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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955428
Clone id TST39A01NGRL0023_B04
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_B04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATTCTCGGTGCCGGAACAGGCGTTGTGCTTCATGGCTGGTGCCAATTCAATTTTCACCGG
GGAGAAACTCCTGACCACTCCAAACAATGACTTTGATGCTGATCAAGAGATGTTTAGAAT
TCTTGGCCTGGTGCCTAAGGCGCCTAATTTTGGTCAAGGGCGTCAAGTGTCATGTGATGT
GGAGCAAGCAGAGCCTGCTGTTGCGGCAGCACAATGACTAGGATCTGAAGGCAACCTGCT
GCAGTTGACTACTAGGACTGCTCATACCTGTTGAAAAATGTTCTTATGCAAGCAACACGA
ATGTGTCATTTAATGGAGTCTGGGTTTTTCGATAGGCTACATGTGGATTTTCAAGAGGCA
TTTCTGCTCTTTACTCATGGCATGGGTTTGGTTTGTGTAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P54967
Definition sp|P54967|BIOB_ARATH Biotin synthase OS=Arabidopsis thaliana
Align length 52
Score (bit) 90.5
E-value 2.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955428|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_B04, 5'
         (398 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54967|BIOB_ARATH Biotin synthase OS=Arabidopsis thaliana GN=...    91   2e-18
sp|P36569|BIOB_SERMA Biotin synthase OS=Serratia marcescens GN=b...    58   1e-08
sp|Q47862|BIOB_ESCVU Biotin synthase OS=Escherichia vulneris GN=...    58   2e-08
sp|P12996|BIOB_ECOLI Biotin synthase OS=Escherichia coli (strain...    58   2e-08
sp|P12678|BIOB_SALTY Biotin synthase OS=Salmonella typhimurium G...    56   5e-08
sp|P94966|BIOB_METSK Biotin synthase OS=Methylobacillus sp. (str...    55   1e-07
sp|O59778|BIOB_SCHPO Biotin synthase OS=Schizosaccharomyces pomb...    53   4e-07
sp|Q89AK5|BIOB_BUCBP Biotin synthase OS=Buchnera aphidicola subs...    50   3e-06
sp|P32451|BIOB_YEAST Biotin synthase, mitochondrial OS=Saccharom...    50   3e-06
sp|P57378|BIOB_BUCAI Biotin synthase OS=Buchnera aphidicola subs...    50   5e-06
sp|P44987|BIOB_HAEIN Biotin synthase OS=Haemophilus influenzae G...    49   6e-06
sp|Q8K9P1|BIOB_BUCAP Biotin synthase OS=Buchnera aphidicola subs...    49   1e-05
sp|P84060|DTNB_RAT Dystrobrevin beta OS=Rattus norvegicus GN=Dtn...    33   0.34 
sp|O60941|DTNB_HUMAN Dystrobrevin beta OS=Homo sapiens GN=DTNB P...    33   0.34 
sp|O70585|DTNB_MOUSE Dystrobrevin beta OS=Mus musculus GN=Dtnb P...    32   0.75 
sp|Q68DK2|ZFY26_HUMAN Zinc finger FYVE domain-containing protein...    31   2.2  
sp|Q82E21|GSA_STRAW Glutamate-1-semialdehyde 2,1-aminomutase OS=...    30   3.7  
sp|B4KDI2|EI3D2_DROMO Eukaryotic translation initiation factor 3...    29   6.4  

>sp|P54967|BIOB_ARATH Biotin synthase OS=Arabidopsis thaliana
           GN=BIO2 PE=2 SV=1
          Length = 378

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 41/52 (78%), Positives = 47/52 (90%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFGQ 157
           FS+ EQALCF+AGANSIFTGEKLLTTPNNDFDADQ MF+ LGL+PK P+F +
Sbjct: 311 FSMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSE 362


>sp|P36569|BIOB_SERMA Biotin synthase OS=Serratia marcescens GN=bioB
           PE=3 SV=1
          Length = 346

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 31/52 (59%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
 Frame = +2

Query: 17  QALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPK--APNFGQGRQ 166
           QA+CFMAGANSIF G KLLTTPN + D D ++FR LGL P+  A   G  +Q
Sbjct: 274 QAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTATEHGDNQQ 325


>sp|Q47862|BIOB_ESCVU Biotin synthase OS=Escherichia vulneris
           GN=bioB PE=3 SV=1
          Length = 346

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 28/41 (68%), Positives = 33/41 (80%)
 Frame = +2

Query: 17  QALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPK 139
           QA+CFMAGANSIF G KLLTTPN + D D ++FR LGL P+
Sbjct: 273 QAMCFMAGANSIFYGCKLLTTPNPEEDKDVQLFRKLGLNPQ 313


>sp|P12996|BIOB_ECOLI Biotin synthase OS=Escherichia coli (strain
           K12) GN=bioB PE=1 SV=2
          Length = 346

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 28/41 (68%), Positives = 33/41 (80%)
 Frame = +2

Query: 17  QALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPK 139
           QA+CFMAGANSIF G KLLTTPN + D D ++FR LGL P+
Sbjct: 273 QAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQ 313


>sp|P12678|BIOB_SALTY Biotin synthase OS=Salmonella typhimurium
           GN=bioB PE=3 SV=2
          Length = 346

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 28/41 (68%), Positives = 32/41 (78%)
 Frame = +2

Query: 17  QALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPK 139
           QA+CFMAGANSIF G KLLTTPN   D D ++FR LGL P+
Sbjct: 273 QAMCFMAGANSIFYGCKLLTTPNPAEDKDLQLFRKLGLNPQ 313


>sp|P94966|BIOB_METSK Biotin synthase OS=Methylobacillus sp. (strain
           KT1) GN=bioB PE=3 SV=1
          Length = 341

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +2

Query: 17  QALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVP 136
           QALCF+AGANSIF GEKLLTT N + +AD+++F  LG+ P
Sbjct: 301 QALCFLAGANSIFYGEKLLTTGNPEAEADRKLFDKLGIHP 340


>sp|O59778|BIOB_SCHPO Biotin synthase OS=Schizosaccharomyces pombe
           GN=bio2 PE=1 SV=1
          Length = 363

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +2

Query: 5   SVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGL 130
           S  EQAL FMAGAN++FTGEK+LTTP   +D+D ++F   GL
Sbjct: 289 SESEQALAFMAGANAVFTGEKMLTTPAVSWDSDSQLFYNWGL 330


>sp|Q89AK5|BIOB_BUCBP Biotin synthase OS=Buchnera aphidicola subsp.
           Baizongia pistaciae GN=bioB PE=3 SV=1
          Length = 344

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = +2

Query: 17  QALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPN 148
           QA+CF++GANSIF G KLLTTPN   + D+++F  LGL  K  N
Sbjct: 271 QAMCFLSGANSIFYGCKLLTTPNPKKERDKQLFSKLGLNIKHKN 314


>sp|P32451|BIOB_YEAST Biotin synthase, mitochondrial
           OS=Saccharomyces cerevisiae GN=BIO2 PE=1 SV=2
          Length = 375

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +2

Query: 14  EQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVP 136
           EQ +CFMAG NSIFTG+K+LTT  N +D D+ M    GL P
Sbjct: 326 EQFVCFMAGCNSIFTGKKMLTTMCNGWDEDKAMLAKWGLQP 366


>sp|P57378|BIOB_BUCAI Biotin synthase OS=Buchnera aphidicola subsp.
           Acyrthosiphon pisum GN=bioB PE=3 SV=1
          Length = 343

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = +2

Query: 17  QALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPK 139
           QA+CFMAGANSIF G KLLT+ N +   D E+F+ L L+P+
Sbjct: 271 QAMCFMAGANSIFYGCKLLTSDNPEEKHDLELFKKLDLIPE 311
tr_hit_id A7QM45
Definition tr|A7QM45|A7QM45_VITVI Chromosome chr5 scaffold_124, whole genome shotgun sequence OS=Vitis vinifera
Align length 52
Score (bit) 98.2
E-value 2.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955428|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_B04, 5'
         (398 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QM45|A7QM45_VITVI Chromosome chr5 scaffold_124, whole genom...    98   2e-19
tr|A5AU05|A5AU05_VITVI Putative uncharacterized protein OS=Vitis...    98   2e-19
tr|B4FI64|B4FI64_MAIZE Putative uncharacterized protein OS=Zea m...    96   1e-18
tr|A9SBP6|A9SBP6_PHYPA Predicted protein OS=Physcomitrella paten...    96   1e-18
tr|Q69U93|Q69U93_ORYSJ Os08g0540100 protein OS=Oryza sativa subs...    95   2e-18
tr|B6TM42|B6TM42_MAIZE Biotin synthase OS=Zea mays PE=2 SV=1           95   2e-18
tr|B4FIZ7|B4FIZ7_MAIZE Putative uncharacterized protein OS=Zea m...    95   2e-18
tr|A9SHU6|A9SHU6_PHYPA Predicted protein OS=Physcomitrella paten...    95   2e-18
tr|A2YXL2|A2YXL2_ORYSI Putative uncharacterized protein OS=Oryza...    95   2e-18
tr|Q2XPR6|Q2XPR6_SOYBN Biotin synthase OS=Glycine max PE=2 SV=1        94   3e-18
tr|Q09JZ3|Q09JZ3_BRARP Biotin synthase OS=Brassica rapa subsp. p...    94   4e-18
tr|A9NXW3|A9NXW3_PICSI Putative uncharacterized protein OS=Picea...    93   7e-18
tr|Q5BQH5|Q5BQH5_RAPSA Biotin synthase (Fragment) OS=Raphanus sa...    91   2e-17
tr|Q84WG4|Q84WG4_ARATH Putative biotin synthase (Bio B) OS=Arabi...    91   4e-17
tr|Q24JJ0|Q24JJ0_ARATH At2g43360 OS=Arabidopsis thaliana PE=2 SV=1     91   4e-17
tr|A1ZYA4|A1ZYA4_9SPHI Biotin synthase OS=Microscilla marina ATC...    71   3e-11
tr|Q9Z6L5|Q9Z6L5_CHLPN Biotin Synthase (Biotin synthetase) OS=Ch...    69   9e-11
tr|A3XQ86|A3XQ86_9FLAO Biotin synthase OS=Leeuwenhoekiella bland...    67   3e-10
tr|Q11S94|Q11S94_CYTH3 Biotin synthase OS=Cytophaga hutchinsonii...    66   1e-09
tr|A8UIR3|A8UIR3_9FLAO Biotin synthase OS=Flavobacteriales bacte...    65   1e-09
tr|B6TCH7|B6TCH7_MAIZE Putative uncharacterized protein OS=Zea m...    65   1e-09
tr|Q26HH2|Q26HH2_9BACT Biotin synthase OS=Flavobacteria bacteriu...    65   2e-09
tr|A3U5W1|A3U5W1_9FLAO Biotin synthase OS=Croceibacter atlanticu...    64   3e-09
tr|A4CIS8|A4CIS8_9FLAO Biotin synthase OS=Robiginitalea biformat...    64   5e-09
tr|A2TRM3|A2TRM3_9FLAO Biotin synthase OS=Dokdonia donghaensis M...    64   5e-09
tr|Q1VQV8|Q1VQV8_9FLAO Biotin synthase OS=Psychroflexus torquis ...    63   6e-09
tr|Q5L5F9|Q5L5F9_CHLAB Putative biotin synthase OS=Chlamydophila...    63   8e-09
tr|A6GW77|A6GW77_FLAPJ Biotin synthase OS=Flavobacterium psychro...    63   8e-09
tr|A9DL93|A9DL93_9FLAO Biotin synthase OS=Kordia algicida OT-1 G...    63   8e-09
tr|A0M7A9|A0M7A9_GRAFK Biotin synthase OS=Gramella forsetii (str...    62   1e-08

>tr|A7QM45|A7QM45_VITVI Chromosome chr5 scaffold_124, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001917001
           PE=4 SV=1
          Length = 381

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 43/52 (82%), Positives = 51/52 (98%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFGQ 157
           FSVPEQALCF+AGANSIFTG+KLLTTPNNDFDADQ+MF++LGL+PKAP+F +
Sbjct: 311 FSVPEQALCFLAGANSIFTGDKLLTTPNNDFDADQQMFKLLGLIPKAPSFDE 362


>tr|A5AU05|A5AU05_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034772 PE=4 SV=1
          Length = 216

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 43/52 (82%), Positives = 51/52 (98%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFGQ 157
           FSVPEQALCF+AGANSIFTG+KLLTTPNNDFDADQ+MF++LGL+PKAP+F +
Sbjct: 146 FSVPEQALCFLAGANSIFTGDKLLTTPNNDFDADQQMFKLLGLIPKAPSFDE 197


>tr|B4FI64|B4FI64_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 263

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 43/52 (82%), Positives = 49/52 (94%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFGQ 157
           FS+PEQALCF+AGANSIF GEKLLTT NNDFDADQ MF+ILGL+PKAP+FG+
Sbjct: 192 FSMPEQALCFLAGANSIFAGEKLLTTANNDFDADQAMFKILGLIPKAPSFGE 243


>tr|A9SBP6|A9SBP6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163990 PE=4 SV=1
          Length = 422

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 45/56 (80%), Positives = 48/56 (85%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFGQGRQV 169
           FS PEQALCFMAGANSIFTGEKLLTTPNND DADQ+MF+ LGL+ K PNF QG  V
Sbjct: 357 FSQPEQALCFMAGANSIFTGEKLLTTPNNDKDADQQMFQTLGLISKPPNFNQGHDV 412


>tr|Q69U93|Q69U93_ORYSJ Os08g0540100 protein OS=Oryza sativa subsp.
           japonica GN=P0666G10.131 PE=2 SV=1
          Length = 381

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 43/51 (84%), Positives = 48/51 (94%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFG 154
           FS+PEQALCF+AGANSIF GEKLLTT NNDFDADQ MF+ILGL+PKAP+FG
Sbjct: 314 FSMPEQALCFLAGANSIFAGEKLLTTTNNDFDADQAMFKILGLIPKAPSFG 364


>tr|B6TM42|B6TM42_MAIZE Biotin synthase OS=Zea mays PE=2 SV=1
          Length = 386

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 43/52 (82%), Positives = 48/52 (92%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFGQ 157
           FS+PEQALCF+AGANSIF GEKLLTT NNDFDADQ MF ILGL+PKAP+FG+
Sbjct: 312 FSMPEQALCFLAGANSIFAGEKLLTTANNDFDADQAMFNILGLIPKAPSFGE 363


>tr|B4FIZ7|B4FIZ7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 269

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 43/52 (82%), Positives = 48/52 (92%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFGQ 157
           FS+PEQALCF+AGANSIF GEKLLTT NNDFDADQ MF ILGL+PKAP+FG+
Sbjct: 195 FSMPEQALCFLAGANSIFAGEKLLTTANNDFDADQAMFNILGLIPKAPSFGE 246


>tr|A9SHU6|A9SHU6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_109948 PE=4 SV=1
          Length = 429

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 45/57 (78%), Positives = 48/57 (84%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFGQGRQVS 172
           FS PEQALCFMAGANSIFTGEKLLTTPNND DADQ+MF+ LGL+PK PNF  G   S
Sbjct: 360 FSQPEQALCFMAGANSIFTGEKLLTTPNNDKDADQQMFQTLGLIPKPPNFQLGHSYS 416


>tr|A2YXL2|A2YXL2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30080 PE=4 SV=1
          Length = 377

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 43/51 (84%), Positives = 48/51 (94%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFG 154
           FS+PEQALCF+AGANSIF GEKLLTT NNDFDADQ MF+ILGL+PKAP+FG
Sbjct: 310 FSMPEQALCFLAGANSIFAGEKLLTTANNDFDADQAMFKILGLIPKAPSFG 360


>tr|Q2XPR6|Q2XPR6_SOYBN Biotin synthase OS=Glycine max PE=2 SV=1
          Length = 374

 Score = 94.0 bits (232), Expect = 3e-18
 Identities = 42/53 (79%), Positives = 49/53 (92%)
 Frame = +2

Query: 2   FSVPEQALCFMAGANSIFTGEKLLTTPNNDFDADQEMFRILGLVPKAPNFGQG 160
           FS+PEQALCF+AGANSIFTGEKLLTTPNNDFDADQ MF++LGL+P AP+  +G
Sbjct: 307 FSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLLPXAPSLNEG 359