCACCAAGCAAAAG
TAGCGGAGAGCTCAACACAATGATGGTGAATGTGAAGTGGAAGGGTCCTCGACGTGCTCT
GGGTTCTCGGTTTAAAAGAAGTCTTAAGAGAGCAAAGACAACTGCAAGGTTTCTAGAAGA
CAGCCCTCTTGTCACTTGGAATGAAGAGTTTGAGCACACTTGCATCCTCACTCTCACCAA
GGATGGCCAGTTCTTACCTTGGGACATATGCTTTTGTGGGTTAATCAGGTGAACACAAAA
TCAAA
■■Homology search results ■■ -
sp_hit_id A1UTE7
Definition sp|A1UTE7|UBIC_BARBK Probable chorismate--pyruvate lyase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583)
Align length 105
Score (bit) 32.0
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955367|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_O14, 5'
         (605 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1UTE7|UBIC_BARBK Probable chorismate--pyruvate lyase OS=Bart...    32   2.5  
sp|Q9JIG4|PPR3F_MOUSE Protein phosphatase 1 regulatory subunit 3...    31   4.3  
sp|Q38J85|IL2RB_MACFA Interleukin-2 receptor subunit beta OS=Mac...    31   4.3  

>sp|A1UTE7|UBIC_BARBK Probable chorismate--pyruvate lyase
           OS=Bartonella bacilliformis (strain ATCC 35685 / KC583)
           GN=ubiC PE=3 SV=1
          Length = 171

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 34/105 (32%), Positives = 44/105 (41%)
 Frame = +2

Query: 182 PQKLPLWKAMVVNMMKWRPWLTTPTRCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKS 361
           P+    W   VV M   +PWL   T   Q  L  H     +AL+   +  LG       S
Sbjct: 70  PESSLYWLREVVLMGDNQPWLLGRTVIPQETLAHHS----NALMNLGTLPLGRYLF---S 122

Query: 362 SGELNTMMVNVKWKGPRRALGSRFKRSLKRAKTTARFLEDSPLVT 496
           +GEL    +++  K    A  SR + S K    T  FL DSPL T
Sbjct: 123 NGELTRDYIHIGRKDSLWARRSRLRLSGKPLLLTELFLADSPLYT 167


>sp|Q9JIG4|PPR3F_MOUSE Protein phosphatase 1 regulatory subunit 3F
           OS=Mus musculus GN=Ppp1r3f PE=2 SV=2
          Length = 735

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +2

Query: 290 LEGLSALLAAKSGDLGTVSSPSKSSGELNTMMVNVKWKGPRRALGS 427
           L  LS L A  +   G  +SP+ + G L    + +KW GP RAL S
Sbjct: 436 LSHLSRLRAVAAAGGGEGTSPTHALGILTDRDLILKWPGPERALNS 481


>sp|Q38J85|IL2RB_MACFA Interleukin-2 receptor subunit beta OS=Macaca
           fascicularis GN=IL2RB PE=2 SV=1
          Length = 551

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
 Frame = +2

Query: 269 VKLKLHCLEGLSALLAAKSG-----DLGTVSSPSKSSGELNTMMVNVKWKGPRRALGSRF 433
           V L++ C EG+   + A        +L  ++  S     + T   N+ WK  + +    F
Sbjct: 104 VTLRVMCREGVRWRMMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWKISQAS--HYF 161

Query: 434 KRSLK---RAKTTARFLEDSPLVTWNEEFEHTCILTLTKDGQF 553
           +R L+   R  +     E++PL+T  ++ E  C+ TLT D Q+
Sbjct: 162 ERHLEFEARTLSPGHTWEEAPLMTLKQKQEWICLETLTPDTQY 204
tr_hit_id A9T1E1
Definition tr|A9T1E1|A9T1E1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 120
Score (bit) 87.0
E-value 8.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955367|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_O14, 5'
         (605 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T1E1|A9T1E1_PHYPA Predicted protein OS=Physcomitrella paten...    87   8e-16
tr|Q9SF22|Q9SF22_ARATH F26K24.5 protein OS=Arabidopsis thaliana ...    82   2e-14
tr|Q0WKW4|Q0WKW4_ARATH Putative uncharacterized protein At3g1176...    82   2e-14
tr|A7Q079|A7Q079_VITVI Chromosome chr8 scaffold_41, whole genome...    75   3e-12
tr|Q9FMC4|Q9FMC4_ARATH Genomic DNA, chromosome 5, P1 clone:MUK11...    63   2e-08
tr|Q2QM21|Q2QM21_ORYSJ Os12g0620600 protein OS=Oryza sativa subs...    52   3e-05
tr|A2ZMV2|A2ZMV2_ORYSI Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|Q10G00|Q10G00_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    40   0.11 
tr|Q9SKK3|Q9SKK3_ARATH Expressed protein OS=Arabidopsis thaliana...    38   0.52 
tr|Q8W4Q2|Q8W4Q2_ARATH SYNC1 protein OS=Arabidopsis thaliana GN=...    38   0.52 
tr|B8AVW7|B8AVW7_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.5  
tr|Q60DI5|Q60DI5_ORYSJ Os03g0649000 protein OS=Oryza sativa subs...    35   4.4  
tr|A5C4E3|A5C4E3_VITVI Putative uncharacterized protein OS=Vitis...    35   4.4  
tr|B2WGP3|B2WGP3_PYRTR Fatty acid synthase subunit alpha reducta...    34   7.6  

>tr|A9T1E1|A9T1E1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_138790 PE=4 SV=1
          Length = 706

 Score = 87.0 bits (214), Expect = 8e-16
 Identities = 51/120 (42%), Positives = 70/120 (58%)
 Frame = +2

Query: 209 MVVNMMKWRPWLTTPTRCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKSSGELNTMMV 388
           MV+  MKW P     ++ +QV L L+ LEGLS                  +  E   + V
Sbjct: 1   MVIKAMKW-PLRQHFSKKYQVNLVLNKLEGLSP-----------------NDSEEAKLYV 42

Query: 389 NVKWKGPRRALGSRFKRSLKRAKTTARFLEDSPLVTWNEEFEHTCILTLTKDGQFLPWDI 568
           ++KWKGP+ ALGSRF RS+KR KT A  +E+S  V+W+++FEH C+LT  KDG F PW +
Sbjct: 43  DLKWKGPKSALGSRF-RSMKREKTNALPVENSGSVSWDKKFEHVCVLTNDKDGVFQPWHV 101


>tr|Q9SF22|Q9SF22_ARATH F26K24.5 protein OS=Arabidopsis thaliana
           GN=At3g11760 PE=4 SV=1
          Length = 702

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 51/123 (41%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
 Frame = +2

Query: 209 MVVNMMKWRPWLTTPTRCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKSSGELNTMMV 388
           MVV MMKWRPW    TR ++VKL +  LEG          DL     P K     + + V
Sbjct: 1   MVVKMMKWRPWPPLVTRKYEVKLSVKKLEG---------WDLVREGVPEK-----DRLTV 46

Query: 389 NVKWKGPRRALGSRFKRSLKRAKTTARFLEDSPLVTW-NEEFEHTCILTLTKDGQFLPWD 565
            ++WKGP+  LGS  +RS+KR   T   + +S +V+W +EEF+  C LT  KD  F PW+
Sbjct: 47  EIRWKGPKATLGS-LRRSVKR-NFTKEAVGESDVVSWEDEEFQSLCSLTSYKDSLFYPWE 104

Query: 566 ICF 574
           I F
Sbjct: 105 ITF 107


>tr|Q0WKW4|Q0WKW4_ARATH Putative uncharacterized protein At3g11760
           OS=Arabidopsis thaliana GN=At3g11760 PE=2 SV=1
          Length = 394

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 51/123 (41%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
 Frame = +2

Query: 209 MVVNMMKWRPWLTTPTRCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKSSGELNTMMV 388
           MVV MMKWRPW    TR ++VKL +  LEG          DL     P K     + + V
Sbjct: 1   MVVKMMKWRPWPPLVTRKYEVKLSVKKLEG---------WDLVREGVPEK-----DRLTV 46

Query: 389 NVKWKGPRRALGSRFKRSLKRAKTTARFLEDSPLVTW-NEEFEHTCILTLTKDGQFLPWD 565
            ++WKGP+  LGS  +RS+KR   T   + +S +V+W +EEF+  C LT  KD  F PW+
Sbjct: 47  EIRWKGPKATLGS-LRRSVKR-NFTKEAVGESDVVSWEDEEFQSLCSLTSYKDSLFYPWE 104

Query: 566 ICF 574
           I F
Sbjct: 105 ITF 107


>tr|A7Q079|A7Q079_VITVI Chromosome chr8 scaffold_41, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027182001
           PE=4 SV=1
          Length = 715

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 43/122 (35%), Positives = 65/122 (53%)
 Frame = +2

Query: 209 MVVNMMKWRPWLTTPTRCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKSSGELNTMMV 388
           MVV MM+WRPW     R ++VKL +  +EG        +G+ G          E   ++V
Sbjct: 1   MVVKMMRWRPWPPLIPRKYEVKLVVRRMEGWGC-----AGEEGA---------EGRRVVV 46

Query: 389 NVKWKGPRRALGSRFKRSLKRAKTTARFLEDSPLVTWNEEFEHTCILTLTKDGQFLPWDI 568
            ++WKGP+ +L S  +R++KR  T    +    +V W+EEF+  C L+  KD  F PW+I
Sbjct: 47  EIRWKGPKISLSS-LRRTVKRNFTKEEDVGQDGVVLWDEEFQSVCNLSAYKDNVFHPWEI 105

Query: 569 CF 574
            F
Sbjct: 106 AF 107


>tr|Q9FMC4|Q9FMC4_ARATH Genomic DNA, chromosome 5, P1 clone:MUK11
           OS=Arabidopsis thaliana GN=At5g04860 PE=4 SV=1
          Length = 782

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
 Frame = +2

Query: 209 MVVNM---MKWRPWLTTPTRCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKSSGELNT 379
           MVV M   M+W PW       F V + +H ++GL  L +   GD  T    S+  G   T
Sbjct: 1   MVVKMKQIMRWPPWPPLFAVKFDVIVVVHQMDGL--LDSDGGGDDST--DQSQRGGGTTT 56

Query: 380 M---MVNVKWKGPRRALGSRFKRSLKRAKTTARFLEDSPLVTWNEEFEHTCILTLTKDGQ 550
               +V +KWKGP+       KRS+ R  T         +V WNEEF+  C  ++ K+G 
Sbjct: 57  RKRPVVEIKWKGPKSVT---LKRSVVRNLTEEGGFRGDGVVEWNEEFKRVCEFSVYKEGS 113

Query: 551 FLPW 562
           FLPW
Sbjct: 114 FLPW 117


>tr|Q2QM21|Q2QM21_ORYSJ Os12g0620600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0620600 PE=2 SV=1
          Length = 753

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
 Frame = +2

Query: 209 MVVNMMKWRPWLTTPTRCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKSSGELNTMMV 388
           MV  M  W P    P R F+V+L +   EGL+A   A +      SSP   +     + V
Sbjct: 1   MVARMWPWPP----PARKFRVRLVVRRAEGLTATATATAS-----SSPVAEA----KVAV 47

Query: 389 NVKWKGPRRALGSRFKRSLKRAKTTARFLEDSPLVTWNEEFEHTCILTLT---KDG-QFL 556
            V+WKGP+ +     +R +   +T      ++  V W EEFE     T T   K G  F 
Sbjct: 48  EVRWKGPKASPLGSLRRVMHSNRTRLESAAEA-AVAWEEEFERVETFTATSHRKSGAAFH 106

Query: 557 PWDICF 574
           PWD+ F
Sbjct: 107 PWDLAF 112


>tr|A2ZMV2|A2ZMV2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_39155 PE=4 SV=1
          Length = 749

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
 Frame = +2

Query: 236 PWLTTPTRCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKSSGELNTMMVNVKWKGPRR 415
           PW   P R F+V+L +   EGL+A   A +      SSP   +     + V V+WKGP+ 
Sbjct: 3   PW-PPPARKFRVRLVVRRAEGLTATATATAS-----SSPVAEA----KVAVEVRWKGPKA 52

Query: 416 ALGSRFKRSLKRAKTTARFLEDSPLVTWNEEFEHTCILTLT---KDG-QFLPWDICF 574
           +     +R +   +T      ++  V W EEFE     T T   K G  F PWD+ F
Sbjct: 53  SPLGSLRRVMHSNRTRLESAAEA-AVAWEEEFERVETFTATSHRKSGAAFHPWDLAF 108


>tr|Q10G00|Q10G00_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g44670 PE=4 SV=1
          Length = 784

 Score = 40.0 bits (92), Expect = 0.11
 Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 29/151 (19%)
 Frame = +2

Query: 209 MVVNMMKW-RPWLTTPTRCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKSSGELNTMM 385
           MV  MM+W RP      R F+V+L +   EGL    AA +    +  + +  +     + 
Sbjct: 1   MVARMMRWPRP---PAARKFRVRLVVRRAEGLQQPCAAAAEHAASAEAEAPPT----RVA 53

Query: 386 VNVKWKGPRRA-LGSRFKRSLKRAKTTARFLEDSPLV----------------------- 493
             V+WKGP+ + L S  + +++R +T     E + +V                       
Sbjct: 54  AEVRWKGPKASPLSSLRRTAVRRNRTREAEAEAAAVVACATAADDAAAAAGAGDAAGVVV 113

Query: 494 -TWNEEFEHTCILTLT---KDGQFLPWDICF 574
             W EEFE T  L      +   F PW++ F
Sbjct: 114 AAWEEEFESTVTLAAASHREHAAFQPWELAF 144


>tr|Q9SKK3|Q9SKK3_ARATH Expressed protein OS=Arabidopsis thaliana
           GN=At2g25460 PE=2 SV=2
          Length = 423

 Score = 37.7 bits (86), Expect = 0.52
 Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
 Frame = +2

Query: 257 RCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKSSGELNTMMVNVKWKGPRRALGSRFK 436
           R   V +K   L+GL A+L    GD        +++G+  + MV VKWKGP    G  F 
Sbjct: 6   RKLHVTVKPVRLDGLPAIL----GD--------ETAGKNLSAMVEVKWKGPVSGFGLGFV 53

Query: 437 RSLKRAKTTARFLEDSPL------VTWNEEFEHTCILTLTKDGQFLPWDICF 574
               R+          P+      V W EEFE  C +         PW++ F
Sbjct: 54  -PFYRSNRPVNHTSSKPIALGSNHVEWEEEFERVCCIV-------GPWNLSF 97


>tr|Q8W4Q2|Q8W4Q2_ARATH SYNC1 protein OS=Arabidopsis thaliana
           GN=At2g25460 PE=2 SV=1
          Length = 423

 Score = 37.7 bits (86), Expect = 0.52
 Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
 Frame = +2

Query: 257 RCFQVKLKLHCLEGLSALLAAKSGDLGTVSSPSKSSGELNTMMVNVKWKGPRRALGSRFK 436
           R   V +K   L+GL A+L    GD        +++G+  + MV VKWKGP    G  F 
Sbjct: 6   RKLHVTVKPVRLDGLPAIL----GD--------ETAGKNLSAMVEVKWKGPVSGFGLGFV 53

Query: 437 RSLKRAKTTARFLEDSPL------VTWNEEFEHTCILTLTKDGQFLPWDICF 574
               R+          P+      V W EEFE  C +         PW++ F
Sbjct: 54  -PFYRSNRPVNHTSSKPIALGSNHVEWEEEFERVCCIV-------GPWNLSF 97