NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955395
Clone id TST39A01NGRL0022_P18
Library
Length 564
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_P18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGTGAGAAGGGCCCAAATGCAAAAGAGAGGTGTGCACTCTCTTCTTCAGCTAGCGGGAAG
ACTCGGAGGCAGGGCGCGTGTTGAAAATGCGCCAGCACGATCACTGAATGGGCGATGGGC
GATGCTCCCTCCCGTTCCTGTTGTTCCTAAGAGCAATGGCTTACTTGTTTGCTTGGAGAA
GCGCAAGCCACTGATTGCCATAGCCTGGCTGAAGCAGTGCTGCCCGCTAATCTCTCAAAA
TGATGCCGAAACTCTGTTCCGCACAGGCCAGGTGAAAATTCATTTGGGAGCCTCTGAAGC
AAGCGACCCTGAAAAATTTCAACTTAAGAAAATAACTAGGAGGAAGGTTCTTGCAGAAGG
AACGATTCTCTGTTTGCCAACTCGCTCTCTGCAGTTGGTGAATGAAAGCCGTGCAGCAAC
GAGACTAAACACCATATCTGAGGTTGGTGAAACTATTTCAGAAAAGGACGAGGACTGAAG
CATTGATGTTTGCTCAGTCAAAGTGCTGAATGCCCTAAAAAAAGTGGGGGGTGAGTTGAT
TCACGAGGGTACCACGGTAGGTGG
■■Homology search results ■■ -
sp_hit_id A6LPD5
Definition sp|A6LPD5|PROA_CLOB8 Gamma-glutamyl phosphate reductase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
Align length 100
Score (bit) 33.1
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955395|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P18, 5'
         (564 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6LPD5|PROA_CLOB8 Gamma-glutamyl phosphate reductase OS=Clost...    33   0.97 

>sp|A6LPD5|PROA_CLOB8 Gamma-glutamyl phosphate reductase
           OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB
           8052) GN=proA PE=3 SV=1
          Length = 414

 Score = 33.1 bits (74), Expect = 0.97
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +2

Query: 149 KSNGLLVCLEKRKPLIAIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEASDPEKFQLK 328
           + NGL +  +KR PL  I  + +  P ++ + A    +TG   I  G SEA +  K  +K
Sbjct: 101 RPNGLQIG-QKRVPLGVIGIIYEARPNVTCDAAGLCIKTGNAVILRGGSEAINSNKAIVK 159

Query: 329 KITRRKVLAEGTILCLPTRSLQLVNES--RAATRLNTISE 442
            +T + +   G    LP  S+QLV ++    AT +  ++E
Sbjct: 160 ALT-KGIERSG----LPKASVQLVEDTSREVATEMMRLNE 194
tr_hit_id B6U2M4
Definition tr|B6U2M4|B6U2M4_MAIZE RNA binding protein OS=Zea mays
Align length 65
Score (bit) 40.4
E-value 0.067
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955395|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P18, 5'
         (564 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6U2M4|B6U2M4_MAIZE RNA binding protein OS=Zea mays PE=2 SV=1       40   0.067
tr|Q69K07|Q69K07_ORYSJ Os09g0103500 protein OS=Oryza sativa subs...    40   0.088
tr|B8BCS6|B8BCS6_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.088
tr|A8MQT1|A8MQT1_HUMAN Putative uncharacterized protein CSAG4 (F...    35   2.8  
tr|Q9LT72|Q9LT72_ARATH Similarity to unknown protein (At3g19440)...    34   6.3  
tr|A3BVX6|A3BVX6_ORYSJ Putative uncharacterized protein OS=Oryza...    34   6.3  
tr|B5GR89|B5GR89_STRCL Helicase OS=Streptomyces clavuligerus ATC...    33   8.3  

>tr|B6U2M4|B6U2M4_MAIZE RNA binding protein OS=Zea mays PE=2 SV=1
          Length = 439

 Score = 40.4 bits (93), Expect = 0.067
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = +2

Query: 197 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEASDPE----KFQLKKITRRKVLAEGT 364
           AI W++ CCP +  +  + LFR  +VK +L  ++ S  +    + +L++++ +  L  G 
Sbjct: 83  AIRWVRHCCPHVPASLVQKLFRLRKVKKNLVTADTSSTDSITLQLRLRRVSAKDELVPGD 142

Query: 365 ILCLP 379
           IL LP
Sbjct: 143 ILFLP 147


>tr|Q69K07|Q69K07_ORYSJ Os09g0103500 protein OS=Oryza sativa subsp.
           japonica GN=P0414D03.35 PE=4 SV=1
          Length = 448

 Score = 40.0 bits (92), Expect = 0.088
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +2

Query: 197 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEAS----DPEKFQLKKITRRKVLAEGT 364
           AI W+++CCP +  +  + LFR  +VK ++  +E S      E+ +L++++ +  L  G 
Sbjct: 86  AIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPGD 145

Query: 365 ILCLP 379
           IL LP
Sbjct: 146 ILFLP 150


>tr|B8BCS6|B8BCS6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30347 PE=4 SV=1
          Length = 465

 Score = 40.0 bits (92), Expect = 0.088
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = +2

Query: 197 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEAS----DPEKFQLKKITRRKVLAEGT 364
           AI W+++CCP +  +  + LFR  +VK ++  +E S      E+ +L++++ +  L  G 
Sbjct: 86  AIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPGD 145

Query: 365 ILCLP 379
           IL LP
Sbjct: 146 ILFLP 150


>tr|A8MQT1|A8MQT1_HUMAN Putative uncharacterized protein CSAG4
           (Fragment) OS=Homo sapiens GN=CSAG4 PE=4 SV=1
          Length = 114

 Score = 35.0 bits (79), Expect = 2.8
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -3

Query: 214 LQPGYGNQWLALLQANK*AIALRNNRNGREHRPSPIQ*SCWRIFNTRPASESSR 53
           L+ G G  + A   + K +I +R++R  R  RP P   S W   N+R   E+SR
Sbjct: 53  LRNGVGQHYPATPTSQKNSIKMRHSRTTRARRPPPSPVSLWAASNSRARPETSR 106


>tr|Q9LT72|Q9LT72_ARATH Similarity to unknown protein (At3g19440)
           (Putative uncharacterized protein At3g19440)
           OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1
          Length = 477

 Score = 33.9 bits (76), Expect = 6.3
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
 Frame = +2

Query: 110 GRWAMLPPVPVVPKSNGLLVCLE------------KRKPLIAIAWLKQCCPLISQNDAET 253
           G+W  LPP    P  +G  V  +                  A+ W+ +C P + +   + 
Sbjct: 53  GKWLTLPPFS--PTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQK 110

Query: 254 LFRTGQVKIHLGAS-EASDPEKFQLKKITRRKVLAEGTILCLP 379
           LFR  QV+  +  S +  + ++ QLK++  ++ L  G  + LP
Sbjct: 111 LFRLRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLP 153


>tr|A3BVX6|A3BVX6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_027198 PE=4 SV=1
          Length = 473

 Score = 33.9 bits (76), Expect = 6.3
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
 Frame = +2

Query: 197 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEAS----DPEKFQLK--------KITR 340
           AI W+++CCP +  +  + LFR  +VK ++  +E S      E+ +L+        K++ 
Sbjct: 86  AIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRYVTYFCFKVSA 145

Query: 341 RKVLAEGTILCLP 379
           +  L  G IL LP
Sbjct: 146 KDQLMPGDILFLP 158


>tr|B5GR89|B5GR89_STRCL Helicase OS=Streptomyces clavuligerus ATCC
           27064 GN=SSCG_01863 PE=4 SV=1
          Length = 921

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -1

Query: 528 PTFFRAFSTLTEQTSMLQSSSFSEIVSPTSDMVFSLVAARLSFTNCRER 382
           P   R + T T +         SE+VS   + VF  VA RLSF   RER
Sbjct: 181 PAVRRLYMTATPRLVRAGDGDASEVVSMDDEKVFGRVAHRLSFARARER 229