DK955382 |
Clone id |
TST39A01NGRL0022_P05 |
Library |
TST39 |
Length |
554 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_P05. 5' end sequence. |
Accession |
DK955382 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL159Contig1 |
Sequence |
GTCGTCTTTGGCAGCTTCAAGCACCTTCTCGTCTGTGGCTGCAGTGGGCTCATGCTCCTT CACGCCCGGCCTCACCGTGCCATCGCGCGTGCAGCTCCGCCCGATTTCTTTTCCATCGCG GCTTTGCGTGCGCGCTGCCGAGGGTGAGGCCGCCGCTGCCCCTCCCGCCGAAAAGCCTGC GGAGAAGCCCAAGCCCATCGGACCGCCTCGTGGATCCAAGGTAAAGATTTTGAGGCCTGA ATCCTACTGGTTCAATGGAGTGGGAACGGTTGTTGCTGTGGATCAGGCTCCAGGAGTTCG ATATCCCGTGGTTGTACGATTTGAGAAAGTCAACTATGCCGGTGTGTCTACGAACAACTA CGCCTTGGATGAGATTTGTGCTGTGTAGGGAGCGCAGAAGCACTACCATTCCCTAGTGTA GATCTTCCTGTAACCTTCCATGTGCTGTAATTATATTCGAGGCTAAGTCATGACGTCTCT TCTTCAATTTGTGACGTCCCCATAATTAAACTGTGCCTCCAACTATTCTGTGAGATATAT TTTGCTGGGGAAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P13194 |
Definition |
sp|P13194|PSAE_HORVU Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare |
Align length |
56 |
Score (bit) |
97.8 |
E-value |
3.0e-20 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955382|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_P05, 5' (554 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P13194|PSAE_HORVU Photosystem I reaction center subunit IV, c... 98 3e-20 sp|P12354|PSAE_SPIOL Photosystem I reaction center subunit IV, c... 96 2e-19 sp|Q41229|PSAEB_NICSY Photosystem I reaction center subunit IV B... 95 2e-19 sp|Q9S831|PSAE1_ARATH Photosystem I reaction center subunit IV A... 95 3e-19 sp|P12352|PSAE_CHLRE Photosystem I reaction center subunit IV, c... 94 3e-19 sp|Q9S714|PSAE2_ARATH Photosystem I reaction center subunit IV B... 94 4e-19 sp|Q41228|PSAEA_NICSY Photosystem I reaction center subunit IV A... 92 1e-18 sp|P58575|PSAE_ANASP Photosystem I reaction center subunit IV OS... 92 2e-18 sp|P0A423|PSAE_THEEB Photosystem I reaction center subunit IV OS... 92 2e-18 sp|P0A424|PSAE_SYNEN Photosystem I reaction center subunit IV OS... 92 2e-18 sp|P31090|PSAE_ANAVT Photosystem I reaction center subunit IV OS... 91 4e-18 sp|Q9WWP1|PSAE_NOSS8 Photosystem I reaction center subunit IV OS... 91 5e-18 sp|A0T0F3|PSAE_PHATR Photosystem I reaction center subunit IV OS... 87 5e-17 sp|Q9ZFU3|PSAE_MASLA Photosystem I reaction center subunit IV OS... 87 7e-17 sp|P49482|PSAE_ODOSI Photosystem I reaction center subunit IV OS... 86 9e-17 sp|P23809|PSAE_FREDI Photosystem I reaction center subunit IV OS... 86 1e-16 sp|O19924|PSAE_CYACA Photosystem I reaction center subunit IV OS... 86 2e-16 sp|O78515|PSAE_GUITH Photosystem I reaction center subunit IV OS... 85 2e-16 sp|P48114|PSAE_CYAPA Photosystem I reaction center subunit IV OS... 84 6e-16 sp|P23077|PSAE_SYNP6 Photosystem I reaction center subunit IV OS... 82 1e-15 sp|Q31NL7|PSAE_SYNE7 Photosystem I reaction center subunit IV OS... 82 1e-15 sp|Q117D3|PSAE_TRIEI Photosystem I reaction center subunit IV OS... 80 7e-15 sp|Q3AWF7|PSAE_SYNS9 Photosystem I reaction center subunit IV OS... 77 4e-14 sp|Q3AMB5|PSAE_SYNSC Photosystem I reaction center subunit IV OS... 77 6e-14 sp|Q7NFW6|PSAE_GLOVI Photosystem I reaction center subunit IV OS... 77 6e-14 sp|Q0ICP0|PSAE_SYNS3 Photosystem I reaction center subunit IV OS... 76 1e-13 sp|A5GR45|PSAE_SYNR3 Photosystem I reaction center subunit IV OS... 76 1e-13 sp|Q1XDG0|PSAE_PORYE Photosystem I reaction center subunit IV OS... 76 1e-13 sp|P69404|PSAE_PORUM Photosystem I reaction center subunit IV OS... 76 1e-13 sp|P69403|PSAE_PORPU Photosystem I reaction center subunit IV OS... 76 1e-13
>sp|P13194|PSAE_HORVU Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2 Length = 147
Score = 97.8 bits (242), Expect = 3e-20 Identities = 46/56 (82%), Positives = 49/56 (87%) Frame = +2
Query: 209 RGSKVKILRPESYWFNGVGTVVAVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 376 RG+KVKILR ESYW+NG G+VV VDQ P RYPVVVRF KVNYAGVSTNNYALDEI Sbjct: 87 RGTKVKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEI 142
>sp|P12354|PSAE_SPIOL Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1 Length = 125
Score = 95.5 bits (236), Expect = 2e-19 Identities = 45/56 (80%), Positives = 49/56 (87%) Frame = +2
Query: 209 RGSKVKILRPESYWFNGVGTVVAVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 376 RGSKV+I+R ESYW+ GVG+VVAVDQ P RYPVVVRF KVNYA VSTNNYALDEI Sbjct: 66 RGSKVRIMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEI 121
>sp|Q41229|PSAEB_NICSY Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1 Length = 143
Score = 95.1 bits (235), Expect = 2e-19 Identities = 43/56 (76%), Positives = 49/56 (87%) Frame = +2
Query: 209 RGSKVKILRPESYWFNGVGTVVAVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 376 RG+KV++LR ESYW+ GVG+VVAVDQ P RYPVVVRF KVNYA VSTNNYALDE+ Sbjct: 84 RGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEV 139
>sp|Q9S831|PSAE1_ARATH Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1 Length = 143
Score = 94.7 bits (234), Expect = 3e-19 Identities = 45/56 (80%), Positives = 48/56 (85%) Frame = +2
Query: 209 RGSKVKILRPESYWFNGVGTVVAVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 376 RGSKVKILR ESYWF VG+VVAVDQ P RYPVVVRF KVNYA +STNNYALDE+ Sbjct: 83 RGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEV 138
>sp|P12352|PSAE_CHLRE Photosystem I reaction center subunit IV, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAE PE=1 SV=1 Length = 97
Score = 94.4 bits (233), Expect = 3e-19 Identities = 47/58 (81%), Positives = 51/58 (87%) Frame = +2
Query: 209 RGSKVKILRPESYWFNGVGTVVAVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEICA 382 RGS VKILRPESYWFN VG VV+VDQ+ GVRYPVVVRFE NYAGV+TNNYALDE+ A Sbjct: 39 RGSLVKILRPESYWFNQVGKVVSVDQS-GVRYPVVVRFENQNYAGVTTNNYALDEVVA 95
>sp|Q9S714|PSAE2_ARATH Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1 Length = 145
Score = 94.0 bits (232), Expect = 4e-19 Identities = 44/56 (78%), Positives = 48/56 (85%) Frame = +2
Query: 209 RGSKVKILRPESYWFNGVGTVVAVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 376 RGSKVKILR ESYW+ VG+VVAVDQ P RYPVVVRF KVNYA +STNNYALDE+ Sbjct: 86 RGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEV 141
>sp|Q41228|PSAEA_NICSY Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1 Length = 141
Score = 92.4 bits (228), Expect = 1e-18 Identities = 43/56 (76%), Positives = 47/56 (83%) Frame = +2
Query: 209 RGSKVKILRPESYWFNGVGTVVAVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 376 RG+KV+ILR ESYW+ G G+VVA DQ P RYPVVVRF KVNYA VSTNNYALDEI Sbjct: 82 RGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEI 137
>sp|P58575|PSAE_ANASP Photosystem I reaction center subunit IV OS=Anabaena sp. (strain PCC 7120) GN=psaE PE=3 SV=1 Length = 70
Score = 92.0 bits (227), Expect = 2e-18 Identities = 41/59 (69%), Positives = 53/59 (89%) Frame = +2
Query: 209 RGSKVKILRPESYWFNGVGTVVAVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEICAV 385 RGSKV+ILRPESYWF VGTV +VDQ+ G++YPV+VRF+KVNYAG++TNN+A+DE+ V Sbjct: 4 RGSKVRILRPESYWFQDVGTVASVDQS-GIKYPVIVRFDKVNYAGINTNNFAVDELIEV 61
>sp|P0A423|PSAE_THEEB Photosystem I reaction center subunit IV OS=Thermosynechococcus elongatus (strain BP-1) GN=psaE PE=1 SV=2 Length = 76
Score = 91.7 bits (226), Expect = 2e-18 Identities = 43/63 (68%), Positives = 52/63 (82%), Gaps = 7/63 (11%) Frame = +2
Query: 209 RGSKVKILRPESYWFNGVGTVVAVDQAPGVRYPVVVRFEKVNY-------AGVSTNNYAL 367 RGSKVKILRPESYW+N VGTV +VDQ PGV+YPV+VRF+KVNY +GV+TNN+AL Sbjct: 4 RGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFAL 63
Query: 368 DEI 376 E+ Sbjct: 64 HEV 66
>sp|P0A424|PSAE_SYNEN Photosystem I reaction center subunit IV OS=Synechococcus elongatus naegeli GN=psaE PE=1 SV=2 Length = 76
Score = 91.7 bits (226), Expect = 2e-18 Identities = 43/63 (68%), Positives = 52/63 (82%), Gaps = 7/63 (11%) Frame = +2
Query: 209 RGSKVKILRPESYWFNGVGTVVAVDQAPGVRYPVVVRFEKVNY-------AGVSTNNYAL 367 RGSKVKILRPESYW+N VGTV +VDQ PGV+YPV+VRF+KVNY +GV+TNN+AL Sbjct: 4 RGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFAL 63
Query: 368 DEI 376 E+ Sbjct: 64 HEV 66
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7FHF6 |
Definition |
tr|B7FHF6|B7FHF6_MEDTR Putative uncharacterized protein OS=Medicago truncatula |
Align length |
56 |
Score (bit) |
99.8 |
E-value |
9.0e-20 |
Report |
|