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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955433
Clone id TST39A01NGRL0023_B09
Library
Length 620
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_B09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGAAAAAACAGATTGTAAACTGAATCAGAAGCAGAAGGCTGCCACCTTGCAGCAAAAAGT
GGTTCAGTCCAAGTTAAATGGATTTGTCTTGCCTGTAAAAAGGGCAGTAGAAGATACATC
TCTTTCTAGTGAAGAGCCTCTTCTCAAAAAATGGCTGTTATCGCGACATAGGGCTGGGGA
GAACAGAGACGAACCTGGTCACAGGAGTGGCAATTTACAGACAGATAATTGTGAGTCAGA
AACCACTGATGCTGCTACTGAGGACAGGAGTAGCTTTTTGTCCTTAAATCACGAACAAAG
TGGCAGCTTCATTGCTGTCAAGGAAATCGAAGATACAGAACTACTGGAGAAGAAAAGCAG
TTCAATTCAGTCTTCAGACAATGTGTCAGTACCAGAAGATTCCTGTGATTTTGTGACAGA
GGCACCCAAAGAATCCTCAGCCTCTCTTTTGAAGGAGTCTGAGCCAGTACTAGCTGATTA
TTCTGTAGATTTTGACTTCGAGAAAATCCGGGCGAGATTTGATAAGGGCTTTGTAAGAAA
CGATAGTTGTCTCAACAGGGGAAGGTGTCCGCGGGAAAAGAGACCTTTCCTGGCTGCATC
CATGGGATTAGATTATGGTG
■■Homology search results ■■ -
sp_hit_id Q6ZT98
Definition sp|Q6ZT98|TTLL7_HUMAN Tubulin polyglutamylase TTLL7 OS=Homo sapiens
Align length 47
Score (bit) 34.7
E-value 0.41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955433|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_B09, 5'
         (620 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZT98|TTLL7_HUMAN Tubulin polyglutamylase TTLL7 OS=Homo sapi...    35   0.41 
sp|P25280|YD3M_HERAU Uncharacterized 68.4 kDa protein in HgiDIIM...    32   2.0  
sp|Q6FRZ5|SPT5_CANGA Transcription elongation factor SPT5 OS=Can...    31   4.5  
sp|Q4QQW1|REEP4_RAT Receptor expression-enhancing protein 4 OS=R...    31   5.9  
sp|Q9HI27|GVPL1_HALSA Protein gvpL 1 OS=Halobacterium salinarium...    31   5.9  

>sp|Q6ZT98|TTLL7_HUMAN Tubulin polyglutamylase TTLL7 OS=Homo sapiens
           GN=TTLL7 PE=2 SV=2
          Length = 887

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -2

Query: 556 VETTIVSYKALIKSRPDFLEVKIYRIIS*YWLRLLQKRG*GFFGCLC 416
           V+T+I +    I   PD  EV +YRI +  + RLL  RG G + C C
Sbjct: 741 VKTSIRTVLPRIWKVPDVEEVNLYRIFNRVFNRLLWSRGQGLWNCFC 787


>sp|P25280|YD3M_HERAU Uncharacterized 68.4 kDa protein in HgiDIIM
           3'region OS=Herpetosiphon aurantiacus PE=4 SV=1
          Length = 611

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = +2

Query: 92  PVKRAVEDTSLSSEEPLLKKWLLSRHRAGENRDEPGHRSGNLQTDNCESETTDAATEDRS 271
           P K  V D+SLS +    +K   +         E      +  T+N  SET D   ED S
Sbjct: 359 PKKEEVNDSSLSKDSNSSEKENTNASSDSSTATENASSDSSTATENASSETNDGEVEDNS 418

Query: 272 SF 277
            F
Sbjct: 419 FF 420


>sp|Q6FRZ5|SPT5_CANGA Transcription elongation factor SPT5
           OS=Candida glabrata GN=SPT5 PE=3 SV=1
          Length = 1010

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = +2

Query: 98  KRAVEDTSLSSEEPLLKK--WLLSRHRAGENRDEPGHRSGNLQTDNCESE-----TTDAA 256
           KR  E+ S  + EP+ ++     S +  GEN  E      N + DN ESE      T+ A
Sbjct: 20  KRTHEEMSAENTEPVSEQAHGTGSENGDGENSLENSLEKDNAEKDNAESEKGSPSVTETA 79

Query: 257 TEDRSSFLSLNHEQSGSFIAVKEIEDTE 340
            +D SS    N E++     + E  D E
Sbjct: 80  ADDDSSKTDGNGEENQDAEGLAEDYDEE 107


>sp|Q4QQW1|REEP4_RAT Receptor expression-enhancing protein 4
           OS=Rattus norvegicus GN=Reep4 PE=2 SV=1
          Length = 257

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +2

Query: 35  KAATLQQKVVQSKLNGFVLPVKRAVEDTSLSSEEPLLKKWLLSRHRAGENRDEPGHRSGN 214
           +AAT  Q  +  +L  F +   R++ DTS     P  +  L    +A   R   G+R G 
Sbjct: 135 QAATKSQGALAGRLRSFSMQDLRSIPDTS----APTYQDPLYLEDQAPRRRPPIGYRPGG 190

Query: 215 LQTDNCESE 241
           LQ  + E E
Sbjct: 191 LQDSDTEDE 199


>sp|Q9HI27|GVPL1_HALSA Protein gvpL 1 OS=Halobacterium salinarium
           GN=gvpL11 PE=4 SV=1
          Length = 281

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
 Frame = +2

Query: 20  LNQKQKAATLQQKVVQSKLNGFVLPVKRAVEDTSLSSEEPLLKKWLLSRHRAGENRDEPG 199
           L Q ++     Q+VV +  + F  P+     DT L   +  +++WL   +     RDE  
Sbjct: 75  LEQVKRWLVTHQQVVDAASDAFGTPLPMRF-DTVLEGGDASIERWLEDHYEGF--RDELA 131

Query: 200 HRSG------NLQTDNCESETTDAATEDRSSFLSLNHEQSGS---FIAVKEIEDTELLEK 352
             +G      NL  D+   E T A  +DR   L    +QSG+   F+  K+  D  L E 
Sbjct: 132 SFAGVWEYRINLLWDSAPFEETIADRDDRLRELRQRQQQSGAGKKFLLEKQ-SDQRLQEL 190

Query: 353 K 355
           K
Sbjct: 191 K 191
tr_hit_id A9UNR5
Definition tr|A9UNR5|A9UNR5_MONBE Predicted protein OS=Monosiga brevicollis
Align length 84
Score (bit) 34.7
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955433|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_B09, 5'
         (620 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9UNR5|A9UNR5_MONBE Predicted protein OS=Monosiga brevicollis...    35   4.7  
tr|Q8TC09|Q8TC09_HUMAN TTLL7 protein (Fragment) OS=Homo sapiens ...    35   4.7  
tr|A7T4L1|A7T4L1_NEMVE Predicted protein OS=Nematostella vectens...    34   6.1  
tr|A7S7T7|A7S7T7_NEMVE Predicted protein OS=Nematostella vectens...    34   6.1  
tr|Q751H6|Q751H6_ASHGO AGL270Wp OS=Ashbya gossypii GN=AGL270W PE...    34   6.1  

>tr|A9UNR5|A9UNR5_MONBE Predicted protein OS=Monosiga brevicollis
           GN=30714 PE=4 SV=1
          Length = 838

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
 Frame = +2

Query: 119 SLSSEEPLLKKWLLSRHRAGENRD--EPGHRSG-------NLQTDNCESETTDAATEDRS 271
           S SS  P+ ++ +++RHRA  +RD   PG R+G       N+Q  +  S  ++ +T+D  
Sbjct: 400 SSSSTSPISRRAIMARHRAASSRDGSNPGSRTGSATDLLANIQPRSDVSSPSEGSTQD-- 457

Query: 272 SFLSLNHEQSGSFIAVKEIEDTEL 343
                +HE S    A  E++D E+
Sbjct: 458 -----SHE-SRQDDASSELDDMEM 475


>tr|Q8TC09|Q8TC09_HUMAN TTLL7 protein (Fragment) OS=Homo sapiens
           GN=TTLL7 PE=2 SV=2
          Length = 569

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -2

Query: 556 VETTIVSYKALIKSRPDFLEVKIYRIIS*YWLRLLQKRG*GFFGCLC 416
           V+T+I +    I   PD  EV +YRI +  + RLL  RG G + C C
Sbjct: 518 VKTSIRTVLPRIWKVPDVEEVNLYRIFNRVFNRLLWSRGQGLWNCFC 564


>tr|A7T4L1|A7T4L1_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g222257 PE=4 SV=1
          Length = 407

 Score = 34.3 bits (77), Expect = 6.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 77  NGFVLPVKRAVEDTSLSSEEPLLKKWLLSRHRAGENRDEPG 199
           N F+      V+D    ++ PL+K +L+  +R  EN D PG
Sbjct: 8   NAFIKTCDAVVQDADQGTKTPLIKHYLIGNNRIAENGDTPG 48


>tr|A7S7T7|A7S7T7_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g243436 PE=4 SV=1
          Length = 955

 Score = 34.3 bits (77), Expect = 6.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 77  NGFVLPVKRAVEDTSLSSEEPLLKKWLLSRHRAGENRDEPG 199
           N F+      V+D    ++ PL+K +L+  +R  EN D PG
Sbjct: 521 NAFIKTCDAVVQDADQGTKTPLIKHYLIGNNRIAENGDTPG 561


>tr|Q751H6|Q751H6_ASHGO AGL270Wp OS=Ashbya gossypii GN=AGL270W PE=4
           SV=1
          Length = 364

 Score = 34.3 bits (77), Expect = 6.1
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +2

Query: 152 WLLSRHRAGENRD----EPGHRSGNLQTDNCESETTDAATEDRSSFLSLNHEQSGSFIAV 319
           WL SR  + E+         HR+    T N E +++  +    SSF   NH +S  +I +
Sbjct: 128 WLHSRKSSDESPRMSVLSTQHRNSLFSTGNTEEQSSTGSVSSSSSFRRTNHRRSREYIPL 187

Query: 320 KEIEDTELLE 349
           +++E   +++
Sbjct: 188 QQLERLSIVD 197