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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955388
Clone id TST39A01NGRL0022_P11
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_P11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGCTCCTATGCACTTTCCTGTGGTGTCAAATTTGCAAGAACATCCAGTTGGCCCTCATA
ATTTGCAGGAAAAAGGTCCAGTTGTTATTGAAGAAGACCGAGGGCTCAAGGTTGCTGGGA
TTTCTGAGGTGCAAATAGATGTAGGAAATAAAGTTGAATCTTTGTCATGCAATTTTTATG
AAGGTAGAATTGTTCACTTACAAAAGGAGGAAGAAATAGGTTTAGGGTGTGAAGTTGAGA
TGAAGAATCCAGGAGAGAATGATGCTGAGACATTCGTCACTCCTGCCAAGCAAGTTGACG
AGCCTAAAGGTGTGTCTGGCCAGGCAGATAGTGGTTCGAGCACAGGAAGAAAGAAACGTA
GCAGGTGGGAGCCTCGGGATGGTGAGGGGGAGACTACAGAGAATACTGAGTCAAGTGGTA
AACGACGTTCACGCTGGGCTGCTGAGGAGCCCAAACAAATTCAGTTACCAGACCTGTTTA
AGGAGCTCA
■■Homology search results ■■ -
sp_hit_id Q4VZL0
Definition sp|Q4VZL0|YCF1_CUCSA Putative membrane protein ycf1 OS=Cucumis sativus
Align length 95
Score (bit) 32.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955388|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P11, 5'
         (489 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4VZL0|YCF1_CUCSA Putative membrane protein ycf1 OS=Cucumis s...    32   1.2  
sp|O66949|PUR2_AQUAE Phosphoribosylamine--glycine ligase OS=Aqui...    30   5.8  
sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS...    30   5.8  
sp|P54674|PI3K2_DICDI Phosphatidylinositol 3-kinase 2 OS=Dictyos...    30   7.6  
sp|Q9UKN1|MUC12_HUMAN Mucin-12 OS=Homo sapiens GN=MUC12 PE=1 SV=2      30   7.6  
sp|Q09YI1|CTTB2_SHEEP Cortactin-binding protein 2 OS=Ovis aries ...    29   9.9  

>sp|Q4VZL0|YCF1_CUCSA Putative membrane protein ycf1 OS=Cucumis
           sativus GN=ycf1-A PE=3 SV=2
          Length = 1879

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 29/95 (30%), Positives = 36/95 (37%)
 Frame = -3

Query: 346 PVLEPLSAWPDTPLGSSTCLAGVTNVSASFSPGFFISTSHPKPISSSFCK*TILPS*KLH 167
           P   P S    TP  +ST        S S S     STS    I +S    T +P+    
Sbjct: 605 PTSTPTSTPTSTPTSTSTSTPASIPASTSTSIPASTSTSTSTSIPASTSTSTSIPA---- 660

Query: 166 DKDSTLFPTSICTSEIPATLSPRSSSITTGPFSCK 62
              ST  P S  TS   +T  P S+S +T     K
Sbjct: 661 -STSTSIPASTSTSTSTSTSIPASTSTSTNEIKSK 694


>sp|O66949|PUR2_AQUAE Phosphoribosylamine--glycine ligase OS=Aquifex
           aeolicus GN=purD PE=1 SV=1
          Length = 424

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 63  LQEKGPVVIEEDRGLKVAGISEVQIDVGNKVESLSCNFYEGRIVHLQKEEEIGL 224
           + ++GP V+E +  L       + + V N       NFYEG+ VH++++E   L
Sbjct: 274 ITKEGPKVLEFNVRLGDPEAQPILMRVKNDFLETLLNFYEGKDVHIKEDERYAL 327


>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like
            OS=Danio rerio GN=ercc6l PE=1 SV=1
          Length = 1451

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 28/78 (35%), Positives = 38/78 (48%)
 Frame = +3

Query: 81   VVIEEDRGLKVAGISEVQIDVGNKVESLSCNFYEGRIVHLQKEEEIGLGCEVEMKNPGEN 260
            V+ +ED G KV   SEV++ VG +VE ++    +   V +  EE  G+G EVE       
Sbjct: 809  VIGDEDLGDKVIS-SEVEV-VGEEVEVVAEEVEDAGEVEVVSEEVEGVGVEVEDVGVEVE 866

Query: 261  DAETFVTPAKQVDEPKGV 314
            DA   V  A    E  GV
Sbjct: 867  DAGVEVEDAGVEVEDAGV 884


>sp|P54674|PI3K2_DICDI Phosphatidylinositol 3-kinase 2
           OS=Dictyostelium discoideum GN=pikB PE=2 SV=2
          Length = 1857

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 27/84 (32%), Positives = 41/84 (48%)
 Frame = -3

Query: 331 LSAWPDTPLGSSTCLAGVTNVSASFSPGFFISTSHPKPISSSFCK*TILPS*KLHDKDST 152
           +SA P     S   +   +NVS+S +    +S+S P   SSS    T++P  +L   +ST
Sbjct: 340 ISAVPKKVSSSKLLIPPSSNVSSSSNITLSLSSSSPSSSSSSSTS-TVVPIVQLSSSNST 398

Query: 151 LFPTSICTSEIPATLSPRSSSITT 80
             P    ++ +P T  PR S  TT
Sbjct: 399 NSP----STSLPTT--PRLSQPTT 416


>sp|Q9UKN1|MUC12_HUMAN Mucin-12 OS=Homo sapiens GN=MUC12 PE=1 SV=2
          Length = 5478

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = -3

Query: 301 SSTCLAGVTNVSASFSPGFFISTSHPKPISSSFCK*TILPS*K----LHDKDSTLF--PT 140
           SS      T + A  +P   +  S P PISS   + T LP       L +K +T +  P 
Sbjct: 585 SSPDAMATTVLPAGSTPSVLVGDSTPSPISSGSMETTALPGSTTKPGLSEKSTTFYSSPR 644

Query: 139 SICTSEIPATLS 104
           S  T+ +PA+++
Sbjct: 645 SPDTTHLPASMT 656


>sp|Q09YI1|CTTB2_SHEEP Cortactin-binding protein 2 OS=Ovis aries
           GN=CTTNBP2 PE=3 SV=1
          Length = 1641

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = -3

Query: 349 LPVLEPLSAWPDTPLGSSTCLAGVTNVSASFSPGFFISTSHPKPISSSFCK*TILPS*KL 170
           LP+  P+     +PL S++        +AS  PG     SH   I SS        + ++
Sbjct: 322 LPLTVPVKPAAGSPLVSASAKGNACASAASVRPGIERQVSHGDLIGSSLPTVPPPSTDRI 381

Query: 169 HDKDSTLFPTSICTSE---IPATLSPRSSSITTGP 74
            +   +   T   TS    +P+T+SP S    T P
Sbjct: 382 EENGPSTGSTPDLTSSPTALPSTVSPASGHTPTPP 416
tr_hit_id A9SK99
Definition tr|A9SK99|A9SK99_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 28
Score (bit) 39.3
E-value 0.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955388|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P11, 5'
         (489 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SK99|A9SK99_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.100
tr|A9SYU4|A9SYU4_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.38 
tr|Q6C4T1|Q6C4T1_YARLI YALI0E23969p OS=Yarrowia lipolytica GN=YA...    36   0.85 
tr|Q755Z5|Q755Z5_ASHGO AER372Cp OS=Ashbya gossypii GN=AER372C PE...    35   2.5  
tr|B8LRH8|B8LRH8_PICSI Putative uncharacterized protein OS=Picea...    34   3.2  
tr|B6KXK5|B6KXK5_BRAFL Putative uncharacterized protein OS=Branc...    34   3.2  
tr|B8M7R2|B8M7R2_9EURO Putative uncharacterized protein OS=Talar...    34   3.2  
tr|Q4T670|Q4T670_TETNG Chromosome undetermined SCAF8892, whole g...    34   4.2  
tr|Q1LXB6|Q1LXB6_DANRE Novel protein similar to human and mouse ...    34   4.2  
tr|Q9LU44|Q9LU44_ARATH Similarity to transcription or splicing f...    34   4.2  
tr|Q94KA0|Q94KA0_ARATH Putative uncharacterized protein At5g5130...    34   4.2  
tr|B1GAS7|B1GAS7_9BURK Aldehyde oxidase and xanthine dehydrogena...    33   5.5  
tr|B6MRD8|B6MRD8_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|B2JS32|B2JS32_BURP8 Aldehyde oxidase and xanthine dehydrogena...    33   7.2  
tr|A9TUP4|A9TUP4_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.2  
tr|B6KVU9|B6KVU9_TOXGO Putative uncharacterized protein OS=Toxop...    33   7.2  
tr|A2EEA0|A2EEA0_TRIVA Putative uncharacterized protein OS=Trich...    33   7.2  
tr|B6K9P2|B6K9P2_TOXGO Putative uncharacterized protein OS=Toxop...    27   8.0  
tr|A9SEK2|A9SEK2_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.3  
tr|A7P1Z2|A7P1Z2_VITVI Chromosome chr19 scaffold_4, whole genome...    33   9.3  
tr|B6LKD6|B6LKD6_BRAFL Putative uncharacterized protein (Fragmen...    33   9.3  
tr|A7EQ99|A7EQ99_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.3  

>tr|A9SK99|A9SK99_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185832 PE=4 SV=1
          Length = 677

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 20/28 (71%), Positives = 21/28 (75%), Gaps = 5/28 (17%)
 Frame = +3

Query: 420 KRRSRWAAEEPK-----QIQLPDLFKEL 488
           KR+SRWAAEEPK     QIQLPD  KEL
Sbjct: 104 KRKSRWAAEEPKLPLLGQIQLPDFVKEL 131


>tr|A9SYU4|A9SYU4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_189930 PE=4 SV=1
          Length = 774

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 19/28 (67%), Positives = 20/28 (71%), Gaps = 5/28 (17%)
 Frame = +3

Query: 420 KRRSRWAAEEPK-----QIQLPDLFKEL 488
           KR+SRWAAEEP      QIQLPD  KEL
Sbjct: 103 KRKSRWAAEEPNLPLLGQIQLPDFVKEL 130


>tr|Q6C4T1|Q6C4T1_YARLI YALI0E23969p OS=Yarrowia lipolytica
           GN=YALI0E23969g PE=4 SV=1
          Length = 371

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 30/82 (36%), Positives = 37/82 (45%)
 Frame = -3

Query: 328 SAWPDTPLGSSTCLAGVTNVSASFSPGFFISTSHPKPISSSFCK*TILPS*KLHDKDSTL 149
           +A    P  S +  AG    S+S SPGFF ST      SSSF + T   S       ST 
Sbjct: 85  NATSSIPTNSGSSQAG--GFSSSSSPGFFSSTEISSTESSSFAESTSSESSSRFVPSSTS 142

Query: 148 FPTSICTSEIPATLSPRSSSIT 83
             +   +SEI  + S  SSS T
Sbjct: 143 TSSESSSSEISTSTSSESSSTT 164


>tr|Q755Z5|Q755Z5_ASHGO AER372Cp OS=Ashbya gossypii GN=AER372C PE=4
           SV=1
          Length = 436

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 29/91 (31%), Positives = 45/91 (49%)
 Frame = -3

Query: 346 PVLEPLSAWPDTPLGSSTCLAGVTNVSASFSPGFFISTSHPKPISSSFCK*TILPS*KLH 167
           P L P S+   TP+ SST  + V + S+  +P    + S   P SSS    +  P     
Sbjct: 69  PTLSP-SSTRSTPVSSSTPTSSVVSSSSYSAPSSSSAWSSSAPSSSSAPSSSSAPPSTTS 127

Query: 166 DKDSTLFPTSICTSEIPATLSPRSSSITTGP 74
            K +TL P+S  +SE+ +T S  + S ++ P
Sbjct: 128 AKPTTLKPSS--SSEVSSTKSSAAPSSSSAP 156


>tr|B8LRH8|B8LRH8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 970

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 366 WEPRDXXXXXXXXXXXXXKRRSRWAAEEPK-----QIQLPDLFKEL 488
           W+P               K+RSRWA E+PK     QI+LPD  K L
Sbjct: 112 WDPMPEEGGVANEGECSGKKRSRWATEDPKISMLGQIKLPDFVKGL 157


>tr|B6KXK5|B6KXK5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_63628 PE=4 SV=1
          Length = 776

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
 Frame = +3

Query: 24  VSNLQEHPVGPHNLQE----KGPVVIEEDRGLKVAGISEVQIDVGNKVESLSCNFYEGRI 191
           VS  + +P G  ++ E    +   V++ED   K+  + E+Q DV    E +  N  EG  
Sbjct: 664 VSQAESNPDGKDDISESSNEENVTVVQEDEKTKIPEVVEIQHDVDIACEQIRYNAEEGSA 723

Query: 192 VH----LQKEEEIGLGCEVEMKNPGENDAETFVTPAKQVDEPKGVSGQAD 329
                 + ++E    G      N   N  +  VT A+   E  G   + D
Sbjct: 724 AEEGNSVPEDEAYANGGATPQDNNTANTLDIIVTEAEVSAETSGYDTEMD 773


>tr|B8M7R2|B8M7R2_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_030570 PE=4
           SV=1
          Length = 289

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 24  VSNLQEHPVGPHNLQEKGPVVIEEDRGLKVAGISEVQIDV 143
           +S  Q + V PH  Q   PV+ +   G ++AGI EVQ DV
Sbjct: 59  ISGSQIYLVDPHRTQTDPPVIAQFANGTRIAGIVEVQEDV 98


>tr|Q4T670|Q4T670_TETNG Chromosome undetermined SCAF8892, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00006454001 PE=4 SV=1
          Length = 444

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 154 TLFPTSICTS-EIPATLSPRSSSITTGPFSCKL*GPTGCSCKFDTTGK 14
           T  PTS CT+  +P+    RS   T+  FSC      GCSC FDT  K
Sbjct: 170 TKVPTSNCTTGNLPSVPLIRSKKETSTTFSCP---ELGCSCVFDTRQK 214


>tr|Q1LXB6|Q1LXB6_DANRE Novel protein similar to human and mouse
            steroid receptor-interacting SNF2 domain protein
            (Srisnf2l) (Fragment) OS=Danio rerio GN=si:dkey-42i9.10
            PE=4 SV=1
          Length = 1305

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
 Frame = -3

Query: 370  SHLLRFFLPVLEPLSA-WPDTPLG--------SSTCLAGVTNVSASFSPGFFISTSHPKP 218
            SHL++     L  L A +P  PLG        SSTC    TN ++S   G   S+S   P
Sbjct: 1153 SHLMQQAGQTLGDLHAMFPTEPLGLGVSNSTLSSTCS---TNTTSSSHSGMLASSSSSVP 1209

Query: 217  ISSSFCK*TILPS*KLHDKDSTL---FPTSICTSEIPATLSPRSSSITTGPFS 68
             SS     + LP   ++   +++   FP        P +L PR  S T+ P S
Sbjct: 1210 SSSLSSTSSSLPPFMMNPSMASMLSGFPVPFSQPLFPGSLHPRGLSSTSTPAS 1262


>tr|Q9LU44|Q9LU44_ARATH Similarity to transcription or splicing
           factor (Putative uncharacterized protein At5g51300)
           OS=Arabidopsis thaliana GN=At5g51300 PE=2 SV=1
          Length = 804

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/23 (65%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +3

Query: 420 KRRSRWAAEEPK-QIQLPDLFKE 485
           KR+SRWA +EP+ QIQLPD  K+
Sbjct: 125 KRKSRWADDEPRTQIQLPDFMKD 147