DK955378
Clone id TST39A01NGRL0022_P01
Library
Length 641
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_P01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCCTAGAAGAGTTGCCTGCTGTGAGGAGACTGAGCCATGGCAGCCAGCACAGCCTCCCTC
TCATCTGCGACATTCAGTGGGCAGCAGCTGAATCCCGTGAATGAATTATCACGCAAGGTG
GGAGCCGGTGAGGCTCGCGTGCAGATGATGGCACCCAAGAAGGCCTCTTCCTCCGGCAGC
ATCTGGTATGGCGCCGACCGTCCCCTGTACCTGGGCCCTTTCTCCGGCAGCCCACCGTCG
TACTTGACGGGAGAATTCCCTGGAGACTACGGCTGGGACACCGCTGGGCTGTCGGCGGAT
CCAGAGACCTTCGCAAAGAACCGGGAGCTGGAGGTTATCCACTCCAGGTGGGCAATGCTG
GGCGCTCTTGGATGCGTCACCCCTGAACTTCTGGCCAAGAACGGCGTCAAGTTTGGAGAG
GCCGTATGGTTCAAGGCGGGCTCACAAATCTTCGCAGATGGGGGCCTCGACTACCTGGGT
AATCCCAGCCTGGTGCACGCTCAAAGCATCCTAGCCATCTGGGCCTGCCAGGTCATCCTC
ATGGGCGCCGTGGAGGGCTACCGCGTTGCAGGCGGGCCCCTGGGTGAGGTGGAGGACCCC
ATTTACCCGGGCGGCTCCTTCGACCCCTTGGGTCTGGCCGA
■■Homology search results ■■ -
sp_hit_id P15195
Definition sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum
Align length 187
Score (bit) 374.0
E-value 1.0e-103
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955378|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P01, 5'
(641 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb... 374 e-103
sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplast... 318 1e-86
sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloropl... 315 2e-85
sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9, chlorop... 314 3e-85
sp|P12329|CB21_MAIZE Chlorophyll a-b binding protein 1, chloropl... 312 8e-85
sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplas... 312 1e-84
sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloropl... 310 3e-84
sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII ty... 310 4e-84
sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb... 310 5e-84
sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chlorop... 308 1e-83
sp|P04784|CB21_WHEAT Chlorophyll a-b binding protein, chloroplas... 308 1e-83
sp|P12332|CB21_SILPR Chlorophyll a-b binding protein, chloroplas... 308 2e-83
sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chlorop... 307 3e-83
sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chlorop... 307 3e-83
sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chlorop... 307 3e-83
sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 memb... 307 3e-83
sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloropl... 306 6e-83
sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chlorop... 306 8e-83
sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A, chlorop... 305 1e-82
sp|P27496|CB25_TOBAC Chlorophyll a-b binding protein 50, chlorop... 305 1e-82
sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplas... 305 1e-82
sp|P09756|CB23_SOYBN Chlorophyll a-b binding protein 3, chloropl... 305 1e-82
sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chlorop... 304 2e-82
sp|P92919|CB23_APIGR Chlorophyll a-b binding protein, chloroplas... 304 2e-82
sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protein, chloroplas... 304 3e-82
sp|P04783|CB25_PETSP Chlorophyll a-b binding protein 91R, chloro... 304 3e-82
sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloropl... 304 3e-82
sp|P08963|CB22_HORVU Chlorophyll a-b binding protein 2, chloropl... 304 3e-82
sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chlorop... 303 7e-82
sp|P04777|CB21_ARATH Chlorophyll a-b binding protein 165/180, ch... 302 1e-81

>sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member
F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3
SV=1
Length = 265

Score = 374 bits (961), Expect = e-103
Identities = 179/187 (95%), Positives = 183/187 (97%)
Frame = +1

Query: 79 GQQLNPVNELSRKVGAGEARVQMMAPKKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEF 258
GQQL PVNELSRKVGAGEARVQMMAPK + SGSIWYG+DRPLYLGPFSGSPPSYL+GEF
Sbjct: 14 GQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEF 73

Query: 259 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKA 438
PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKA
Sbjct: 74 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKA 133

Query: 439 GSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGS 618
GSQIFA+GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGS
Sbjct: 134 GSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGS 193

Query: 619 FDPLGLA 639
FDPLGLA
Sbjct: 194 FDPLGLA 200


>sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplastic
OS=Physcomitrella patens PE=3 SV=1
Length = 269

Score = 318 bits (815), Expect = 1e-86
Identities = 157/190 (82%), Positives = 170/190 (89%), Gaps = 3/190 (1%)
Frame = +1

Query: 79 GQQL-NPVNELSRKV-GAGEARVQMMAP-KKASSSGSIWYGADRPLYLGPFSGSPPSYLT 249
GQ L PVNELSRKV G EARV M K++ S +IWYGADRP +LGPFSG PSYL
Sbjct: 14 GQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLN 73

Query: 250 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVW 429
GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+TPELLAK+GVKFGEAVW
Sbjct: 74 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVW 133

Query: 430 FKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYP 609
FKAG+QIF++GGLDYLGNPSLVHAQSILAIWACQV+LMGAVEGYRVAGGPLGEV DPIYP
Sbjct: 134 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYP 193

Query: 610 GGSFDPLGLA 639
GGSFDPLGLA
Sbjct: 194 GGSFDPLGLA 203



Score = 31.2 bits (69), Expect = 4.8
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1

Query: 223 SGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKN 402
+G P +T +D GL+ DP+TFA+ + E+ + R AM G ++
Sbjct: 180 AGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239

Query: 403 G 405
G
Sbjct: 240 G 240


>sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1,
chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R
PE=2 SV=2
Length = 265

Score = 315 bits (806), Expect = 2e-85
Identities = 150/175 (85%), Positives = 160/175 (91%), Gaps = 4/175 (2%)
Frame = +1

Query: 127 GEARVQMMA----PKKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLS 294
GEAR+ M PK A+SSGS WYGADR LYLGP SG PPSYLTGEFPGDYGWDTAGLS
Sbjct: 26 GEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLS 85

Query: 295 ADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDY 474
ADPETFAKNRELEVIHSRWAMLGALGCV PELLA+NGVKFGEAVWFKAGSQIF++GGLDY
Sbjct: 86 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDY 145

Query: 475 LGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLA 639
LGNPSL+HAQSILAIWA QV+LMGAVEGYR+AGGPLGEV DP+YPGG+FDPLGLA
Sbjct: 146 LGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLA 200


>sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9,
chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1
Length = 265

Score = 314 bits (804), Expect = 3e-85
Identities = 150/175 (85%), Positives = 159/175 (90%), Gaps = 4/175 (2%)
Frame = +1

Query: 127 GEARVQMMAP----KKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLS 294
GEARV M K A+SSGS WYG DR LYLGP SG PPSYLTGEFPGDYGWDTAGLS
Sbjct: 26 GEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLS 85

Query: 295 ADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDY 474
ADPETFAKNRELEVIHSRWAMLGALGCV PELLA+NGVKFGEAVWFKAGSQIF++GGLDY
Sbjct: 86 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDY 145

Query: 475 LGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLA 639
LGNPSL+HAQSILAIWACQV+LMGA+EGYRVAGGPLGEV DP+YPGG+FDPLGLA
Sbjct: 146 LGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLA 200


>sp|P12329|CB21_MAIZE Chlorophyll a-b binding protein 1,
chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1
Length = 262

Score = 312 bits (800), Expect = 8e-85
Identities = 149/179 (83%), Positives = 162/179 (90%), Gaps = 4/179 (2%)
Frame = +1

Query: 115 KVGA-GEARVQM---MAPKKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDT 282
KVG+ GE R+ M + K ++SGS WYG DR YLGPFSG PPSYLTGEFPGDYGWDT
Sbjct: 19 KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 78

Query: 283 AGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADG 462
AGLSADPETFAKNRELEVIHSRWAMLGALGCV PELL++NGVKFGEAVWFKAGSQIF++G
Sbjct: 79 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 138

Query: 463 GLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLA 639
GLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLA
Sbjct: 139 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 197


>sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplastic
OS=Zea mays PE=2 SV=1
Length = 265

Score = 312 bits (799), Expect = 1e-84
Identities = 149/175 (85%), Positives = 158/175 (90%), Gaps = 4/175 (2%)
Frame = +1

Query: 127 GEARVQMMAP----KKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLS 294
GEARV M K A++SGS WYG DR LYLGP SG PPSYLTGEFPGDYGWDTAGLS
Sbjct: 26 GEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLS 85

Query: 295 ADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDY 474
ADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAGSQIF++GGLDY
Sbjct: 86 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDY 145

Query: 475 LGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLA 639
LGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLA
Sbjct: 146 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 200


>sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2,
chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R
PE=2 SV=2
Length = 261

Score = 310 bits (795), Expect = 3e-84
Identities = 148/174 (85%), Positives = 158/174 (90%), Gaps = 3/174 (1%)
Frame = +1

Query: 127 GEARVQMM---APKKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSA 297
GE R+ M A K ++SGS WYGADR LYLGP SG PPSYLTGEFPGDYGWDTAGLSA
Sbjct: 23 GEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 82

Query: 298 DPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDYL 477
DPETFAKNRELEVIHSRWAMLGALGCV PELLA+NGVKFGEAVWFKAGSQIF++GGLDYL
Sbjct: 83 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 142

Query: 478 GNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLA 639
GNPSL+HAQSILAIWA QV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLA
Sbjct: 143 GNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 196


>sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII type
I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1
Length = 255

Score = 310 bits (794), Expect = 4e-84
Identities = 148/172 (86%), Positives = 156/172 (90%), Gaps = 1/172 (0%)
Frame = +1

Query: 127 GEARVQMM-APKKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADP 303
G A+ M K+ SSGS WYG DR YLGPFSG PPSYLTGEFPGDYGWDTAGLSADP
Sbjct: 19 GNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 78

Query: 304 ETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDYLGN 483
ETFAKNRELEVIHSRWAMLGALGCV PELL++NGVKFGEAVWFKAGSQIF++GGLDYLGN
Sbjct: 79 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGN 138

Query: 484 PSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLA 639
PSLVHAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPIYPGGSFDPLGLA
Sbjct: 139 PSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLA 190


>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member
1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1
Length = 274

Score = 310 bits (793), Expect = 5e-84
Identities = 152/175 (86%), Positives = 158/175 (90%), Gaps = 4/175 (2%)
Frame = +1

Query: 127 GEARVQMM--APKK--ASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLS 294
GEARV M KK AS+S S WYG DR LYLGPFSG PPSYLTGEFPGDYGWDTAGLS
Sbjct: 35 GEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 94

Query: 295 ADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDY 474
ADPE FAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF++GGLDY
Sbjct: 95 ADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDY 154

Query: 475 LGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLA 639
LGNPSLVHAQSILAIWACQVILMGAVEGYR+AGGPLGEV DPIYPGGSFDPLGLA
Sbjct: 155 LGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLA 209



Score = 30.8 bits (68), Expect = 6.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1

Query: 223 SGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKN 402
+G P +T +D GL+ DPE FA+ + E+ + R AM G ++
Sbjct: 186 AGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 245

Query: 403 G 405
G
Sbjct: 246 G 246


>sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80,
chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1
Length = 269

Score = 308 bits (790), Expect = 1e-83
Identities = 151/188 (80%), Positives = 166/188 (88%), Gaps = 1/188 (0%)
Frame = +1

Query: 79 GQQLNPVNELSRKVGAGEARVQMMAP-KKASSSGSIWYGADRPLYLGPFSGSPPSYLTGE 255
G+QL +N S+++GA ++ A KK +SSGS WYG DR YLGPFSG PSYLTGE
Sbjct: 18 GKQLK-LNPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGE 76

Query: 256 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFK 435
FPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCV PELL++NGVKFGEAVWFK
Sbjct: 77 FPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFK 136

Query: 436 AGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGG 615
AGSQIF++GGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYR+AGGPLGEV DP+YPGG
Sbjct: 137 AGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGG 196

Query: 616 SFDPLGLA 639
SFDPLGLA
Sbjct: 197 SFDPLGLA 204


tr_hit_id A9TL35
Definition tr|A9TL35|A9TL35_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 184
Score (bit) 332.0
E-value 9.0e-90
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955378|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P01, 5'
(641 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TL35|A9TL35_PHYPA Predicted protein OS=Physcomitrella paten... 332 9e-90
tr|Q765P5|Q765P5_PHYPA Light-harvesting chlorophyll a/b-binding ... 328 1e-88
tr|A9T914|A9T914_PHYPA Predicted protein OS=Physcomitrella paten... 328 2e-88
tr|A9S6S7|A9S6S7_PHYPA Predicted protein OS=Physcomitrella paten... 327 5e-88
tr|Q9SXW8|Q9SXW8_PHYPA Chlorophyll a/b-binding protein OS=Physco... 326 6e-88
tr|A9T769|A9T769_PHYPA Predicted protein OS=Physcomitrella paten... 326 6e-88
tr|A9RT62|A9RT62_PHYPA Predicted protein OS=Physcomitrella paten... 326 6e-88
tr|A9RAS2|A9RAS2_PHYPA Predicted protein OS=Physcomitrella paten... 326 6e-88
tr|A9S6F4|A9S6F4_PHYPA Predicted protein OS=Physcomitrella paten... 324 3e-87
tr|A9RJS3|A9RJS3_PHYPA Predicted protein OS=Physcomitrella paten... 324 3e-87
tr|A9RNP2|A9RNP2_PHYPA Predicted protein OS=Physcomitrella paten... 323 4e-87
tr|Q765P6|Q765P6_PHYPA Light-harvesting chlorophyll a/b-binding ... 322 2e-86
tr|A9RBQ3|A9RBQ3_PHYPA Predicted protein OS=Physcomitrella paten... 322 2e-86
tr|Q5CCK8|Q5CCK8_ADICA Chlorophyll a/b-binding protein OS=Adiant... 321 3e-86
tr|A9RBQ5|A9RBQ5_PHYPA Predicted protein OS=Physcomitrella paten... 318 2e-85
tr|A9SGM1|A9SGM1_PHYPA Predicted protein OS=Physcomitrella paten... 317 3e-85
tr|Q9M600|Q9M600_EUPES Chlorophyll a/b binding protein OS=Euphor... 317 4e-85
tr|Q4VV47|Q4VV47_PICSI Chloroplast light harvesting chlorophyll ... 315 1e-84
tr|Q40770|Q40770_PICAB Light harvesting chlorophyll a /b-binding... 315 1e-84
tr|B4FUA1|B4FUA1_MAIZE Chlorophyll a-b binding protein 1 OS=Zea ... 315 1e-84
tr|A9NK15|A9NK15_PICSI Putative uncharacterized protein OS=Picea... 315 1e-84
tr|Q4VV55|Q4VV55_9CONI Chloroplast light harvesting chlorophyll ... 315 2e-84
tr|Q4VV54|Q4VV54_PINLA Chloroplast light harvesting chlorophyll ... 315 2e-84
tr|Q4VV53|Q4VV53_PINMO Chloroplast light harvesting chlorophyll ... 315 2e-84
tr|Q4VV52|Q4VV52_PINST Chloroplast light harvesting chlorophyll ... 315 2e-84
tr|Q40771|Q40771_PICAB Light harvesting chlorophyll a /b-binding... 315 2e-84
tr|Q0J2G2|Q0J2G2_ORYSJ Os09g0346500 protein OS=Oryza sativa subs... 315 2e-84
tr|B8BEP6|B8BEP6_ORYSI Putative uncharacterized protein OS=Oryza... 315 2e-84
tr|B6T2Y9|B6T2Y9_MAIZE Chlorophyll a-b binding protein 2 OS=Zea ... 315 2e-84
tr|Q8W0E6|Q8W0E6_ORYSJ cDNA clone:001-013-E06, full insert seque... 314 3e-84

>tr|A9TL35|A9TL35_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_108362 PE=4 SV=1
Length = 263

Score = 332 bits (852), Expect = 9e-90
Identities = 160/184 (86%), Positives = 169/184 (91%)
Frame = +1

Query: 88 LNPVNELSRKVGAGEARVQMMAPKKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGD 267
L PVNELSRKVG EARV M +K+S S SIWYGADRP +LGPFSG PSYL GEF GD
Sbjct: 18 LKPVNELSRKVGTSEARVSM---RKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGD 74

Query: 268 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQ 447
YGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGCVTPELLAKNGVKFGEAVWFKAG+Q
Sbjct: 75 YGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQ 134

Query: 448 IFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDP 627
IF++GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV DPIYPGGSFDP
Sbjct: 135 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPIYPGGSFDP 194

Query: 628 LGLA 639
LGLA
Sbjct: 195 LGLA 198


>tr|Q765P5|Q765P5_PHYPA Light-harvesting chlorophyll a/b-binding
protein 2 (Predicted protein) OS=Physcomitrella patens
subsp. patens GN=PpLhcb2 PE=4 SV=1
Length = 267

Score = 328 bits (842), Expect = 1e-88
Identities = 158/185 (85%), Positives = 169/185 (91%), Gaps = 1/185 (0%)
Frame = +1

Query: 88 LNPVNELSRKVGAGEARVQMMAP-KKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPG 264
L PVNELSRKVG+ +ARV M K++ S SIWYGADRP YLGPFSG PSYL GEF G
Sbjct: 18 LKPVNELSRKVGSSQARVTMRRTVNKSAGSDSIWYGADRPKYLGPFSGETPSYLNGEFAG 77

Query: 265 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGS 444
DYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGCVTPELLAK+GVKFGEAVWFKAG+
Sbjct: 78 DYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKFGEAVWFKAGA 137

Query: 445 QIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFD 624
QIF++GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV DPIYPGGSFD
Sbjct: 138 QIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPIYPGGSFD 197

Query: 625 PLGLA 639
PLGLA
Sbjct: 198 PLGLA 202


>tr|A9T914|A9T914_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_220036 PE=4 SV=1
Length = 263

Score = 328 bits (841), Expect = 2e-88
Identities = 157/184 (85%), Positives = 170/184 (92%)
Frame = +1

Query: 88 LNPVNELSRKVGAGEARVQMMAPKKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGD 267
L PVNELSR+VGA EARV M +K++ S SIWYGADRP +LGPFSG PSYL GEF GD
Sbjct: 18 LKPVNELSRRVGANEARVTM---RKSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGD 74

Query: 268 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQ 447
YGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+TPELLAK+GVKFGEAVWFKAG+Q
Sbjct: 75 YGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQ 134

Query: 448 IFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDP 627
IF++GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV DPIYPGGSFDP
Sbjct: 135 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPIYPGGSFDP 194

Query: 628 LGLA 639
LGLA
Sbjct: 195 LGLA 198


>tr|A9S6S7|A9S6S7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_209208 PE=4 SV=1
Length = 263

Score = 327 bits (837), Expect = 5e-88
Identities = 160/184 (86%), Positives = 168/184 (91%)
Frame = +1

Query: 88 LNPVNELSRKVGAGEARVQMMAPKKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGD 267
L +NELSRKVG +ARV M +KASSS SIWYGADRP YLGP SG PSYLTGEF GD
Sbjct: 18 LKSINELSRKVGNVQARVTM---RKASSSDSIWYGADRPKYLGPLSGETPSYLTGEFAGD 74

Query: 268 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQ 447
YGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQ
Sbjct: 75 YGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQ 134

Query: 448 IFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDP 627
IF++GGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRVAGGPLGEV DPIYPGGSFDP
Sbjct: 135 IFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGEVTDPIYPGGSFDP 194

Query: 628 LGLA 639
LGLA
Sbjct: 195 LGLA 198


>tr|Q9SXW8|Q9SXW8_PHYPA Chlorophyll a/b-binding protein
OS=Physcomitrella patens PE=2 SV=1
Length = 268

Score = 326 bits (836), Expect = 6e-88
Identities = 157/185 (84%), Positives = 169/185 (91%), Gaps = 1/185 (0%)
Frame = +1

Query: 88 LNPVNELSRKVGAGEARVQMMAP-KKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPG 264
L PV+ELSRKV AGEARV M K+S S SIWYGADRP +LGPFSG PSYL GEF G
Sbjct: 19 LKPVSELSRKVNAGEARVTMRKTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAG 78

Query: 265 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGS 444
DYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+TPELLAK+GVKFGEAVWFKAG+
Sbjct: 79 DYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGA 138

Query: 445 QIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFD 624
QIF++GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG+V DPIYPGGSFD
Sbjct: 139 QIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFD 198

Query: 625 PLGLA 639
PLGLA
Sbjct: 199 PLGLA 203


>tr|A9T769|A9T769_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_219547 PE=4 SV=1
Length = 268

Score = 326 bits (836), Expect = 6e-88
Identities = 157/185 (84%), Positives = 169/185 (91%), Gaps = 1/185 (0%)
Frame = +1

Query: 88 LNPVNELSRKVGAGEARVQMMAP-KKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPG 264
L PV+ELSRKV AGEARV M K+S S SIWYGADRP +LGPFSG PSYL GEF G
Sbjct: 19 LKPVSELSRKVNAGEARVTMRKTVSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAG 78

Query: 265 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGS 444
DYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+TPELLAK+GVKFGEAVWFKAG+
Sbjct: 79 DYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGA 138

Query: 445 QIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFD 624
QIF++GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG+V DPIYPGGSFD
Sbjct: 139 QIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFD 198

Query: 625 PLGLA 639
PLGLA
Sbjct: 199 PLGLA 203


>tr|A9RT62|A9RT62_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_105126 PE=4 SV=1
Length = 265

Score = 326 bits (836), Expect = 6e-88
Identities = 157/184 (85%), Positives = 169/184 (91%)
Frame = +1

Query: 88 LNPVNELSRKVGAGEARVQMMAPKKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGD 267
L PVNELSRKVG+ EARV M K S+S SIWYGADRP YLGPFSG PSYLTGEF GD
Sbjct: 18 LKPVNELSRKVGSSEARVTMRRTVK-STSDSIWYGADRPKYLGPFSGETPSYLTGEFAGD 76

Query: 268 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQ 447
YGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+TPELLAK+GVKFGEAVWFKAG+Q
Sbjct: 77 YGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQ 136

Query: 448 IFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDP 627
IF++GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYRVAGGPLGE+ DPIYPGGSFDP
Sbjct: 137 IFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVAGGPLGEITDPIYPGGSFDP 196

Query: 628 LGLA 639
LGLA
Sbjct: 197 LGLA 200


>tr|A9RAS2|A9RAS2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_155384 PE=4 SV=1
Length = 267

Score = 326 bits (836), Expect = 6e-88
Identities = 157/185 (84%), Positives = 169/185 (91%), Gaps = 1/185 (0%)
Frame = +1

Query: 88 LNPVNELSRKVGAGEARVQMMAP-KKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPG 264
L PVNELSRKVG EARV M K++ S SIWYGADRP +LGPFSG PSYLTGEF G
Sbjct: 18 LKPVNELSRKVGNVEARVTMRRTVSKSAGSDSIWYGADRPKFLGPFSGETPSYLTGEFAG 77

Query: 265 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGS 444
DYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+TPELLAK+GVKFGEAVWFKAG+
Sbjct: 78 DYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGA 137

Query: 445 QIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFD 624
QIF++GGLDYLGNPSLVHAQSILAIWACQV+LMGAVEGYRVAGGPLGEV DPIYPGGSFD
Sbjct: 138 QIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFD 197

Query: 625 PLGLA 639
PLGLA
Sbjct: 198 PLGLA 202


>tr|A9S6F4|A9S6F4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_124625 PE=4 SV=1
Length = 267

Score = 324 bits (830), Expect = 3e-87
Identities = 158/189 (83%), Positives = 170/189 (89%), Gaps = 2/189 (1%)
Frame = +1

Query: 79 GQQL-NPVNELSRKVGAGEARVQMMAP-KKASSSGSIWYGADRPLYLGPFSGSPPSYLTG 252
GQ L PVNELSRKVG EARV M K++ S SIWYGADRP +LGPFSG PSYL G
Sbjct: 14 GQSLVKPVNELSRKVGNVEARVTMRRTVSKSAGSDSIWYGADRPKFLGPFSGETPSYLNG 73

Query: 253 EFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWF 432
EF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+TPELLAK+GVKFGEAVWF
Sbjct: 74 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWF 133

Query: 433 KAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPG 612
KAG+QIF++GGLDYLGNPSLVHAQSILAIWACQV+LMGAVEGYRVAGGPLGEV DPIYPG
Sbjct: 134 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPG 193

Query: 613 GSFDPLGLA 639
GSFDPLGLA
Sbjct: 194 GSFDPLGLA 202


>tr|A9RJS3|A9RJS3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_175594 PE=4 SV=1
Length = 267

Score = 324 bits (830), Expect = 3e-87
Identities = 157/185 (84%), Positives = 169/185 (91%), Gaps = 1/185 (0%)
Frame = +1

Query: 88 LNPVNELSRKVGAGEARVQMM-APKKASSSGSIWYGADRPLYLGPFSGSPPSYLTGEFPG 264
L PVNELSRKVG EARV M + K+++S SIWYGADRP YLGPFSG PSYL GEF G
Sbjct: 18 LKPVNELSRKVGNVEARVSMRKSASKSAASDSIWYGADRPKYLGPFSGETPSYLNGEFAG 77

Query: 265 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGS 444
DYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGCVTPELLAK+GVKFGEAVWFKAG+
Sbjct: 78 DYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKFGEAVWFKAGA 137

Query: 445 QIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFD 624
QIF++GGLDYLGNPSLVHAQSILAIWA QVILMGAVEGYRVAGGPLG+V DPIYPGGSFD
Sbjct: 138 QIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFD 197

Query: 625 PLGLA 639
PLGLA
Sbjct: 198 PLGLA 202