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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955393
Clone id TST39A01NGRL0022_P16
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_P16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AGTTCTTGAGATTACTCTTCATTTAAGTGGTGAGCATGCAATCAACATTGAAAGGAGTTA
GCCGTAGCACTTCAATTGTTGTCTTTGGAGCTTGAAAGCCGACAAAAGCAATGTCTTCTT
GGAGCACATAAGCCATTAGCTGCTCATATTCTGAGACGGATGACGTCGTTATGATGATCC
GAGGAGACATGCAGACATGAACTTGGGGGTCATCACCAGCAAGTAGTGGGAATCAGCTGG
AAAGAGTCGCTTTATCTCGAGGAAATGACAAAATGACACTTCGTAGTAGTGGGCTCAACT
CATGGTTGGGTGGAGAGACAGGATGTTCTCTACCCATCGTTGAGTCGTACCTGGTTGCGA
ACAACCTTCGACAAGGAGGTAAGTTTCCTCTGCAATGTATGCAATTACCCTTGTCAGTCA
GGTCTTGTACACTGATGTAGCGGCCCCGCATTGTAGTCGTTAATGTTGTGAAGTAACTGG
ATGAGCAATACTACTTCAAGCATTAACGTGGTAGTGTGCGACATGCGGTCAAATGT
■■Homology search results ■■ -
sp_hit_id Q7M7R1
Definition sp|Q7M7R1|RS9_WOLSU 30S ribosomal protein S9 OS=Wolinella succinogenes
Align length 40
Score (bit) 31.6
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955393|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P16, 5'
         (536 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7M7R1|RS9_WOLSU 30S ribosomal protein S9 OS=Wolinella succin...    32   2.5  
sp|Q94KT8|COBRA_ARATH Protein COBRA OS=Arabidopsis thaliana GN=C...    31   3.3  
sp|Q5HSV2|RS9_CAMJR 30S ribosomal protein S9 OS=Campylobacter je...    31   4.3  
sp|A1W187|RS9_CAMJJ 30S ribosomal protein S9 OS=Campylobacter je...    31   4.3  
sp|Q9PMI3|RS9_CAMJE 30S ribosomal protein S9 OS=Campylobacter je...    31   4.3  
sp|A7H5K0|RS9_CAMJD 30S ribosomal protein S9 OS=Campylobacter je...    31   4.3  
sp|A8FNE5|RS9_CAMJ8 30S ribosomal protein S9 OS=Campylobacter je...    31   4.3  
sp|Q8L8Q7|COBL2_ARATH COBRA-like protein 2 OS=Arabidopsis thalia...    31   4.3  
sp|Q9SRT7|COBL1_ARATH COBRA-like protein 1 OS=Arabidopsis thalia...    30   5.7  
sp|O35350|CAN1_MOUSE Calpain-1 catalytic subunit OS=Mus musculus...    30   5.7  
sp|Q8K410|ADA32_MOUSE ADAM 32 OS=Mus musculus GN=Adam32 PE=2 SV=2      30   5.7  
sp|Q7VIV5|RS9_HELHP 30S ribosomal protein S9 OS=Helicobacter hep...    30   7.4  

>sp|Q7M7R1|RS9_WOLSU 30S ribosomal protein S9 OS=Wolinella
           succinogenes GN=rpsI PE=3 SV=1
          Length = 129

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 237 LERVALSRGNDKMTLRSSGLNSWLGGETGCSLPIVESYLV 356
           + +V L+ G+ K+T+  + LN WLGG     + +++  L+
Sbjct: 14  IAKVWLTPGSGKLTVNGTTLNDWLGGHEAIKMKVMQPLLL 53


>sp|Q94KT8|COBRA_ARATH Protein COBRA OS=Arabidopsis thaliana GN=COB
           PE=2 SV=1
          Length = 456

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -2

Query: 418 TDKGNCIHCRGNLPPCRRLFATRYDSTMGREHPVSPPNHELSPLLR-SVILSFPRDKATL 242
           T++G+C   +GN+P C      + D T+    P +P N +++   +  V+ S+ +D AT 
Sbjct: 101 TEQGDCSKYKGNIPHC-----CKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPATA 155

Query: 241 SS*FPLLAG 215
           +S F +  G
Sbjct: 156 ASSFQISVG 164


>sp|Q5HSV2|RS9_CAMJR 30S ribosomal protein S9 OS=Campylobacter
           jejuni (strain RM1221) GN=rpsI PE=3 SV=1
          Length = 129

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 237 LERVALSRGNDKMTLRSSGLNSWLGGETGCSLPIVESYLV 356
           + +V +  G+ K+++    LN+WLGG     L +V+  LV
Sbjct: 14  IAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLV 53


>sp|A1W187|RS9_CAMJJ 30S ribosomal protein S9 OS=Campylobacter
           jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
           GN=rpsI PE=3 SV=1
          Length = 129

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 237 LERVALSRGNDKMTLRSSGLNSWLGGETGCSLPIVESYLV 356
           + +V +  G+ K+++    LN+WLGG     L +V+  LV
Sbjct: 14  IAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLV 53


>sp|Q9PMI3|RS9_CAMJE 30S ribosomal protein S9 OS=Campylobacter
           jejuni GN=rpsI PE=3 SV=1
          Length = 129

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 237 LERVALSRGNDKMTLRSSGLNSWLGGETGCSLPIVESYLV 356
           + +V +  G+ K+++    LN+WLGG     L +V+  LV
Sbjct: 14  IAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLV 53


>sp|A7H5K0|RS9_CAMJD 30S ribosomal protein S9 OS=Campylobacter
           jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 /
           269.97) GN=rpsI PE=3 SV=1
          Length = 129

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 237 LERVALSRGNDKMTLRSSGLNSWLGGETGCSLPIVESYLV 356
           + +V +  G+ K+++    LN+WLGG     L +V+  LV
Sbjct: 14  IAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLV 53


>sp|A8FNE5|RS9_CAMJ8 30S ribosomal protein S9 OS=Campylobacter
           jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC
           11828) GN=rpsI PE=3 SV=1
          Length = 129

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 237 LERVALSRGNDKMTLRSSGLNSWLGGETGCSLPIVESYLV 356
           + +V +  G+ K+++    LN+WLGG     L +V+  LV
Sbjct: 14  IAKVWVKPGSGKISVNGVDLNTWLGGHEAIKLKVVQPLLV 53


>sp|Q8L8Q7|COBL2_ARATH COBRA-like protein 2 OS=Arabidopsis thaliana
           GN=COBL2 PE=1 SV=2
          Length = 441

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -2

Query: 418 TDKGNCIHCRGNLPPCRRLFATRYDSTMGREHPVSPPNHELSPLLR-SVILSFPRDKATL 242
           T++G+C   +GN+P C +      D       P +P N ++S   R  VI ++ +D AT 
Sbjct: 93  TEQGDCSKFKGNIPHCCKKTPAIVDLL-----PGTPYNQQISNCCRGGVISAWAQDPATA 147

Query: 241 SS*FPLLAG 215
            S F +  G
Sbjct: 148 ISSFQISVG 156


>sp|Q9SRT7|COBL1_ARATH COBRA-like protein 1 OS=Arabidopsis thaliana
           GN=COBL1 PE=2 SV=1
          Length = 452

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -2

Query: 418 TDKGNCIHCRGNLPPCRRLFATRYDSTMGREHPVSPPNHELSPLLRSVIL-SFPRDKATL 242
           T++G+C   +G +P C +   +  D       P SP N +++   R  +L S+ +D AT 
Sbjct: 98  TEQGDCSKFKGTIPHCCKKTPSVVDLL-----PGSPYNQQIANCCRGGVLNSWAQDPATA 152

Query: 241 SS*FPLLAG 215
            S F L  G
Sbjct: 153 VSAFQLTVG 161


>sp|O35350|CAN1_MOUSE Calpain-1 catalytic subunit OS=Mus musculus
           GN=Capn1 PE=2 SV=1
          Length = 713

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 199 ELGGHHQQVVGISWKESLYLEEMTK*HFVVVGSTHGWVERQDVLYPSLSRTWL 357
           ELG H  +  GI WK     E M+   F+V G+T     R D+   +L   WL
Sbjct: 72  ELGPHSSKTYGIKWKRP--TELMSNPQFIVDGAT-----RTDICQGALGDCWL 117
tr_hit_id A9UYI9
Definition tr|A9UYI9|A9UYI9_MONBE Predicted protein OS=Monosiga brevicollis
Align length 79
Score (bit) 36.6
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955393|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P16, 5'
         (536 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9UYI9|A9UYI9_MONBE Predicted protein OS=Monosiga brevicollis...    37   0.85 
tr|A8H2F0|A8H2F0_SHEPA Glycosyl transferase family 2 OS=Shewanel...    36   1.4  
tr|Q1KUQ9|Q1KUQ9_9ROSI Putative uncharacterized protein OS=Cleom...    36   1.4  
tr|Q11PL5|Q11PL5_CYTH3 Outer membrane protein; probable bacteria...    35   1.9  
tr|B8CG37|B8CG37_THAPS Predicted protein OS=Thalassiosira pseudo...    34   5.5  
tr|A4S0J3|A4S0J3_OSTLU Predicted protein OS=Ostreococcus lucimar...    33   7.2  
tr|A8N2F2|A8N2F2_COPC7 Putative uncharacterized protein OS=Copri...    33   9.3  

>tr|A9UYI9|A9UYI9_MONBE Predicted protein OS=Monosiga brevicollis
           GN=36938 PE=4 SV=1
          Length = 339

 Score = 36.6 bits (83), Expect = 0.85
 Identities = 25/79 (31%), Positives = 41/79 (51%)
 Frame = -2

Query: 400 IHCRGNLPPCRRLFATRYDSTMGREHPVSPPNHELSPLLRSVILSFPRDKATLSS*FPLL 221
           ++ R  + P R  F++ +DS+ G+E  VSPP  +   L++ +       K   S  F LL
Sbjct: 130 LNLRVQIMPARVAFSSGFDSSSGKEIKVSPPKDKTHTLVKML-------KPETSYTFRLL 182

Query: 220 AGDDPQVHVCMSPRIIITT 164
           AG+  +  V + P + ITT
Sbjct: 183 AGN--EAGVTIGPEVEITT 199


>tr|A8H2F0|A8H2F0_SHEPA Glycosyl transferase family 2 OS=Shewanella
           pealeana (strain ATCC 700345 / ANG-SQ1) GN=Spea_1411
           PE=4 SV=1
          Length = 316

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 316 RQDVLYPSLSRTWLRTTFDKEVSFL 390
           R+DVL+ S+ RTWL + FDK  SF+
Sbjct: 136 REDVLFDSIDRTWLNSVFDKGASFV 160


>tr|Q1KUQ9|Q1KUQ9_9ROSI Putative uncharacterized protein OS=Cleome
           spinosa PE=4 SV=1
          Length = 436

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -2

Query: 418 TDKGNCIHCRGNLPPCRRLFATRYDSTMGREHPVSPPNHELSPLLR-SVILSFPRDKATL 242
           T++G+C   +GN+P C      + D T+    P +P N +++   +  VI SF +D AT 
Sbjct: 81  TEQGDCSRFKGNIPHC-----CKQDPTVVDLMPGTPYNQQIANCCKGGVINSFAQDPATT 135

Query: 241 SS*FPLLAG 215
            S F L  G
Sbjct: 136 VSAFQLTVG 144


>tr|Q11PL5|Q11PL5_CYTH3 Outer membrane protein; probable bacterial
           surface antigen OS=Cytophaga hutchinsonii (strain ATCC
           33406 / NCIMB 9469) GN=yaeT PE=4 SV=1
          Length = 848

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
 Frame = +3

Query: 201 TWGSSPASSGNQLERVALSRGNDKMTLRSSGLNSWLGGETGCSLPI-----VESYLVANN 365
           TW   PA  G +L     + G    T   S    WLGG+   SL +     V+S L+ N 
Sbjct: 487 TWSPLPAGDGQRLAFRVQANGRTYQTYTISFTEPWLGGKKPTSLSVSLQHSVQSQLIYNG 546

Query: 366 LRQGGKFPLQCMQLPLSV 419
            R      LQ   L +SV
Sbjct: 547 TRSVKSGSLQVSGLTVSV 564


>tr|B8CG37|B8CG37_THAPS Predicted protein OS=Thalassiosira pseudonana
            CCMP1335 GN=THAPSDRAFT_11974 PE=4 SV=1
          Length = 3410

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +3

Query: 207  GSSPASSGNQLERVALSRGNDKMTLRSSGLNSWLGGETGCSLPIVESYLVANNLRQGGK 383
            GS+P+S G++  R++ S   DK T  S G N  +GG  G SL  VE    A N ++ G+
Sbjct: 1276 GSAPSSIGSKGGRLSSS---DKGTPESKGTNIIMGGAVGGSLATVEVGADAENQQEFGR 1331


>tr|A4S0J3|A4S0J3_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_35257 PE=4 SV=1
          Length = 296

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -2

Query: 481 SSYFTTLTTTMRGRYISVQDLTDKGNCIHCRGNLPPCRRLFATRYDSTMGREHPVSPPNH 302
           S++  T   T  G +++++D T +  C+H     P   R     +D T   E     P H
Sbjct: 171 STFLNTDPPTCVGIWLALEDCTLENGCLHALSGTPDVARRMVVDHDGTRAVEFIGDAPTH 230

Query: 301 ELS 293
           +L+
Sbjct: 231 DLT 233


>tr|A8N2F2|A8N2F2_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_01805 PE=4 SV=1
          Length = 374

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 417 LTRVIAYIAEETYLLVEGCSQPGTTQRWVE--NILSLHPTMS*AHYYEVSFCHFL 259
           +  ++AYIA  T +  +  S  G    W+E   +L LHP      Y ++SF  FL
Sbjct: 180 VVHLLAYIAPPTPVANDEASVDGRRSSWLEYFQVLDLHPESRSLSYRDISFLQFL 234