DK955409 |
Clone id |
TST39A01NGRL0023_A08 |
Library |
TST39 |
Length |
578 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_A08. 5' end sequence. |
Accession |
DK955409 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL156Contig1 |
Sequence |
GGAACACCGAGGAGCGGCGCAGGCATGGTGCTCAAGACTGAAGTGTGCCGGTTTAGCGGC TCAAAGATTTACCCTGGGAGGGGCATCCGCTTTGTCAGAGGAGATTCTCAAGTTTTCTTG TTTTTGAATTCAAAATGCAAAAGGTACTTCCACAATCGTCTGAAACCATCTAAGCTTACG TGGACTGCCCTTTACCGCAAGCAGCACAAGAAGGATATACATGCTGAGACTGTGAAAAGG AGGAGAAAGACTACCAGCAAGCCCTACTCTCGCTCGATTGTTGGTGCTTCACTTGAGGTG ATTCAGAAGAAACGGGCAGAAAAGACTGAAGTTAGAGCTGCTGCTCGTGAAGCTGCGCTA AGGGAGATCAAGGAGCGAATCAAGAAAACCAAGGATGAGAAGAAGGCAAAGAAGGCTGAA CTAGTGTCTAAGTCCTCCAAAGCTGCCCCCAAAGGTGCTATGGGTAAAGGGGCAATGCCC AAAGGTCCTAAGCTTGGTGGTGGTGGTGGGAAACGATGAAGTGTACGCCGTAGCCTTTGA CACTGAACACAGGGTCTCTTTTACACAAAATGATTTTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P50888 |
Definition |
sp|P50888|RL24_HORVU 60S ribosomal protein L24 OS=Hordeum vulgare |
Align length |
94 |
Score (bit) |
172.0 |
E-value |
1.0e-42 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LQH6 |
Definition |
tr|B8LQH6|B8LQH6_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
94 |
Score (bit) |
179.0 |
E-value |
1.0e-43 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955409|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_A08, 5' (578 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LQH6|B8LQH6_PICSI Putative uncharacterized protein OS=Picea... 179 1e-43 tr|B3TM46|B3TM46_ELAGV 60S ribosomal protein L24 OS=Elaeis guine... 177 3e-43 tr|B3TLK8|B3TLK8_ELAGV 60S ribosomal protein L24 OS=Elaeis guine... 177 4e-43 tr|Q75KZ3|Q75KZ3_ORYSJ Os05g0486700 protein OS=Oryza sativa subs... 177 5e-43 tr|A2Y5X8|A2Y5X8_ORYSI Putative uncharacterized protein OS=Oryza... 177 5e-43 tr|B8B8G9|B8B8G9_ORYSI Putative uncharacterized protein OS=Oryza... 176 6e-43 tr|A9SBP8|A9SBP8_PHYPA Predicted protein OS=Physcomitrella paten... 176 8e-43 tr|Q5N754|Q5N754_ORYSJ cDNA clone:001-018-A11, full insert seque... 176 1e-42 tr|A9PHF8|A9PHF8_POPTR Putative uncharacterized protein OS=Popul... 175 1e-42 tr|B6TLK1|B6TLK1_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=... 175 2e-42 tr|B6T6E3|B6T6E3_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=... 175 2e-42 tr|B6T1G6|B6T1G6_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=... 175 2e-42 tr|B4FFR7|B4FFR7_MAIZE Putative uncharacterized protein OS=Zea m... 175 2e-42 tr|A9RF19|A9RF19_PHYPA Predicted protein OS=Physcomitrella paten... 175 2e-42 tr|A9SZ60|A9SZ60_PHYPA Predicted protein OS=Physcomitrella paten... 173 5e-42 tr|B6TTC4|B6TTC4_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=... 173 7e-42 tr|A9SFW0|A9SFW0_PHYPA Predicted protein OS=Physcomitrella paten... 173 7e-42 tr|A9SAK6|A9SAK6_PHYPA Predicted protein OS=Physcomitrella paten... 173 7e-42 tr|A9P8N0|A9P8N0_POPTR Putative uncharacterized protein OS=Popul... 173 7e-42 tr|A9P8J6|A9P8J6_POPTR Putative uncharacterized protein OS=Popul... 172 1e-41 tr|Q1SN35|Q1SN35_MEDTR Ribosomal protein L24E OS=Medicago trunca... 170 5e-41 tr|A7PPN3|A7PPN3_VITVI Chromosome chr8 scaffold_23, whole genome... 170 6e-41 tr|Q8L3Y6|Q8L3Y6_ORYSJ Putative 60S ribosomal protein L24 OS=Ory... 169 8e-41 tr|B8ABA2|B8ABA2_ORYSI Putative uncharacterized protein OS=Oryza... 169 8e-41 tr|Q0D7Q0|Q0D7Q0_ORYSJ Os07g0224000 protein OS=Oryza sativa subs... 169 1e-40 tr|B7FGN9|B7FGN9_MEDTR Putative uncharacterized protein OS=Medic... 169 1e-40 tr|A2ZYY6|A2ZYY6_ORYSJ Putative uncharacterized protein OS=Oryza... 169 1e-40 tr|Q2XPV7|Q2XPV7_SOLTU Ribosomal protein L24-like protein OS=Sol... 168 2e-40 tr|B7FN60|B7FN60_MEDTR Putative uncharacterized protein OS=Medic... 168 2e-40 tr|A7QZS6|A7QZS6_VITVI Chromosome chr13 scaffold_286, whole geno... 167 4e-40
>tr|B8LQH6|B8LQH6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 164
Score = 179 bits (454), Expect = 1e-43 Identities = 83/94 (88%), Positives = 91/94 (96%) Frame = +1
Query: 25 MVLKTEVCRFSGSKIYPGRGIRFVRGDSQVFLFLNSKCKRYFHNRLKPSKLTWTALYRKQ 204 MVLKTE+CRFSG+KIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKPSKLTWTA+YRKQ Sbjct: 1 MVLKTEICRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
Query: 205 HKKDIHAETVKRRRKTTSKPYSRSIVGASLEVIQ 306 HKKDIHAE VK+RR+TT+KPYSRSIVGASLEVIQ Sbjct: 61 HKKDIHAEQVKKRRRTTNKPYSRSIVGASLEVIQ 94
>tr|B3TM46|B3TM46_ELAGV 60S ribosomal protein L24 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 163
Score = 177 bits (450), Expect = 3e-43 Identities = 83/94 (88%), Positives = 90/94 (95%) Frame = +1
Query: 25 MVLKTEVCRFSGSKIYPGRGIRFVRGDSQVFLFLNSKCKRYFHNRLKPSKLTWTALYRKQ 204 MVLKTE+CRFSG+KIYPG+GIRFVR DSQVFLF NSKCKRYFHNRLKPSKLTWTA+YRKQ Sbjct: 1 MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
Query: 205 HKKDIHAETVKRRRKTTSKPYSRSIVGASLEVIQ 306 HKKDIHAE VK+RR+TT KPYSRSIVGA+LEVIQ Sbjct: 61 HKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQ 94
>tr|B3TLK8|B3TLK8_ELAGV 60S ribosomal protein L24 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 163
Score = 177 bits (449), Expect = 4e-43 Identities = 81/94 (86%), Positives = 91/94 (96%) Frame = +1
Query: 25 MVLKTEVCRFSGSKIYPGRGIRFVRGDSQVFLFLNSKCKRYFHNRLKPSKLTWTALYRKQ 204 MVLKTE+CRFSG+KIYPG+GIRFVR DSQVFLF NSKCKRYFHNRLKP+KLTWTA+YRKQ Sbjct: 1 MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQ 60
Query: 205 HKKDIHAETVKRRRKTTSKPYSRSIVGASLEVIQ 306 HKKD+HAET+K+RR+TT KPYSRSIVGA+LEVIQ Sbjct: 61 HKKDLHAETIKKRRRTTKKPYSRSIVGATLEVIQ 94
>tr|Q75KZ3|Q75KZ3_ORYSJ Os05g0486700 protein OS=Oryza sativa subsp. japonica GN=OJ1004_E02.9 PE=2 SV=1 Length = 161
Score = 177 bits (448), Expect = 5e-43 Identities = 82/94 (87%), Positives = 89/94 (94%) Frame = +1
Query: 25 MVLKTEVCRFSGSKIYPGRGIRFVRGDSQVFLFLNSKCKRYFHNRLKPSKLTWTALYRKQ 204 MVLKTE+CRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKP+KLTWTA+YRKQ Sbjct: 1 MVLKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQ 60
Query: 205 HKKDIHAETVKRRRKTTSKPYSRSIVGASLEVIQ 306 HKKDIHAE VK+RR+TT KPYSRSIVGASLEVIQ Sbjct: 61 HKKDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQ 94
>tr|A2Y5X8|A2Y5X8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20403 PE=4 SV=1 Length = 161
Score = 177 bits (448), Expect = 5e-43 Identities = 82/94 (87%), Positives = 89/94 (94%) Frame = +1
Query: 25 MVLKTEVCRFSGSKIYPGRGIRFVRGDSQVFLFLNSKCKRYFHNRLKPSKLTWTALYRKQ 204 MVLKTE+CRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKP+KLTWTA+YRKQ Sbjct: 1 MVLKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQ 60
Query: 205 HKKDIHAETVKRRRKTTSKPYSRSIVGASLEVIQ 306 HKKDIHAE VK+RR+TT KPYSRSIVGASLEVIQ Sbjct: 61 HKKDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQ 94
>tr|B8B8G9|B8B8G9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_25404 PE=4 SV=1 Length = 227
Score = 176 bits (447), Expect = 6e-43 Identities = 82/96 (85%), Positives = 91/96 (94%) Frame = +1
Query: 19 AGMVLKTEVCRFSGSKIYPGRGIRFVRGDSQVFLFLNSKCKRYFHNRLKPSKLTWTALYR 198 A MVLKTE+CRFSG+KIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKP+KLTWTA+YR Sbjct: 65 AKMVLKTELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYR 124
Query: 199 KQHKKDIHAETVKRRRKTTSKPYSRSIVGASLEVIQ 306 KQHKKDIHAE VK+RR+TT KPYSRSIVGA+LEVIQ Sbjct: 125 KQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQ 160
>tr|A9SBP8|A9SBP8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163991 PE=4 SV=1 Length = 161
Score = 176 bits (446), Expect = 8e-43 Identities = 82/94 (87%), Positives = 91/94 (96%) Frame = +1
Query: 25 MVLKTEVCRFSGSKIYPGRGIRFVRGDSQVFLFLNSKCKRYFHNRLKPSKLTWTALYRKQ 204 MVLKTEVCRFSG+KIYPGRGIRF+R DSQVFLFLNSKCKRYFHNRLKP+KL+WTAL+RKQ Sbjct: 1 MVLKTEVCRFSGAKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNRLKPAKLSWTALFRKQ 60
Query: 205 HKKDIHAETVKRRRKTTSKPYSRSIVGASLEVIQ 306 HKKD+H TVK+RR+TT+KPYSRSIVGASLEVIQ Sbjct: 61 HKKDLHDTTVKKRRRTTNKPYSRSIVGASLEVIQ 94
>tr|Q5N754|Q5N754_ORYSJ cDNA clone:001-018-A11, full insert sequence OS=Oryza sativa subsp. japonica GN=OSJNBa0085D07.41 PE=2 SV=1 Length = 162
Score = 176 bits (445), Expect = 1e-42 Identities = 81/94 (86%), Positives = 89/94 (94%) Frame = +1
Query: 25 MVLKTEVCRFSGSKIYPGRGIRFVRGDSQVFLFLNSKCKRYFHNRLKPSKLTWTALYRKQ 204 MVLKTE+CRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKP+KLTWTA+YRKQ Sbjct: 1 MVLKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQ 60
Query: 205 HKKDIHAETVKRRRKTTSKPYSRSIVGASLEVIQ 306 HKKDIHAE VK+RR+TT KPYSRSIVGA+LEVIQ Sbjct: 61 HKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQ 94
>tr|A9PHF8|A9PHF8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 163
Score = 175 bits (444), Expect = 1e-42 Identities = 82/94 (87%), Positives = 90/94 (95%) Frame = +1
Query: 25 MVLKTEVCRFSGSKIYPGRGIRFVRGDSQVFLFLNSKCKRYFHNRLKPSKLTWTALYRKQ 204 MVLKTE+CRFSG+KIYPGRGIRF+R DSQVFLF NSKCKRYFHN+LKPSKLTWTA+YRKQ Sbjct: 1 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQ 60
Query: 205 HKKDIHAETVKRRRKTTSKPYSRSIVGASLEVIQ 306 HKKDI AETVK+RR+TT KPYSRSIVGA+LEVIQ Sbjct: 61 HKKDIAAETVKKRRRTTKKPYSRSIVGATLEVIQ 94
>tr|B6TLK1|B6TLK1_MAIZE 60S ribosomal protein L24 OS=Zea mays PE=2 SV=1 Length = 161
Score = 175 bits (443), Expect = 2e-42 Identities = 81/94 (86%), Positives = 88/94 (93%) Frame = +1
Query: 25 MVLKTEVCRFSGSKIYPGRGIRFVRGDSQVFLFLNSKCKRYFHNRLKPSKLTWTALYRKQ 204 MVLKTE+CRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKP+KLTWTA+YRKQ Sbjct: 1 MVLKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQ 60
Query: 205 HKKDIHAETVKRRRKTTSKPYSRSIVGASLEVIQ 306 HKKDIHAE VK+RR+ T KPYSRSIVGASLEVIQ Sbjct: 61 HKKDIHAEAVKKRRRATKKPYSRSIVGASLEVIQ 94
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