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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955387
Clone id TST39A01NGRL0022_P10
Library
Length 574
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_P10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGCTGTTTGTGACATGATACATCTCTTTTAGCAACGTCTTCACGGCGCAACAATCATGAA
AAGCAGGTATCGTCACTTTGGTGGCGAGGCATCGCAGCTTGCATCTTGTACGGTCGTCCT
TATCGCTAACTGTACAGCTTCCTCTAGTGCGACTCCTCCTGCCTAGAAATTCGCTGCACG
CACAACAGATATGTTCATGGAATTGCAACCATCTGTACACTTGATTTGTTGGATGGCCTG
CATTGAAAGTTTGAGAATTATAGGAGAGCTGAACATACAGGAAGCAGCAGATGTTTTTTC
TCAGGTTTGATCTCTTGTTGCTCCATCGGGGTGTCCTTGCATCACCCCACTGCAGAGATA
GAGCACATTTGTCATGGTCATTTTTAATTAGTTGGTGCCATTTATAGCCAAGAAGTTTCT
CCTGTAATTAGAAGTTGCAACCTTCAGACCTTGGGTTGCCAATATGGTGGCAAACCACTC
TACATAATCTAACAGAGACAATGGCAGAAATGAACAGCAGGATGAATCATTCTCAATGTG
TTCCCCTGCCCACATTGTGTCTACAAATTCCTTC
■■Homology search results ■■ -
sp_hit_id P23423
Definition sp|P23423|ENV_VILV2 Envelope glycoprotein gp160 OS=Maedi visna virus (strain 1514 / clone LV1-1KS2)
Align length 77
Score (bit) 34.7
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955387|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P10, 5'
         (574 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23423|ENV_VILV2 Envelope glycoprotein gp160 OS=Maedi visna v...    35   0.35 
sp|P23422|ENV_VILV1 Envelope glycoprotein gp160 OS=Maedi visna v...    35   0.35 
sp|P35954|ENV_VILVK Envelope glycoprotein gp160 OS=Maedi visna v...    32   2.3  
sp|P03379|ENV_VILV Envelope glycoprotein gp160 OS=Maedi visna vi...    32   3.0  

>sp|P23423|ENV_VILV2 Envelope glycoprotein gp160 OS=Maedi visna
           virus (strain 1514 / clone LV1-1KS2) GN=env PE=3 SV=1
          Length = 991

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
 Frame = -1

Query: 319 NKRSNLRKNICCFL------------YVQLSYNSQTFNAGHPTNQVYRWLQFHEHICCAC 176
           N  SN  + IC F             Y + S+N      GHP  QV+R+L   EH+   C
Sbjct: 403 NISSNPERGICDFTGELWIGGDKFPYYYKPSWNCSQNWTGHPVWQVFRYLDMTEHMTSRC 462

Query: 175 SEFLGRRSRTRGSCTVS 125
            +   R + T G+ T++
Sbjct: 463 IQRPERHNITVGNGTIT 479


>sp|P23422|ENV_VILV1 Envelope glycoprotein gp160 OS=Maedi visna
           virus (strain 1514 / clone LV1-1KS1) GN=env PE=3 SV=1
          Length = 989

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
 Frame = -1

Query: 319 NKRSNLRKNICCFL------------YVQLSYNSQTFNAGHPTNQVYRWLQFHEHICCAC 176
           N  SN  + IC F             Y + S+N      GHP  QV+R+L   EH+   C
Sbjct: 403 NISSNPERGICDFTGELWIGGDKFPYYYKPSWNCSQNWTGHPVWQVFRYLDMTEHMTSRC 462

Query: 175 SEFLGRRSRTRGSCTVS 125
            +   R + T G+ T++
Sbjct: 463 IQRPERHNITVGNGTIT 479


>sp|P35954|ENV_VILVK Envelope glycoprotein gp160 OS=Maedi visna
           virus (strain KV1772) GN=env PE=1 SV=1
          Length = 983

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
 Frame = -1

Query: 319 NKRSNLRKNICCFL------------YVQLSYNSQTFNAGHPTNQVYRWLQFHEHICCAC 176
           N  SN  + IC F             Y   S+N      GHP   V+R+L   EH+   C
Sbjct: 403 NISSNPERGICNFTGELWIGGDKFPYYYTPSWNCSQNWTGHPVWHVFRYLDMTEHMTSRC 462

Query: 175 SEFLGRRSRTRGSCTVS 125
            +   R + T G+ T++
Sbjct: 463 IQRPKRHNITVGNGTIT 479


>sp|P03379|ENV_VILV Envelope glycoprotein gp160 OS=Maedi visna virus
           (strain 1514) GN=env PE=1 SV=1
          Length = 982

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 277 YVQLSYNSQTFNAGHPTNQVYRWLQFHEHICCACSEFLGRRSRTRGSCTVS 125
           Y + S+N      GHP   V+R+L   EH+   C +   R + T G+ T++
Sbjct: 429 YYKPSWNCSQNWTGHPVWHVFRYLDMTEHMTSRCIQRPKRHNITVGNGTIT 479
tr_hit_id A4ZHL7
Definition tr|A4ZHL7|A4ZHL7_9RETR Surface envelope glycoprotein (Fragment) OS=Small ruminant lentivirus
Align length 77
Score (bit) 33.5
E-value 8.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955387|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P10, 5'
         (574 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4ZHL7|A4ZHL7_9RETR Surface envelope glycoprotein (Fragment) ...    33   8.6  

>tr|A4ZHL7|A4ZHL7_9RETR Surface envelope glycoprotein (Fragment)
           OS=Small ruminant lentivirus GN=env PE=4 SV=1
          Length = 661

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
 Frame = -1

Query: 319 NKRSNLRKNICCFL------------YVQLSYNSQTFNAGHPTNQVYRWLQFHEHICCAC 176
           N  S+  K IC F             Y + S+N      GHP   VYR+L   EH+   C
Sbjct: 403 NISSDPEKGICNFTKELWIGGDRFSYYYKPSWNCSQNWTGHPVWHVYRYLDMTEHMTSRC 462

Query: 175 SEFLGRRSRTRGSCTVS 125
            +   R + T G+ T++
Sbjct: 463 VQRPERHNITVGNGTIT 479