DK955389 |
Clone id |
TST39A01NGRL0022_P12 |
Library |
TST39 |
Length |
614 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_P12. 5' end sequence. |
Accession |
DK955389 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1194Contig1 |
Sequence |
ACCTGTTCTACATCCGCCATCGTGCAGCGTATGCGGCAGCAGAATTTCAGCAGCTGCGTC GCCGCGCCCATTATGCCCACCGGTCCATGGAAATCGTCACCAAGCTCAGGTTCTTGCAAG GGCGAGTGCAGGAGGGTGGCCCGGTTGTCAAGATCTCTCTTCTTCTCAACATCGCTTTGT TGCGTCCTCGCCTTTCGGACACTCCAACGCAGTGCTAAGCTCAGATTGGGCTCTTGGTTC CTCTCCTCTCAGCATTCAAGCCCCATCAGGGTCCGCCCAAAGGCCCCCTGACACTGATGT CATGGGCCTTCTGCTCCGCCAGCGCATTGTCTTCCTCGGCTTCAACCTGGATGAGTTCGC TGCGGATGCCATCATCAGCCAGCTTCTGCTTCTTGATGCTCAAGACCCTACTAAGGATAT CCGCCTCTTCATTAACAGCCCCGGAGGTGCCACCAGTGCTTCCATGGCCGTGTATGATGC TATTCAGCTGTGTCGTGCCGATATATCTACAATAGCATTCGGTATTGCGGCATCGACTGC TGCCATAGTGTTAGCAGGTGGAACAAAGGGGAAAAGGTTTGCGATGCCAAACACGAGAAT TATGCTTCATCAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q94B60 |
Definition |
sp|Q94B60|CLPP4_ARATH ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana |
Align length |
159 |
Score (bit) |
174.0 |
E-value |
3.0e-43 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NTR6 |
Definition |
tr|A9NTR6|A9NTR6_PICSI ATP-dependent Clp protease proteolytic subunit OS=Picea sitchensis |
Align length |
149 |
Score (bit) |
189.0 |
E-value |
8.0e-47 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955389|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_P12, 5' (614 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NTR6|A9NTR6_PICSI ATP-dependent Clp protease proteolytic su... 189 8e-47 tr|A9PA38|A9PA38_POPTR ATP-dependent Clp protease proteolytic su... 180 5e-44 tr|A7PJQ1|A7PJQ1_VITVI ATP-dependent Clp protease proteolytic su... 177 3e-43 tr|A9TZR6|A9TZR6_PHYPA ATP-dependent Clp protease proteolytic su... 171 3e-41 tr|Q9FRM4|Q9FRM4_ORYSA ATP-dependent Clp protease proteolytic su... 166 1e-39 tr|Q7XBR2|Q7XBR2_ORYSJ ATP-dependent Clp protease proteolytic su... 166 1e-39 tr|B4FP39|B4FP39_MAIZE ATP-dependent Clp protease proteolytic su... 162 1e-38 tr|A9RE44|A9RE44_PHYPA ATP-dependent Clp protease proteolytic su... 160 4e-38 tr|A9NTW0|A9NTW0_PICSI ATP-dependent Clp protease proteolytic su... 158 3e-37 tr|A9NRW7|A9NRW7_PICSI ATP-dependent Clp protease proteolytic su... 157 6e-37 tr|Q5QMT1|Q5QMT1_ORYSJ Putative ATP-dependent Clp protease, prot... 155 1e-36 tr|Q0JMF9|Q0JMF9_ORYSJ ATP-dependent Clp protease proteolytic su... 155 1e-36 tr|A2WQJ7|A2WQJ7_ORYSI ATP-dependent Clp protease proteolytic su... 155 1e-36 tr|B7FH45|B7FH45_MEDTR Putative uncharacterized protein OS=Medic... 154 3e-36 tr|A9RYV9|A9RYV9_PHYPA ATP-dependent Clp protease proteolytic su... 154 3e-36 tr|A7PR54|A7PR54_VITVI ATP-dependent Clp protease proteolytic su... 153 7e-36 tr|A9T6I1|A9T6I1_PHYPA ATP-dependent Clp protease proteolytic su... 151 3e-35 tr|B6TBU2|B6TBU2_MAIZE ATP-dependent Clp protease proteolytic su... 149 1e-34 tr|A8IJ60|A8IJ60_CHLRE ATP-dependent Clp protease proteolytic su... 149 2e-34 tr|Q8W4Z1|Q8W4Z1_BRAOL ATP-dependent Clp protease proteolytic su... 148 3e-34 tr|Q9M4F0|Q9M4F0_BRANA ATP-dependent Clp protease proteolytic su... 147 6e-34 tr|Q93YL4|Q93YL4_BRANA ATP-dependent Clp protease proteolytic su... 147 6e-34 tr|Q9ST19|Q9ST19_BRACM ATP-dependent Clp protease proteolytic su... 145 2e-33 tr|Q019I1|Q019I1_OSTTA ATP-dependent Clp protease proteolytic su... 144 5e-33 tr|A4RXD2|A4RXD2_OSTLU ATP-dependent Clp protease proteolytic su... 141 3e-32 tr|Q79CM2|Q79CM2_SYNE7 ATP-dependent Clp protease proteolytic su... 133 9e-30 tr|Q4C1E0|Q4C1E0_CROWT ATP-dependent Clp protease proteolytic su... 132 1e-29 tr|B4AWU3|B4AWU3_9CHRO ATP-dependent Clp protease, proteolytic s... 132 2e-29 tr|A6LLP4|A6LLP4_THEM4 ATP-dependent Clp protease proteolytic su... 132 2e-29 tr|A3IU92|A3IU92_9CHRO ATP-dependent Clp protease proteolytic su... 132 2e-29
>tr|A9NTR6|A9NTR6_PICSI ATP-dependent Clp protease proteolytic subunit OS=Picea sitchensis PE=2 SV=1 Length = 317
Score = 189 bits (481), Expect = 8e-47 Identities = 100/149 (67%), Positives = 118/149 (79%), Gaps = 2/149 (1%) Frame = +2
Query: 173 RFVASSPFGHSNAVLSSDWAL--GSSPLSIQAPSGSAQRPPDTDVMGLLLRQRIVFLGFN 346 R V+SS G + WA G ++ Q P+ SAQR D DVMGLLLRQRIVFLG N Sbjct: 62 RLVSSSGRGFKSRAYIDAWAAATGGGVIAQQTPA-SAQRSADGDVMGLLLRQRIVFLGSN 120
Query: 347 LDEFAADAIISQLLLLDAQDPTKDIRLFINSPGGATSASMAVYDAIQLCRADISTIAFGI 526 +D+F ADAIISQLLLLDAQ+P KDIRLFIN PGG+ +A+M ++D IQLCRAD+STIAFG+ Sbjct: 121 MDDFVADAIISQLLLLDAQNPNKDIRLFINCPGGSINAAMGIFDTIQLCRADVSTIAFGL 180
Query: 527 AASTAAIVLAGGTKGKRFAMPNTRIMLHQ 613 AASTA+IVLAGG+KGKR AMPNTRIM+HQ Sbjct: 181 AASTASIVLAGGSKGKRLAMPNTRIMMHQ 209
>tr|A9PA38|A9PA38_POPTR ATP-dependent Clp protease proteolytic subunit OS=Populus trichocarpa PE=2 SV=1 Length = 297
Score = 180 bits (457), Expect = 5e-44 Identities = 91/121 (75%), Positives = 105/121 (86%) Frame = +2
Query: 251 SIQAPSGSAQRPPDTDVMGLLLRQRIVFLGFNLDEFAADAIISQLLLLDAQDPTKDIRLF 430 S Q P+ S R +TD MGLLLR+RIVFLG N+D+F ADAIISQLLLLDAQDPTKDIRLF Sbjct: 70 SPQTPATS-MRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLF 128
Query: 431 INSPGGATSASMAVYDAIQLCRADISTIAFGIAASTAAIVLAGGTKGKRFAMPNTRIMLH 610 +N PGG+ SASMA+YD +QL RAD+STIA GI+ASTA+I+L GGTKGKRFAMPNTRIM+H Sbjct: 129 VNCPGGSLSASMAIYDVVQLVRADVSTIALGISASTASIILGGGTKGKRFAMPNTRIMIH 188
Query: 611 Q 613 Q Sbjct: 189 Q 189
>tr|A7PJQ1|A7PJQ1_VITVI ATP-dependent Clp protease proteolytic subunit OS=Vitis vinifera GN=GSVIVT00018829001 PE=3 SV=1 Length = 291
Score = 177 bits (450), Expect = 3e-43 Identities = 93/136 (68%), Positives = 111/136 (81%) Frame = +2
Query: 206 NAVLSSDWALGSSPLSIQAPSGSAQRPPDTDVMGLLLRQRIVFLGFNLDEFAADAIISQL 385 ++VL+ A GS Q P G R + D MGLLL++RIVFLG N+D+F ADAIISQL Sbjct: 54 DSVLALPLAHGS-----QTP-GMGARGAEADAMGLLLKERIVFLGNNVDDFVADAIISQL 107
Query: 386 LLLDAQDPTKDIRLFINSPGGATSASMAVYDAIQLCRADISTIAFGIAASTAAIVLAGGT 565 LLLDAQDPTKDIRLFINSPGG+ SA+MA+YD +QL RAD+ST+A GI+ASTA+I+L GGT Sbjct: 108 LLLDAQDPTKDIRLFINSPGGSLSATMAIYDIVQLVRADVSTVALGISASTASIILGGGT 167
Query: 566 KGKRFAMPNTRIMLHQ 613 KGKRFAMPNTRIM+HQ Sbjct: 168 KGKRFAMPNTRIMIHQ 183
>tr|A9TZR6|A9TZR6_PHYPA ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_5896 PE=3 SV=1 Length = 230
Score = 171 bits (433), Expect = 3e-41 Identities = 82/111 (73%), Positives = 98/111 (88%) Frame = +2
Query: 281 RPPDTDVMGLLLRQRIVFLGFNLDEFAADAIISQLLLLDAQDPTKDIRLFINSPGGATSA 460 R + DVMGL+L+QRIVFLG +D+F ADAI+SQLLLLDA DP K+IRLF+N PGG+ SA Sbjct: 9 RSAEADVMGLMLKQRIVFLGHQMDDFVADAIVSQLLLLDAVDPNKEIRLFVNCPGGSISA 68
Query: 461 SMAVYDAIQLCRADISTIAFGIAASTAAIVLAGGTKGKRFAMPNTRIMLHQ 613 +MA++DAIQLCRAD+STI FG+AASTAAIVLAGGT GKR AMPN+RIM+HQ Sbjct: 69 AMAIFDAIQLCRADVSTICFGLAASTAAIVLAGGTPGKRLAMPNSRIMMHQ 119
>tr|Q9FRM4|Q9FRM4_ORYSA ATP-dependent Clp protease proteolytic subunit OS=Oryza sativa GN=OSJNBa0056G17.6 PE=3 SV=1 Length = 293
Score = 166 bits (419), Expect = 1e-39 Identities = 86/147 (58%), Positives = 107/147 (72%) Frame = +2
Query: 173 RFVASSPFGHSNAVLSSDWALGSSPLSIQAPSGSAQRPPDTDVMGLLLRQRIVFLGFNLD 352 R + +P ++A + W G S +P A DVMGLLLR+RIVFLG ++ Sbjct: 43 RLTSLNPPRAASAPSTPLWEAGVRAESSDSPGAGA----GGDVMGLLLRERIVFLGNEIE 98
Query: 353 EFAADAIISQLLLLDAQDPTKDIRLFINSPGGATSASMAVYDAIQLCRADISTIAFGIAA 532 +F ADA++SQLLLLDA DP DIRLF+NSPGG+ SA+MA+YD +QL RAD+STI GIA Sbjct: 99 DFLADAVVSQLLLLDAVDPNSDIRLFVNSPGGSLSATMAIYDVMQLVRADVSTIGLGIAG 158
Query: 533 STAAIVLAGGTKGKRFAMPNTRIMLHQ 613 STA+I+L GGTKGKRFAMPNTRIM+HQ Sbjct: 159 STASIILGGGTKGKRFAMPNTRIMIHQ 185
>tr|Q7XBR2|Q7XBR2_ORYSJ ATP-dependent Clp protease proteolytic subunit OS=Oryza sativa subsp. japonica GN=Os10g0580800 PE=2 SV=1 Length = 293
Score = 166 bits (419), Expect = 1e-39 Identities = 86/147 (58%), Positives = 107/147 (72%) Frame = +2
Query: 173 RFVASSPFGHSNAVLSSDWALGSSPLSIQAPSGSAQRPPDTDVMGLLLRQRIVFLGFNLD 352 R + +P ++A + W G S +P A DVMGLLLR+RIVFLG ++ Sbjct: 43 RLTSLNPPRAASAPSTPLWEAGVRAESSDSPGAGA----GGDVMGLLLRERIVFLGNEIE 98
Query: 353 EFAADAIISQLLLLDAQDPTKDIRLFINSPGGATSASMAVYDAIQLCRADISTIAFGIAA 532 +F ADA++SQLLLLDA DP DIRLF+NSPGG+ SA+MA+YD +QL RAD+STI GIA Sbjct: 99 DFLADAVVSQLLLLDAVDPNSDIRLFVNSPGGSLSATMAIYDVMQLVRADVSTIGLGIAG 158
Query: 533 STAAIVLAGGTKGKRFAMPNTRIMLHQ 613 STA+I+L GGTKGKRFAMPNTRIM+HQ Sbjct: 159 STASIILGGGTKGKRFAMPNTRIMIHQ 185
>tr|B4FP39|B4FP39_MAIZE ATP-dependent Clp protease proteolytic subunit 1 OS=Zea mays PE=2 SV=1 Length = 289
Score = 162 bits (411), Expect = 1e-38 Identities = 78/106 (73%), Positives = 93/106 (87%) Frame = +2
Query: 296 DVMGLLLRQRIVFLGFNLDEFAADAIISQLLLLDAQDPTKDIRLFINSPGGATSASMAVY 475 DVMGLLLR+RIVFLG +++F ADA++SQLLLLDA DP DIRLF+NSPGG+ SA+MA+Y Sbjct: 76 DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAIDPDSDIRLFVNSPGGSLSATMAIY 135
Query: 476 DAIQLCRADISTIAFGIAASTAAIVLAGGTKGKRFAMPNTRIMLHQ 613 D +QL RAD+STI GIA STA+I+L GGTKGKRFAMPNTRIM+HQ Sbjct: 136 DVMQLVRADVSTIGMGIAGSTASIILGGGTKGKRFAMPNTRIMIHQ 181
>tr|A9RE44|A9RE44_PHYPA ATP-dependent Clp protease proteolytic subunit OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_64895 PE=3 SV=1 Length = 232
Score = 160 bits (406), Expect = 4e-38 Identities = 78/113 (69%), Positives = 96/113 (84%) Frame = +2
Query: 275 AQRPPDTDVMGLLLRQRIVFLGFNLDEFAADAIISQLLLLDAQDPTKDIRLFINSPGGAT 454 A + + DVMGL+L+QRIVFLG +D+F AD+IISQLLLLDA DP +DIRLFIN PGG+ Sbjct: 9 AMQSAEGDVMGLMLKQRIVFLGNQMDDFVADSIISQLLLLDAIDPKQDIRLFINCPGGSI 68
Query: 455 SASMAVYDAIQLCRADISTIAFGIAASTAAIVLAGGTKGKRFAMPNTRIMLHQ 613 SA+M ++DA+QLC+ DISTI FG AASTAA++LA GTKGKR AMPN+RIM+HQ Sbjct: 69 SAAMGIFDAMQLCKCDISTICFGFAASTAALLLAAGTKGKRLAMPNSRIMMHQ 121
>tr|A9NTW0|A9NTW0_PICSI ATP-dependent Clp protease proteolytic subunit OS=Picea sitchensis PE=2 SV=1 Length = 341
Score = 158 bits (399), Expect = 3e-37 Identities = 90/190 (47%), Positives = 119/190 (62%), Gaps = 8/190 (4%) Frame = +2
Query: 68 PLCPPVHGNRHQAQVLARASAGGWPGCQDLS-------SSQHRFVASSPFGHSNAVLSSD 226 P CP + Q+ + + S P C S S+ R A P G A+ SS Sbjct: 23 PSCPSI-----QSAIFNKNSLSSPPCCFVCSCSSASHLGSRQRMQAVKPIG---ALSSSR 74
Query: 227 WALGSSPLSIQAPSGS-AQRPPDTDVMGLLLRQRIVFLGFNLDEFAADAIISQLLLLDAQ 403 +L +S S+ S RP D D +LLRQRIVFLG +D+ +AD IISQLLLLD + Sbjct: 75 GSLSASLDSVGTSSSLWMPRPEDLDTTSMLLRQRIVFLGSQVDDVSADFIISQLLLLDLE 134
Query: 404 DPTKDIRLFINSPGGATSASMAVYDAIQLCRADISTIAFGIAASTAAIVLAGGTKGKRFA 583 D TKDI+LFINSPGG+ +A M +YDA++LC+AD+ST+ FG+AAS A +LA GT+GKRF Sbjct: 135 DSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCFGLAASMGAFLLASGTRGKRFC 194
Query: 584 MPNTRIMLHQ 613 MPN ++M+HQ Sbjct: 195 MPNAKVMIHQ 204
>tr|A9NRW7|A9NRW7_PICSI ATP-dependent Clp protease proteolytic subunit OS=Picea sitchensis PE=2 SV=1 Length = 341
Score = 157 bits (396), Expect = 6e-37 Identities = 90/190 (47%), Positives = 119/190 (62%), Gaps = 8/190 (4%) Frame = +2
Query: 68 PLCPPVHGNRHQAQVLARASAGGWPGCQDLS-------SSQHRFVASSPFGHSNAVLSSD 226 P CP + Q+ + + S P C S S+ R A P G A+ SS Sbjct: 23 PSCPSI-----QSAIFNKNSLSSPPCCFVCSCSSASHLGSRQRMQAVKPNG---ALSSSR 74
Query: 227 WALGSSPLSIQAPSGS-AQRPPDTDVMGLLLRQRIVFLGFNLDEFAADAIISQLLLLDAQ 403 +L +S S+ S RP D D +LLRQRIVFLG +D+ +AD IISQLLLLD + Sbjct: 75 GSLSASLDSVGTSSSLWMPRPEDLDTTSMLLRQRIVFLGSQVDDVSADFIISQLLLLDLE 134
Query: 404 DPTKDIRLFINSPGGATSASMAVYDAIQLCRADISTIAFGIAASTAAIVLAGGTKGKRFA 583 D TKDI+LFINSPGG+ +A M +YDA++LC+AD+ST+ FG+AAS A +LA GT+GKRF Sbjct: 135 DSTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCFGLAASMGAFLLASGTRGKRFC 194
Query: 584 MPNTRIMLHQ 613 MPN ++M+HQ Sbjct: 195 MPNAKVMIHQ 204
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