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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955371
Clone id TST39A01NGRL0022_O18
Library
Length 361
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_O18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAGGAAGGCGAGCAGCTTGTGAAAGAAGGAGAGAAGGAGATCAGCAGTGTGGTTGCCCC
AGCAGCAGCAGCGGTTGCATCGAAGCCTTCGTTTGACAGCCCGCCCCCTGCCTACCAGGC
CGCAGGAGTTGTGGGTGCAGAGCTTGATACTGGCCTCCTTGCTTCCTCTGCGGTTACAGG
TTTGGTCAGTGAGTCATGAACCCTCTAATGTTTCCTGTAATCTGATCAATTCTATCATCC
GTTAAGGGCTCCCGACATTGAGTTTGTGCATATGCTCAGTTTTTCTTGTGCTTATATGTA
TTGGTCTTCTTCCCAATATCATGTGTGTTATTGTGCGTAAAAAAAAAAAAAAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id Q8CJB9
Definition sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus
Align length 49
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955371|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_O18, 5'
         (338 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus ...    29   6.4  
sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo...    29   6.4  
sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus m...    29   6.4  
sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macac...    29   6.4  
sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo ...    29   6.4  
sp|Q0CPW4|PAN1_ASPTN Actin cytoskeleton-regulatory complex prote...    29   8.4  

>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus
            norvegicus GN=Rnf40 PE=1 SV=1
          Length = 1002

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 193  LTDQTCNRRGSKEASIKLCTHNSCGLVGRGRAVKRRLRCNRC-CCWGNH 50
            LT   CN R  K+A +  C H  C    RGR   R+ +C +C   +G H
Sbjct: 947  LTCPCCNTR-KKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAH 994


>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo
            abelii GN=RNF40 PE=2 SV=1
          Length = 1001

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 193  LTDQTCNRRGSKEASIKLCTHNSCGLVGRGRAVKRRLRCNRC-CCWGNH 50
            LT   CN R  K+A +  C H  C    RGR   R+ +C +C   +G H
Sbjct: 946  LTCPCCNTR-KKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAH 993


>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus
            musculus GN=Rnf40 PE=2 SV=2
          Length = 1001

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 193  LTDQTCNRRGSKEASIKLCTHNSCGLVGRGRAVKRRLRCNRC-CCWGNH 50
            LT   CN R  K+A +  C H  C    RGR   R+ +C +C   +G H
Sbjct: 946  LTCPCCNTR-KKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAH 993


>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca
            fascicularis GN=RNF40 PE=2 SV=1
          Length = 1001

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 193  LTDQTCNRRGSKEASIKLCTHNSCGLVGRGRAVKRRLRCNRC-CCWGNH 50
            LT   CN R  K+A +  C H  C    RGR   R+ +C +C   +G H
Sbjct: 946  LTCPCCNTR-KKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAH 993


>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo
            sapiens GN=RNF40 PE=1 SV=3
          Length = 1001

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 193  LTDQTCNRRGSKEASIKLCTHNSCGLVGRGRAVKRRLRCNRC-CCWGNH 50
            LT   CN R  K+A +  C H  C    RGR   R+ +C +C   +G H
Sbjct: 946  LTCPCCNTR-KKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAH 993


>sp|Q0CPW4|PAN1_ASPTN Actin cytoskeleton-regulatory complex protein
           pan1 OS=Aspergillus terreus (strain NIH 2624) GN=pan1
           PE=3 SV=2
          Length = 1469

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = -1

Query: 266 QTQCREPLTDDRIDQITGNIRGFMTH*PNL*PQRKQGGQYQALHPQLLRPGRQGAGCQTK 87
           Q Q ++P     ++Q+T    GF++    L P +   GQ   L PQ    G  G   Q  
Sbjct: 303 QPQPQQPTNSQLLNQLTAQPTGFLSQPTGLSPNQAPFGQQSNLAPQ--PTGLPGQPQQQS 360

Query: 86  ASMQPLLLLGQP 51
              QP   +  P
Sbjct: 361 LQPQPTGFMSNP 372
tr_hit_id Q6BE25
Definition tr|Q6BE25|Q6BE25_CUCPE Cycloartenol synthase OS=Cucurbita pepo
Align length 26
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955371|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_O18, 5'
         (338 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6BE25|Q6BE25_CUCPE Cycloartenol synthase OS=Cucurbita pepo G...    36   0.84 
tr|B8LNJ1|B8LNJ1_PICSI Putative uncharacterized protein OS=Picea...    35   2.5  
tr|A9NMX3|A9NMX3_PICSI Putative uncharacterized protein OS=Picea...    35   2.5  

>tr|Q6BE25|Q6BE25_CUCPE Cycloartenol synthase OS=Cucurbita pepo
           GN=CPX PE=2 SV=1
          Length = 766

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +1

Query: 106 PCLPGRRSCGCRA*YWPPCFLCGYRF 183
           PC PGR  C CR  Y P C+L G RF
Sbjct: 256 PCHPGRMWCHCRMVYLPMCYLYGKRF 281


>tr|B8LNJ1|B8LNJ1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 160

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +2

Query: 2   KEGEQLVKEGEKEIXXXXXXXXXXXXXKP---SFDSPPPAYQAAGVVGAELDTGLLASSA 172
           ++ ++LVKEGE+E+                  + + P P  QA  V GAE+   L+ASS 
Sbjct: 94  EKAKELVKEGEQEVEIVAETVKETAENLEKIAALEGPGPVVQAGVVAGAEVIGVLVASSV 153

Query: 173 VTGLV 187
           V G+V
Sbjct: 154 VNGIV 158


>tr|A9NMX3|A9NMX3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 160

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +2

Query: 2   KEGEQLVKEGEKEIXXXXXXXXXXXXXKP---SFDSPPPAYQAAGVVGAELDTGLLASSA 172
           ++ ++LVKEGE+E+                  + + P P  QA  V GAE+   L+ASS 
Sbjct: 94  EKAKELVKEGEQEVEIVAETVKETAENLEKIAALEGPGPVVQAGVVAGAEVIGVLVASSV 153

Query: 173 VTGLV 187
           V G+V
Sbjct: 154 VNGIV 158