DK955384 |
Clone id |
TST39A01NGRL0022_P07 |
Library |
TST39 |
Length |
593 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_P07. 5' end sequence. |
Accession |
DK955384 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2405Contig1 |
Sequence |
CACAAGCATCGTGGCTATGGCGGGTGCAGGGCCTCCACATTACGCGTCCTGGCCACCCCC AGCGGGACACAACCTGCCTCCTATGGGCGACATGGATGAGGTGAGGACAATCTTTGTGCT CGGGTTTCCTCCTGATGTGAAGGAGAGGGAGCTGCAAAATCTCCTGAGATGGTGGCCTGG CTATGAAGCTTCTCAGATGAACTTCAAGGGAGAGCAGCCCATGGGATTTGCCCTTTTCAG CTCAGCTGCAGCGGCCATGGCCGCTAAGGATGCACTTCAGAACTTGGTGTTTGATCATGA GACGAATTCTACTTTGCGGGCAGAGATGGCAAAGAAGAACCTTTATGTGAAACGCGGTGT CACCGGAATGGGCACAGAGACACCGCCATTCGACCAAAGTAAAAGGCTACGGACTGCTGG TGACTTTAGTACATCACACTATGCACCTCCTGGTGCCTTTGCTGCTCCACCTCCAAATAG CTGGGTGCCTCAAAGTTTCATGCCCCCAGCTGGCTCGTACGATCCTTATGCTGGTTACGG ACTGCCTCCTCTTCAAGCTGTTGCTCAACCTATTGTGGCACCTGTAGCTCCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9WVB0 |
Definition |
sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus |
Align length |
97 |
Score (bit) |
57.4 |
E-value |
5.0e-08 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PVL5 |
Definition |
tr|A7PVL5|A7PVL5_VITVI Chromosome chr9 scaffold_33, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
195 |
Score (bit) |
153.0 |
E-value |
6.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955384|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_P07, 5' (593 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PVL5|A7PVL5_VITVI Chromosome chr9 scaffold_33, whole genome... 153 6e-36 tr|Q9LU37|Q9LU37_ARATH Genomic DNA, chromosome 3, P1 clone: MXL8... 152 2e-35 tr|Q9ASW4|Q9ASW4_ARATH At3g21211 (Putative uncharacterized prote... 152 2e-35 tr|A9TLS8|A9TLS8_PHYPA Predicted protein (Fragment) OS=Physcomit... 149 2e-34 tr|Q8L5G3|Q8L5G3_CICAR Proline rich protein 3 (Fragment) OS=Cice... 146 8e-34 tr|B6TSF8|B6TSF8_MAIZE Cell wall integrity protein scw1 OS=Zea m... 142 1e-32 tr|B6TDW6|B6TDW6_MAIZE Cell wall integrity protein scw1 OS=Zea m... 142 1e-32 tr|Q6YW21|Q6YW21_ORYSJ Os08g0249400 protein OS=Oryza sativa subs... 136 1e-30 tr|A8J3Y3|A8J3Y3_CHLRE Predicted protein (Fragment) OS=Chlamydom... 89 2e-16 tr|A7PLE9|A7PLE9_VITVI Chromosome chr7 scaffold_20, whole genome... 75 3e-12 tr|A5BZA8|A5BZA8_VITVI Putative uncharacterized protein OS=Vitis... 75 3e-12 tr|O48531|O48531_ARATH Putative RNA-binding protein OS=Arabidops... 74 8e-12 tr|Q56WS1|Q56WS1_ARATH Putative RNA-binding protein OS=Arabidops... 72 3e-11 tr|Q0WQM7|Q0WQM7_ARATH Putative RNA-binding protein OS=Arabidops... 72 3e-11 tr|B3H7G0|B3H7G0_ARATH Uncharacterized protein At2g42240.3 OS=Ar... 72 3e-11 tr|Q84WY2|Q84WY2_ARATH Putative uncharacterized protein At2g4224... 70 7e-11 tr|Q84WY3|Q84WY3_ARATH Putative uncharacterized protein At2g4224... 70 1e-10 tr|Q84WY1|Q84WY1_ARATH Putative uncharacterized protein At2g4224... 70 1e-10 tr|Q653F9|Q653F9_ORYSJ Os06g0687500 protein OS=Oryza sativa subs... 68 3e-10 tr|B8B1S9|B8B1S9_ORYSI Putative uncharacterized protein OS=Oryza... 68 3e-10 tr|B4G1S7|B4G1S7_MAIZE Putative uncharacterized protein OS=Zea m... 67 6e-10 tr|A2YT00|A2YT00_ORYSI Putative uncharacterized protein OS=Oryza... 66 1e-09 tr|B8B8Q9|B8B8Q9_ORYSI Putative uncharacterized protein OS=Oryza... 66 2e-09 tr|A7P227|A7P227_VITVI Chromosome chr19 scaffold_4, whole genome... 66 2e-09 tr|B8LQ91|B8LQ91_PICSI Putative uncharacterized protein OS=Picea... 64 8e-09 tr|B4FLP2|B4FLP2_MAIZE Putative uncharacterized protein OS=Zea m... 62 2e-08 tr|B4FEZ0|B4FEZ0_MAIZE Putative uncharacterized protein OS=Zea m... 62 2e-08 tr|Q6PAA8|Q6PAA8_XENLA MGC68512 protein OS=Xenopus laevis GN=rbp... 61 4e-08 tr|Q7ZUL7|Q7ZUL7_DANRE RNA binding protein OS=Danio rerio GN=rbp... 60 1e-07 tr|B5X2K1|B5X2K1_SALSA RNA-binding protein with multiple splicin... 59 2e-07
>tr|A7PVL5|A7PVL5_VITVI Chromosome chr9 scaffold_33, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025269001 PE=4 SV=1 Length = 299
Score = 153 bits (387), Expect = 6e-36 Identities = 89/195 (45%), Positives = 107/195 (54%), Gaps = 21/195 (10%) Frame = +2
Query: 17 MAGAG-PPHYASWPP------------PAGHNLPPM-------GDMDEVRTIFVLGFPPD 136 MAGAG P++ WPP PA + PP+ + DEVRTIF+ G P D Sbjct: 1 MAGAGIHPYHQQWPPAPAPQPSAPGAPPAPAHPPPILVENPNRPNSDEVRTIFISGLPED 60
Query: 137 VKERELQNLLRWWPGYEASQMNFKGEQPMGXXXXXXXXXXXXXXXXXQNLVFDHETNSTL 316 VKERELQNLLRW PGYEASQ+NFKGE PMG Q +VFD E+ S L Sbjct: 61 VKERELQNLLRWLPGYEASQVNFKGEHPMGFALFSTPQLAVAAKDALQEMVFDAESKSVL 120
Query: 317 RAEMAKKNLYVKRGVTGMGTETPPFDQSKRLRTAGDFSTSHYXXXXXXXXXXXNSWVPQS 496 EMAKKNL+VKRG+ ++ +DQSKRLRT GD++ + Y W P Sbjct: 121 HTEMAKKNLFVKRGIV---ADSSAYDQSKRLRTGGDYTHTGYSSPSPFHPPPAPVWGPHG 177
Query: 497 FMPPA-GSYDPYAGY 538 +M PA YDPY Y Sbjct: 178 YMAPAPPPYDPYGAY 192
>tr|Q9LU37|Q9LU37_ARATH Genomic DNA, chromosome 3, P1 clone: MXL8 OS=Arabidopsis thaliana PE=4 SV=1 Length = 317
Score = 152 bits (383), Expect = 2e-35 Identities = 87/185 (47%), Positives = 106/185 (57%), Gaps = 10/185 (5%) Frame = +2
Query: 14 AMAGAGPPHYASWPPPAGHNLPPMGDM---------DEVRTIFVLGFPPDVKERELQNLL 166 A++ A PPH PPP H+ PP + DE+RTIF+ G P DVKEREL NLL Sbjct: 24 AVSSAAPPH----PPPIHHHPPPPPVLVDNHNRPPYDELRTIFIAGLPDDVKERELLNLL 79
Query: 167 RWWPGYEASQMNFKGEQPMGXXXXXXXXXXXXXXXXXQNLVFDHETNSTLRAEMAKKNLY 346 RW PGYEASQ+NFKGE+PMG Q++VFD E+ S + EMAKKNL+ Sbjct: 80 RWLPGYEASQVNFKGEKPMGFALFSTAQFAMAAKDTLQHMVFDAESKSVIHTEMAKKNLF 139
Query: 347 VKRGVTGMGTETPPFDQSKRLRTAGDFSTSHYXXXXXXXXXXXNSWVPQSFMPPA-GSYD 523 VKRG+ G ++ +DQSKRLRT GD + S Y P +M PA YD Sbjct: 140 VKRGIVG---DSNAYDQSKRLRTGGDCTHSVYSPSPFHPPPPPVWGPPHGYMAPAPPPYD 196
Query: 524 PYAGY 538 PYAGY Sbjct: 197 PYAGY 201
>tr|Q9ASW4|Q9ASW4_ARATH At3g21211 (Putative uncharacterized protein At3g21215) (At3g21211/At3g21211) OS=Arabidopsis thaliana GN=At3g21215 PE=2 SV=1 Length = 339
Score = 152 bits (383), Expect = 2e-35 Identities = 87/185 (47%), Positives = 106/185 (57%), Gaps = 10/185 (5%) Frame = +2
Query: 14 AMAGAGPPHYASWPPPAGHNLPPMGDM---------DEVRTIFVLGFPPDVKERELQNLL 166 A++ A PPH PPP H+ PP + DE+RTIF+ G P DVKEREL NLL Sbjct: 24 AVSSAAPPH----PPPIHHHPPPPPVLVDNHNRPPYDELRTIFIAGLPDDVKERELLNLL 79
Query: 167 RWWPGYEASQMNFKGEQPMGXXXXXXXXXXXXXXXXXQNLVFDHETNSTLRAEMAKKNLY 346 RW PGYEASQ+NFKGE+PMG Q++VFD E+ S + EMAKKNL+ Sbjct: 80 RWLPGYEASQVNFKGEKPMGFALFSTAQFAMAAKDTLQHMVFDAESKSVIHTEMAKKNLF 139
Query: 347 VKRGVTGMGTETPPFDQSKRLRTAGDFSTSHYXXXXXXXXXXXNSWVPQSFMPPA-GSYD 523 VKRG+ G ++ +DQSKRLRT GD + S Y P +M PA YD Sbjct: 140 VKRGIVG---DSNAYDQSKRLRTGGDCTHSVYSPSPFHPPPPPVWGPPHGYMAPAPPPYD 196
Query: 524 PYAGY 538 PYAGY Sbjct: 197 PYAGY 201
>tr|A9TLS8|A9TLS8_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_147451 PE=4 SV=1 Length = 268
Score = 149 bits (375), Expect = 2e-34 Identities = 83/155 (53%), Positives = 94/155 (60%), Gaps = 7/155 (4%) Frame = +2
Query: 95 DEVRTIFVLGFPPDVKERELQNLLRWWPGYEASQMNFKGEQPMGXXXXXXXXXXXXXXXX 274 ++VRTIFVLGFP DVKERELQNLLRWWPGYEASQMNFK +QPMG Sbjct: 1 EQVRTIFVLGFPSDVKERELQNLLRWWPGYEASQMNFKCDQPMGFALFSTVAMAMAARDA 60
Query: 275 XQNLVFDHETNSTLRAEMAKKNLYVKRGVTGMGTETPPFDQSKRLRT-AGDFSTSHY--- 442 QNLVFD +TNS LRAEMAKKNL+VKRGV G FD SKR+RT GD+S + Y Sbjct: 61 LQNLVFDADTNSVLRAEMAKKNLFVKRGVA--GDPCISFDGSKRMRTGGGDYSPAPYSAP 118
Query: 443 ---XXXXXXXXXXXNSWVPQSFMPPAGSYDPYAGY 538 +W PQ++ P YD Y Y Sbjct: 119 YPSTYLTQPMTSPTPAWAPQTYGLPQPQYDQYGAY 153
>tr|Q8L5G3|Q8L5G3_CICAR Proline rich protein 3 (Fragment) OS=Cicer arietinum GN=prp3 PE=2 SV=1 Length = 284
Score = 146 bits (369), Expect = 8e-34 Identities = 75/150 (50%), Positives = 93/150 (62%), Gaps = 2/150 (1%) Frame = +2
Query: 95 DEVRTIFVLGFPPDVKERELQNLLRWWPGYEASQMNFKGEQPMGXXXXXXXXXXXXXXXX 274 +EVRTIF+ G P DVKERE+QNLLRW PG+EASQ+NFK E+PMG Sbjct: 2 EEVRTIFITGLPEDVKEREIQNLLRWLPGFEASQLNFKAEKPMGFALFSSPHQAIAAKDI 61
Query: 275 XQNLVFDHETNSTLRAEMAKKNLYVKRGVTGMGTETPPFDQSKRLRTAGDFSTSHYXXXX 454 Q+++FD ++ S L EMAKKNL+VKRG+ G + FDQSKRLRTAGD++ + Y Sbjct: 62 LQDMLFDPDSKSVLHTEMAKKNLFVKRGI---GADAVAFDQSKRLRTAGDYTHTGYVTPS 118
Query: 455 XXXXXXXNSWVPQSFM--PPAGSYDPYAGY 538 W P +M PP YDPYAGY Sbjct: 119 PFHPPPPPVWGPHGYMAPPPPPPYDPYAGY 148
>tr|B6TSF8|B6TSF8_MAIZE Cell wall integrity protein scw1 OS=Zea mays PE=2 SV=1 Length = 321
Score = 142 bits (359), Expect = 1e-32 Identities = 83/193 (43%), Positives = 98/193 (50%), Gaps = 19/193 (9%) Frame = +2
Query: 17 MAGAGPPHYASWPPPAGHNLPPMGDM-------------------DEVRTIFVLGFPPDV 139 MAGAG + WPP A PP DEVRTIF+ G P DV Sbjct: 1 MAGAGIHPFQQWPPAAAAPPPPGAAASVAVPPPPPVPGAPGTVGPDEVRTIFITGLPADV 60
Query: 140 KERELQNLLRWWPGYEASQMNFKGEQPMGXXXXXXXXXXXXXXXXXQNLVFDHETNSTLR 319 KEREL NLLRW PG+EASQ+NFKG+QPMG Q++VFD ET L Sbjct: 61 KERELHNLLRWLPGFEASQINFKGDQPMGFALFSTAHQAIAAKTALQDMVFDAETKVALH 120
Query: 320 AEMAKKNLYVKRGVTGMGTETPPFDQSKRLRTAGDFSTSHYXXXXXXXXXXXNSWVPQSF 499 EMAKKNL+VKR V G + DQSKRLRT GD++ S Y + W + Sbjct: 121 TEMAKKNLFVKRCV---GIDANAVDQSKRLRTGGDYTHSPYAPPFHPPPPAVSMWGTPGY 177
Query: 500 MPPAGSYDPYAGY 538 + Y+PYA Y Sbjct: 178 ITAPPPYNPYAAY 190
>tr|B6TDW6|B6TDW6_MAIZE Cell wall integrity protein scw1 OS=Zea mays PE=2 SV=1 Length = 321
Score = 142 bits (359), Expect = 1e-32 Identities = 83/193 (43%), Positives = 98/193 (50%), Gaps = 19/193 (9%) Frame = +2
Query: 17 MAGAGPPHYASWPPPAGHNLPPMGDM-------------------DEVRTIFVLGFPPDV 139 MAGAG + WPP A PP DEVRTIF+ G P DV Sbjct: 1 MAGAGIHPFQQWPPTAAAPPPPGAAASVAVPPPPPVPGAPGTVGPDEVRTIFITGLPADV 60
Query: 140 KERELQNLLRWWPGYEASQMNFKGEQPMGXXXXXXXXXXXXXXXXXQNLVFDHETNSTLR 319 KEREL NLLRW PG+EASQ+NFKG+QPMG Q++VFD ET L Sbjct: 61 KERELHNLLRWLPGFEASQINFKGDQPMGFALFSTAHQAIAAKTALQDMVFDAETKVALH 120
Query: 320 AEMAKKNLYVKRGVTGMGTETPPFDQSKRLRTAGDFSTSHYXXXXXXXXXXXNSWVPQSF 499 EMAKKNL+VKR V G + DQSKRLRT GD++ S Y + W + Sbjct: 121 TEMAKKNLFVKRCV---GIDANAVDQSKRLRTGGDYTHSPYAPPFHPPPPAVSMWGTPGY 177
Query: 500 MPPAGSYDPYAGY 538 + Y+PYA Y Sbjct: 178 ITAPPPYNPYAAY 190
>tr|Q6YW21|Q6YW21_ORYSJ Os08g0249400 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0012K14.14 PE=4 SV=1 Length = 315
Score = 136 bits (342), Expect = 1e-30 Identities = 83/194 (42%), Positives = 99/194 (51%), Gaps = 19/194 (9%) Frame = +2
Query: 20 AGAGPPHYASWPPPAGHNLPPMGDM------------------DEVRTIFVLGFPPDVKE 145 AGA P A PPP +P D DEVRTIF+ G P DVKE Sbjct: 16 AGAPAPAAAVPPPPPVPGVPGAPDAAAAAAAAAAAAAAAAARPDEVRTIFITGLPTDVKE 75
Query: 146 RELQNLLRWWPGYEASQMNFKGEQPMGXXXXXXXXXXXXXXXXXQNLVFDHETNSTLRAE 325 REL NLLRW PG+EASQ+NFKG+QPMG Q+L+FD ET + L E Sbjct: 76 RELHNLLRWLPGFEASQINFKGDQPMGFALFSSAHHAIAAKAALQDLIFDAETKTALHTE 135
Query: 326 MAKKNLYVKRGVTGMGTETPPFDQSKRLRTAGDFSTSHYXXXXXXXXXXXNS-WVPQSFM 502 MAKKNL+VKRGV G + DQSKRLRT GD++ S Y S W ++ Sbjct: 136 MAKKNLFVKRGV---GNDANAMDQSKRLRTGGDYTHSPYAAPPYHPPPPAVSMWGTPGYI 192
Query: 503 PPAGSYDPYAGYGL 544 Y+ YA Y + Sbjct: 193 AAPPPYNHYAAYSV 206
>tr|A8J3Y3|A8J3Y3_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_104778 PE=4 SV=1 Length = 269
Score = 88.6 bits (218), Expect = 2e-16 Identities = 48/90 (53%), Positives = 57/90 (63%) Frame = +2
Query: 83 MGDMDEVRTIFVLGFPPDVKERELQNLLRWWPGYEASQMNFKGEQPMGXXXXXXXXXXXX 262 MG DEVRT+FV GFP DVKEREL NLLR+ PGYEASQMN+ G Sbjct: 1 MGATDEVRTVFVTGFPIDVKERELNNLLRFLPGYEASQMNYGKGSAQGFALFTSGAHARA 60
Query: 263 XXXXXQNLVFDHETNSTLRAEMAKKNLYVK 352 Q++ FD NS+LRAEMA+KN+Y+K Sbjct: 61 ACDQLQHVRFDE--NSSLRAEMARKNMYIK 88
>tr|A7PLE9|A7PLE9_VITVI Chromosome chr7 scaffold_20, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019542001 PE=4 SV=1 Length = 336
Score = 75.1 bits (183), Expect = 3e-12 Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Frame = +2
Query: 32 PPHYASWPPPAGHNLPPMGDMDEVRTIFVLGFPPDVKERELQNLLRWWPGYEASQMN--F 205 PP +AS+ PP L P +DEVRT+F+ G P DVK RE+ NL R +PGYE+S + Sbjct: 61 PPPFASYAPP----LYPQTSVDEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPS 116
Query: 206 KGEQPMGXXXXXXXXXXXXXXXXXQNLVFDHETNSTLRAEMAKKNLYVKRGVTGMGTETP 385 + QP +VFD E STL ++AK N KR + E P Sbjct: 117 QNSQPFAFAVFLDQQSAIAAMHALNGMVFDLEKGSTLYIDLAKSNSRSKR--SRADDERP 174
Query: 386 PFDQSKRLRTAGDFS 430 D K+++ + FS Sbjct: 175 GLD--KKVKGSAGFS 187
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