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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955370
Clone id TST39A01NGRL0022_O17
Library
Length 376
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_O17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTTTTGAGCGATATA
AGGGGGCATTGGATTAAATTTGTCTTGTATACATGTACAGCAAAATCAAAGCACGATAGA
TGGCCAAAAACTACAAAAAAATTATGTTTCCTGAAATTTGTTTGTGATCTTTGTAGGAGC
CACCCTAGCAAGAGAGGAAATGGGTGGATATGGTTCTGGAACGCATTTACATAAAGGGAG
ACTAGGATTAGAGAGTTTTCATTCAAATTGGAATAGCTGAAAAAAAGTAGCAAGAGCTAT
ACGAGAACATAGGAGATAACACCAGGTTTTATGTACAAGTAAACCAAAAAAGCCCTATTT
AAAATAAATGCCACAA
■■Homology search results ■■ -
sp_hit_id P52547
Definition sp|P52547|GN_HHV6Z Glycoprotein N homolog OS=Human herpesvirus 6B (strain Z29)
Align length 46
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955370|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_O17, 5'
         (326 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52547|GN_HHV6Z Glycoprotein N homolog OS=Human herpesvirus 6...    30   3.8  
sp|Q3U3E2|F117B_MOUSE Protein FAM117B OS=Mus musculus GN=Fam117b...    29   6.5  

>sp|P52547|GN_HHV6Z Glycoprotein N homolog OS=Human herpesvirus 6B
           (strain Z29) GN=U46 PE=3 SV=1
          Length = 84

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/46 (45%), Positives = 23/46 (50%)
 Frame = +3

Query: 84  QKNYVS*NLFVIFVGATLAREEMGGYGSGTHLHKGRLGLESFHSNW 221
           Q+ YVS  LF I V A  A  EM  Y S  H H   + L SF S W
Sbjct: 9   QRLYVSLWLFYILVFA--AATEMDFYSSECHSHTYEIVLNSFSSIW 52


>sp|Q3U3E2|F117B_MOUSE Protein FAM117B OS=Mus musculus GN=Fam117b
           PE=2 SV=1
          Length = 584

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -2

Query: 199 NPSLPLCKCVPEPYPPISSLARVAPTKITNKFQET*FFCSFWPSIVL*FCCTCIQDK 29
           +PS P+CK   + +PP SS + +     +       +    WP  +      C++DK
Sbjct: 188 SPSAPVCKAGDKTHPPSSSSSSIIRRTSSLDTLAAPYLAGHWPRDIRGQAAPCMRDK 244
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955370|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_O17, 5'
         (326 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******