DK955411 |
Clone id |
TST39A01NGRL0023_A10 |
Library |
TST39 |
Length |
458 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_A10. 5' end sequence. |
Accession |
DK955411 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GGAAGGAAGGGAGGACACAGGATCGAGCAGCTTGGCTATGGTGGCGTTGTGAGTGTTAGG GTTTCGTTTTCTGCGTTCACAATCAAGGTAGTGGGCTTTCCGTCCTTCTGCTTGGATTTT TAAGGCTCCGTGTCTTGCGTTTTTCTGCATAATTTCTCGAGACGTTTTTCCCGTCTGTGC TATGCTCTGCTTCTGTGAGGGTTAAGGCATGGAGCGTGTGTACTCTGGTGGTTGAGATGT AGCCTTGGTCACCGCATCTGCGCAAATTAAGGGTCTTCTGTTCTTTTGTGGTTGTGTTTC TTCCTTCGCCATGGACGAGGCGTGGGAACGTGCTGTCGAGGCTGCCCGTGGCGGCGAGGA CTTTGAAGCAGTTCGCTCTCTTACTCTGGATGGCGCAATCAAGTGCTCGCAGGGCCGGCT GCCAGCCGCCGCTCTTCTCGAGCAATTCTCACAGCTTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SCQ7 |
Definition |
sp|Q9SCQ7|AN32_ARATH Probable acidic leucine-rich nuclear phosphoprotein 32-related protein OS=Arabidopsis thaliana |
Align length |
50 |
Score (bit) |
62.8 |
E-value |
7.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955411|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_A10, 5' (458 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9SCQ7|AN32_ARATH Probable acidic leucine-rich nuclear phosph... 63 7e-10 sp|Q6YSF3|AN321_ORYSJ Acidic leucine-rich nuclear phosphoprotein... 61 2e-09 sp|Q7Y180|AN322_ORYSJ Acidic leucine-rich nuclear phosphoprotein... 51 3e-06 sp|Q96GW7|PGCB_HUMAN Brevican core protein OS=Homo sapiens GN=BC... 33 0.45 sp|Q2M1K6|S39AD_RAT Zinc transporter ZIP13 OS=Rattus norvegicus ... 32 1.0 sp|Q9QXX8|NUFP1_MOUSE Nuclear fragile X mental retardation-inter... 32 1.7 sp|Q8P631|TRMB_XANCP tRNA (guanine-N(7)-)-methyltransferase OS=X... 31 2.3 sp|Q4UXY5|TRMB_XANC8 tRNA (guanine-N(7)-)-methyltransferase OS=X... 31 2.3 sp|Q6AZY7|SCAR3_HUMAN Scavenger receptor class A member 3 OS=Hom... 31 2.3 sp|Q8BZH0|S39AD_MOUSE Zinc transporter ZIP13 OS=Mus musculus GN=... 31 2.3 sp|Q5GXE4|TRMB_XANOR tRNA (guanine-N(7)-)-methyltransferase OS=X... 31 2.9 sp|Q2P0J4|TRMB_XANOM tRNA (guanine-N(7)-)-methyltransferase OS=X... 31 2.9 sp|Q3BQ14|TRMB_XANC5 tRNA (guanine-N(7)-)-methyltransferase OS=X... 31 2.9 sp|Q8PHF4|TRMB_XANAC tRNA (guanine-N(7)-)-methyltransferase OS=X... 31 2.9 sp|Q4KLH3|OGRL1_RAT Opioid growth factor receptor-like protein 1... 31 2.9 sp|Q0IHV1|INF2_XENTR Inverted formin-2 OS=Xenopus tropicalis GN=... 31 2.9 sp|P78956|RE114_SACPA Meiotic recombination protein REC114 OS=Sa... 30 3.8 sp|Q08226|CRT10_YEAST Protein CRT10 OS=Saccharomyces cerevisiae ... 30 3.8 sp|Q65SY9|NORM_MANSM Probable multidrug resistance protein norM ... 30 5.0 sp|Q9UUG0|FAS1_SCHPO Fatty acid synthase subunit beta OS=Schizos... 30 5.0 sp|Q99KF0|CAR14_MOUSE Caspase recruitment domain-containing prot... 30 5.0 sp|Q9HCM3|K1549_HUMAN UPF0606 protein KIAA1549 OS=Homo sapiens G... 30 6.6 sp|O94986|CE152_HUMAN Centrosomal protein of 152 kDa OS=Homo sap... 30 6.6 sp|Q2KYW5|TRMB_BORA1 tRNA (guanine-N(7)-)-methyltransferase OS=B... 29 8.6 sp|Q5XG24|RNPS1_XENLA RNA-binding protein with serine-rich domai... 29 8.6 sp|Q9Z1W6|LYRIC_RAT Protein LYRIC OS=Rattus norvegicus GN=Mtdh P... 29 8.6 sp|Q86UE4|LYRIC_HUMAN Protein LYRIC OS=Homo sapiens GN=MTDH PE=1... 29 8.6 sp|P32768|FLO1_YEAST Flocculation protein FLO1 OS=Saccharomyces ... 29 8.6
>sp|Q9SCQ7|AN32_ARATH Probable acidic leucine-rich nuclear phosphoprotein 32-related protein OS=Arabidopsis thaliana GN=At3g50690 PE=3 SV=1 Length = 447
Score = 62.8 bits (151), Expect = 7e-10 Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 1/50 (2%) Frame = +2
Query: 311 MDEAWERAVEAARGGE-DFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 MDE WERAVEAA G+ D A R+LTLDGA+KC QGRLP ++LE+F L Sbjct: 1 MDEIWERAVEAALDGQTDRLATRTLTLDGAVKCVQGRLPPPSVLEKFQNL 50
>sp|Q6YSF3|AN321_ORYSJ Acidic leucine-rich nuclear phosphoprotein 32-related protein 1 OS=Oryza sativa subsp. japonica GN=Os07g0607800 PE=2 SV=1 Length = 476
Score = 61.2 bits (147), Expect = 2e-09 Identities = 32/52 (61%), Positives = 36/52 (69%), Gaps = 3/52 (5%) Frame = +2
Query: 311 MDEAWERAVEAA---RGGEDFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 MDEAWERAVEAA G RSLTLDGA+KC GRLPAA +LE++ L Sbjct: 1 MDEAWERAVEAALQAAGEGSSSPARSLTLDGAVKCLHGRLPAAEILERYQSL 52
>sp|Q7Y180|AN322_ORYSJ Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Oryza sativa subsp. japonica GN=Os03g0668900 PE=2 SV=1 Length = 272
Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/48 (50%), Positives = 33/48 (68%) Frame = +2
Query: 314 DEAWERAVEAARGGEDFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 D AWERA+ AA F A ++LTLDGA+K + GRLP+ +LL ++ L Sbjct: 11 DAAWERAIAAAVKNAPFSAPKTLTLDGAVKSTTGRLPSPSLLGRYPSL 58
>sp|Q96GW7|PGCB_HUMAN Brevican core protein OS=Homo sapiens GN=BCAN PE=1 SV=2 Length = 911
Score = 33.5 bits (75), Expect = 0.45 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%) Frame = -1
Query: 443 AREERRLAAGPAST*LRH-----PE*ESELLQSPRRHGQPRQHVPTPR 315 A +E L+ PA L+ P+ ESE + PR HG P + +PTPR Sbjct: 500 AAQEESLSQAPARAVLQPGASPLPDGESEASRPPRVHGPPTETLPTPR 547
>sp|Q2M1K6|S39AD_RAT Zinc transporter ZIP13 OS=Rattus norvegicus GN=Slc39a13 PE=2 SV=1 Length = 361
Score = 32.3 bits (72), Expect = 1.0 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%) Frame = -2
Query: 448 ELLEKSGGWQPALRALD----CAIQSKRANCFKVLAATGSLDS 332 ELLE++GG QPALR+L C + SK + + L + LD+ Sbjct: 25 ELLERAGGSQPALRSLGAAAACRLDSKESESWGALLSGERLDT 67
>sp|Q9QXX8|NUFP1_MOUSE Nuclear fragile X mental retardation-interacting protein 1 OS=Mus musculus GN=Nufip1 PE=1 SV=1 Length = 484
Score = 31.6 bits (70), Expect = 1.7 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = -3
Query: 213 SMP*PSQKQSIAQTGKTSREIMQKNARHGALKIQAEGRKAHYLDCERRKRNPNTHNATIA 34 S P S KQ++ TG+T +N R+G KI + +K+H P TH+ + Sbjct: 389 SSPPKSPKQNVQTTGRTVSRSKWENQRNGLRKISLKRKKSHC----HPLFEPRTHHPYLL 444
Query: 33 KLL 25 ++L Sbjct: 445 EML 447
>sp|Q8P631|TRMB_XANCP tRNA (guanine-N(7)-)-methyltransferase OS=Xanthomonas campestris pv. campestris GN=trmB PE=3 SV=1 Length = 261
Score = 31.2 bits (69), Expect = 2.3 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1
Query: 320 PRPWRRKKHNHKRTEDP*FAQM 255 P PW +K+HN +R P FAQ+ Sbjct: 149 PDPWHKKRHNKRRLVQPAFAQL 170
>sp|Q4UXY5|TRMB_XANC8 tRNA (guanine-N(7)-)-methyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=trmB PE=3 SV=1 Length = 261
Score = 31.2 bits (69), Expect = 2.3 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1
Query: 320 PRPWRRKKHNHKRTEDP*FAQM 255 P PW +K+HN +R P FAQ+ Sbjct: 149 PDPWHKKRHNKRRLVQPAFAQL 170
>sp|Q6AZY7|SCAR3_HUMAN Scavenger receptor class A member 3 OS=Homo sapiens GN=SCARA3 PE=2 SV=1 Length = 606
Score = 31.2 bits (69), Expect = 2.3 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 11/103 (10%) Frame = -2
Query: 427 GWQPALRALDCAIQSKRANCFKVLAATGSLDSTFPRL---VHGEGRNTTTKEQKTLNLRR 257 GWQ LD +++ C+ V AA ++ T + +HG R T +++TL L++ Sbjct: 194 GWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRKT---DEETLTLQK 250
Query: 256 CGD--QGY------ISTTRVHTLHALTLTEAEHSTDGKNVSRN 152 Q Y + TT T A+ +A + +S+N Sbjct: 251 IVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQN 293
>sp|Q8BZH0|S39AD_MOUSE Zinc transporter ZIP13 OS=Mus musculus GN=Slc39a13 PE=2 SV=1 Length = 361
Score = 31.2 bits (69), Expect = 2.3 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%) Frame = -2
Query: 448 ELLEKSGGWQPALRALD----CAIQSKRANCFKVLAATGSLDS 332 ELLE++GG QPALR+L C + +K + + L + LD+ Sbjct: 25 ELLERAGGSQPALRSLGAAAACRLDNKESESWGALLSGERLDT 67
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7FIV4 |
Definition |
tr|B7FIV4|B7FIV4_MEDTR Putative uncharacterized protein OS=Medicago truncatula |
Align length |
52 |
Score (bit) |
62.8 |
E-value |
8.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955411|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_A10, 5' (458 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B7FIV4|B7FIV4_MEDTR Putative uncharacterized protein OS=Medic... 63 8e-09 tr|A7PUX1|A7PUX1_VITVI Chromosome chr4 scaffold_32, whole genome... 63 8e-09 tr|B8B8C2|B8B8C2_ORYSI Putative uncharacterized protein OS=Oryza... 61 2e-08 tr|A9NVZ4|A9NVZ4_PICSI Putative uncharacterized protein OS=Picea... 61 2e-08 tr|A3BM15|A3BM15_ORYSJ Putative uncharacterized protein OS=Oryza... 61 2e-08 tr|A7P938|A7P938_VITVI Chromosome chr3 scaffold_8, whole genome ... 59 1e-07 tr|A5BV19|A5BV19_VITVI Putative uncharacterized protein OS=Vitis... 59 1e-07 tr|A9U096|A9U096_PHYPA Predicted protein OS=Physcomitrella paten... 57 6e-07 tr|A9SU98|A9SU98_PHYPA Predicted protein OS=Physcomitrella paten... 55 1e-06 tr|A9SU96|A9SU96_PHYPA Predicted protein (Fragment) OS=Physcomit... 55 1e-06 tr|A3AL74|A3AL74_ORYSJ cDNA clone:002-142-D06, full insert seque... 51 3e-05 tr|A2XKG1|A2XKG1_ORYSI Putative uncharacterized protein OS=Oryza... 51 3e-05 tr|B6UHU4|B6UHU4_MAIZE Acidic leucine-rich nuclear phosphoprotei... 50 4e-05 tr|B6UIQ1|B6UIQ1_MAIZE Putative uncharacterized protein OS=Zea m... 49 1e-04 tr|B4FCJ2|B4FCJ2_MAIZE Putative uncharacterized protein OS=Zea m... 49 1e-04 tr|B6UH95|B6UH95_MAIZE Acidic leucine-rich nuclear phosphoprotei... 47 4e-04 tr|B6LIT2|B6LIT2_BRAFL Putative uncharacterized protein OS=Branc... 35 1.9 tr|Q0ISC2|Q0ISC2_ORYSJ Os11g0538400 protein (Fragment) OS=Oryza ... 35 2.4 tr|B6L7X4|B6L7X4_BRAFL Putative uncharacterized protein OS=Branc... 35 2.4 tr|B6L7X6|B6L7X6_BRAFL Putative uncharacterized protein OS=Branc... 34 3.2 tr|A8K144|A8K144_HUMAN cDNA FLJ76746, highly similar to Homo sap... 34 3.2 tr|B3SBM5|B3SBM5_TRIAD Putative uncharacterized protein OS=Trich... 34 4.1 tr|A6PM76|A6PM76_9BACT Alpha-L-rhamnosidase OS=Victivallis vaden... 33 5.4 tr|B3NEA9|B3NEA9_DROER GG13223 OS=Drosophila erecta GN=GG13223 P... 33 5.4 tr|Q8IWX2|Q8IWX2_HUMAN Hyaluronan binding protein (Fragment) OS=... 33 5.4 tr|Q5T3I5|Q5T3I5_HUMAN Brevican OS=Homo sapiens GN=BCAN PE=2 SV=1 33 5.4 tr|Q5SZ10|Q5SZ10_HUMAN Brevican OS=Homo sapiens GN=BCAN PE=2 SV=1 33 5.4 tr|Q59F90|Q59F90_HUMAN Brevican isoform 1 variant (Fragment) OS=... 33 5.4 tr|Q2USR7|Q2USR7_ASPOR Predicted transporter OS=Aspergillus oryz... 33 5.4 tr|B8MWW7|B8MWW7_ASPFL MFS monosaccharide transporter, putative ... 33 5.4
>tr|B7FIV4|B7FIV4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 135
Score = 62.8 bits (151), Expect = 8e-09 Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 1/52 (1%) Frame = +2
Query: 305 FAMDEAWERAVEAARGGE-DFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 + MDE WE+AVE A GE D + R+LTLDGA+KC QGRLP +LLE+F L Sbjct: 7 YLMDEIWEKAVETALEGEKDHVSARTLTLDGAVKCVQGRLPPPSLLERFQNL 58
>tr|A7PUX1|A7PUX1_VITVI Chromosome chr4 scaffold_32, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024960001 PE=4 SV=1 Length = 303
Score = 62.8 bits (151), Expect = 8e-09 Identities = 31/50 (62%), Positives = 37/50 (74%), Gaps = 1/50 (2%) Frame = +2
Query: 311 MDEAWERAVEAARGGE-DFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 MDE WERAVE A G+ D +VR+LTLDGA+KC GRLP +LLE+F L Sbjct: 1 MDEIWERAVETALNGQTDHASVRTLTLDGAVKCVHGRLPPPSLLEKFQNL 50
>tr|B8B8C2|B8B8C2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_26814 PE=4 SV=1 Length = 459
Score = 61.2 bits (147), Expect = 2e-08 Identities = 32/52 (61%), Positives = 36/52 (69%), Gaps = 3/52 (5%) Frame = +2
Query: 311 MDEAWERAVEAA---RGGEDFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 MDEAWERAVEAA G RSLTLDGA+KC GRLPAA +LE++ L Sbjct: 1 MDEAWERAVEAALQAAGEGSSSPARSLTLDGAVKCLHGRLPAAEILERYQSL 52
>tr|A9NVZ4|A9NVZ4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 421
Score = 61.2 bits (147), Expect = 2e-08 Identities = 30/49 (61%), Positives = 39/49 (79%) Frame = +2
Query: 311 MDEAWERAVEAARGGEDFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 M++AWE+AVEAARGG++ + SLTLDGA+K + RLP AAL EQF +L Sbjct: 1 MEKAWEKAVEAARGGQNPSEIVSLTLDGALKGTPCRLPPAALFEQFPRL 49
>tr|A3BM15|A3BM15_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_024087 PE=4 SV=1 Length = 476
Score = 61.2 bits (147), Expect = 2e-08 Identities = 32/52 (61%), Positives = 36/52 (69%), Gaps = 3/52 (5%) Frame = +2
Query: 311 MDEAWERAVEAA---RGGEDFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 MDEAWERAVEAA G RSLTLDGA+KC GRLPAA +LE++ L Sbjct: 1 MDEAWERAVEAALQAAGEGSSSPARSLTLDGAVKCLHGRLPAAEILERYQSL 52
>tr|A7P938|A7P938_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036413001 PE=4 SV=1 Length = 224
Score = 58.9 bits (141), Expect = 1e-07 Identities = 31/50 (62%), Positives = 34/50 (68%), Gaps = 1/50 (2%) Frame = +2
Query: 311 MDEAWERAVEAARGGE-DFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 MDE WERAVE A G+ D VRSLTLDGA+KC G LP LLE+F L Sbjct: 1 MDEIWERAVETAIDGKTDASPVRSLTLDGAVKCYSGGLPPPTLLEKFQNL 50
>tr|A5BV19|A5BV19_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013705 PE=4 SV=1 Length = 344
Score = 58.9 bits (141), Expect = 1e-07 Identities = 31/50 (62%), Positives = 34/50 (68%), Gaps = 1/50 (2%) Frame = +2
Query: 311 MDEAWERAVEAARGGE-DFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 MDE WERAVE A G+ D VRSLTLDGA+KC G LP LLE+F L Sbjct: 1 MDEIWERAVETAIDGKTDASPVRSLTLDGAVKCYSGGLPPPTLLEKFQNL 50
>tr|A9U096|A9U096_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_153718 PE=4 SV=1 Length = 364
Score = 56.6 bits (135), Expect = 6e-07 Identities = 29/50 (58%), Positives = 35/50 (70%), Gaps = 1/50 (2%) Frame = +2
Query: 311 MDE-AWERAVEAARGGEDFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 MDE AWERAVE AR GE V +LTLDG +KC+QG+L + + FSQL Sbjct: 4 MDEGAWERAVEQARQGEPASQVEALTLDGVVKCAQGKLLKSKVFASFSQL 53
>tr|A9SU98|A9SU98_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_188462 PE=4 SV=1 Length = 344
Score = 55.5 bits (132), Expect = 1e-06 Identities = 27/48 (56%), Positives = 33/48 (68%) Frame = +2
Query: 314 DEAWERAVEAARGGEDFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 D AWERAVE A G+ V SLTLDG +KC+QG+LP + +L SQL Sbjct: 6 DAAWERAVEQACHGQAAFQVESLTLDGVVKCAQGKLPKSKVLASLSQL 53
>tr|A9SU96|A9SU96_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_135388 PE=4 SV=1 Length = 278
Score = 55.5 bits (132), Expect = 1e-06 Identities = 27/48 (56%), Positives = 33/48 (68%) Frame = +2
Query: 314 DEAWERAVEAARGGEDFEAVRSLTLDGAIKCSQGRLPAAALLEQFSQL 457 D AWERAVE A G+ V SLTLDG +KC+QG+LP + +L SQL Sbjct: 6 DAAWERAVEQACHGQAAFQVESLTLDGVVKCAQGKLPKSKVLASLSQL 53
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