DK955395
Clone id TST39A01NGRL0022_P18
Library
Length 564
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_P18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CGTGAGAAGGGCCCAAATGCAAAAGAGAGGTGTGCACTCTCTTCTTCAGCTAGCGGGAAG
ACTCGGAGGCAGGGCGCGTGTTGAAAATGCGCCAGCACGATCACTGAATGGGCGATGGGC
GATGCTCCCTCCCGTTCCTGTTGTTCCTAAGAGCAATGGCTTACTTGTTTGCTTGGAGAA
GCGCAAGCCACTGATTGCCATAGCCTGGCTGAAGCAGTGCTGCCCGCTAATCTCTCAAAA
TGATGCCGAAACTCTGTTCCGCACAGGCCAGGTGAAAATTCATTTGGGAGCCTCTGAAGC
AAGCGACCCTGAAAAATTTCAACTTAAGAAAATAACTAGGAGGAAGGTTCTTGCAGAAGG
AACGATTCTCTGTTTGCCAACTCGCTCTCTGCAGTTGGTGAATGAAAGCCGTGCAGCAAC
GAGACTAAACACCATATCTGAGGTTGGTGAAACTATTTCAGAAAAGGACGAGGACTGAAG
CATTGATGTTTGCTCAGTCAAAGTGCTGAATGCCCTAAAAAAAGTGGGGGGTGAGTTGAT
TCACGAGGGTACCACGGTAGGTGG
■■Homology search results ■■ -
sp_hit_id A6LPD5
Definition sp|A6LPD5|PROA_CLOB8 Gamma-glutamyl phosphate reductase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
Align length 100
Score (bit) 33.1
E-value 0.97
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955395|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P18, 5'
(564 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A6LPD5|PROA_CLOB8 Gamma-glutamyl phosphate reductase OS=Clost... 33 0.97

>sp|A6LPD5|PROA_CLOB8 Gamma-glutamyl phosphate reductase
OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB
8052) GN=proA PE=3 SV=1
Length = 414

Score = 33.1 bits (74), Expect = 0.97
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = +2

Query: 149 KSNGLLVCLEKRKPLIAIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEASDPEKFQLK 328
+ NGL + +KR PL I + + P ++ + A +TG I G SEA + K +K
Sbjct: 101 RPNGLQIG-QKRVPLGVIGIIYEARPNVTCDAAGLCIKTGNAVILRGGSEAINSNKAIVK 159

Query: 329 KITRRKVLAEGTILCLPTRSLQLVNES--RAATRLNTISE 442
+T + + G LP S+QLV ++ AT + ++E
Sbjct: 160 ALT-KGIERSG----LPKASVQLVEDTSREVATEMMRLNE 194


tr_hit_id B6U2M4
Definition tr|B6U2M4|B6U2M4_MAIZE RNA binding protein OS=Zea mays
Align length 65
Score (bit) 40.4
E-value 0.067
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955395|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_P18, 5'
(564 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6U2M4|B6U2M4_MAIZE RNA binding protein OS=Zea mays PE=2 SV=1 40 0.067
tr|Q69K07|Q69K07_ORYSJ Os09g0103500 protein OS=Oryza sativa subs... 40 0.088
tr|B8BCS6|B8BCS6_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.088
tr|A8MQT1|A8MQT1_HUMAN Putative uncharacterized protein CSAG4 (F... 35 2.8
tr|Q9LT72|Q9LT72_ARATH Similarity to unknown protein (At3g19440)... 34 6.3
tr|A3BVX6|A3BVX6_ORYSJ Putative uncharacterized protein OS=Oryza... 34 6.3
tr|B5GR89|B5GR89_STRCL Helicase OS=Streptomyces clavuligerus ATC... 33 8.3

>tr|B6U2M4|B6U2M4_MAIZE RNA binding protein OS=Zea mays PE=2 SV=1
Length = 439

Score = 40.4 bits (93), Expect = 0.067
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +2

Query: 197 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEASDPE----KFQLKKITRRKVLAEGT 364
AI W++ CCP + + + LFR +VK +L ++ S + + +L++++ + L G
Sbjct: 83 AIRWVRHCCPHVPASLVQKLFRLRKVKKNLVTADTSSTDSITLQLRLRRVSAKDELVPGD 142

Query: 365 ILCLP 379
IL LP
Sbjct: 143 ILFLP 147


>tr|Q69K07|Q69K07_ORYSJ Os09g0103500 protein OS=Oryza sativa subsp.
japonica GN=P0414D03.35 PE=4 SV=1
Length = 448

Score = 40.0 bits (92), Expect = 0.088
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +2

Query: 197 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEAS----DPEKFQLKKITRRKVLAEGT 364
AI W+++CCP + + + LFR +VK ++ +E S E+ +L++++ + L G
Sbjct: 86 AIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPGD 145

Query: 365 ILCLP 379
IL LP
Sbjct: 146 ILFLP 150


>tr|B8BCS6|B8BCS6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_30347 PE=4 SV=1
Length = 465

Score = 40.0 bits (92), Expect = 0.088
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +2

Query: 197 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEAS----DPEKFQLKKITRRKVLAEGT 364
AI W+++CCP + + + LFR +VK ++ +E S E+ +L++++ + L G
Sbjct: 86 AIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPGD 145

Query: 365 ILCLP 379
IL LP
Sbjct: 146 ILFLP 150


>tr|A8MQT1|A8MQT1_HUMAN Putative uncharacterized protein CSAG4
(Fragment) OS=Homo sapiens GN=CSAG4 PE=4 SV=1
Length = 114

Score = 35.0 bits (79), Expect = 2.8
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -3

Query: 214 LQPGYGNQWLALLQANK*AIALRNNRNGREHRPSPIQ*SCWRIFNTRPASESSR 53
L+ G G + A + K +I +R++R R RP P S W N+R E+SR
Sbjct: 53 LRNGVGQHYPATPTSQKNSIKMRHSRTTRARRPPPSPVSLWAASNSRARPETSR 106


>tr|Q9LT72|Q9LT72_ARATH Similarity to unknown protein (At3g19440)
(Putative uncharacterized protein At3g19440)
OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1
Length = 477

Score = 33.9 bits (76), Expect = 6.3
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Frame = +2

Query: 110 GRWAMLPPVPVVPKSNGLLVCLE------------KRKPLIAIAWLKQCCPLISQNDAET 253
G+W LPP P +G V + A+ W+ +C P + + +
Sbjct: 53 GKWLTLPPFS--PTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQK 110

Query: 254 LFRTGQVKIHLGAS-EASDPEKFQLKKITRRKVLAEGTILCLP 379
LFR QV+ + S + + ++ QLK++ ++ L G + LP
Sbjct: 111 LFRLRQVRREMSMSVDGDELQRSQLKRVAAKESLNVGDRIYLP 153


>tr|A3BVX6|A3BVX6_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_027198 PE=4 SV=1
Length = 473

Score = 33.9 bits (76), Expect = 6.3
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Frame = +2

Query: 197 AIAWLKQCCPLISQNDAETLFRTGQVKIHLGASEAS----DPEKFQLK--------KITR 340
AI W+++CCP + + + LFR +VK ++ +E S E+ +L+ K++
Sbjct: 86 AIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRYVTYFCFKVSA 145

Query: 341 RKVLAEGTILCLP 379
+ L G IL LP
Sbjct: 146 KDQLMPGDILFLP 158


>tr|B5GR89|B5GR89_STRCL Helicase OS=Streptomyces clavuligerus ATCC
27064 GN=SSCG_01863 PE=4 SV=1
Length = 921

Score = 33.5 bits (75), Expect = 8.3
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1

Query: 528 PTFFRAFSTLTEQTSMLQSSSFSEIVSPTSDMVFSLVAARLSFTNCRER 382
P R + T T + SE+VS + VF VA RLSF RER
Sbjct: 181 PAVRRLYMTATPRLVRAGDGDASEVVSMDDEKVFGRVAHRLSFARARER 229