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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955440
Clone id TST39A01NGRL0023_B16
Library
Length 699
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_B16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GCAGAATGGGGAAGTTGGAGGCCTCCTTGCTCTTCGTCTTCCTGGTTGCCTGCACAGCAA
TCCCTTCCGTCGTCAACGCCCAACTCAATTGCGACAAAGCCCACGTGGGCCTCGCCAAGC
AGGACTGCATGAACGCCATCAATATGGTTACCGAGGATGTTTTCACACTCCAGCCCGGCC
ACTTCATGCAAGAGGTCTTTGGGTCATGTAAGGCCAAAGTGTCCAACAACGGTTGGGAGG
CGAAGAAGTTCTACCGTGACAGCGTCACCCTCGAGTTTAATGACATCCTTCTCGAATGTG
TCTACTACAATTCCCACCCAGGTGCAGTGTTGAGTGGCAACAATATCTTCTACTCACTTA
TGCCTATTTCTCGCCCCTGAGATGATCAAGGGTAGCATGGTAACAATGCTTCTATATTAT
GGACATTAATGCAAATGAGGTTAATATAATGCTTCTATATTGTGGACATGAAGGCAAACA
GGATTAGCCACAATGCTTGTCTATTATGGACATGAATGCAATTGGCATCAACAACATTGC
TTGTCTATCATGGACATGAATGTAATTGGGAGTATCTTGACTTGCCCCTCTCCAAAAGTC
CTTTCTCTGTATCTTTTTTCTTCTAATCCGTTGCCATAGGAGTTTTTGAATGATAAAGAT
TTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P0C208
Definition sp|P0C208|REX_HTL1L Protein Rex OS=Human T-cell leukemia virus 1 (isolate Melanesia mel5 subtype C)
Align length 65
Score (bit) 33.1
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955440|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_B16, 5'
         (650 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C208|REX_HTL1L Protein Rex OS=Human T-cell leukemia virus 1...    33   1.3  
sp|Q8K385|FRRS1_MOUSE Ferric-chelate reductase 1 OS=Mus musculus...    33   1.7  
sp|P53971|FAP1_YEAST FKBP12-associated protein 1 OS=Saccharomyce...    32   2.2  
sp|Q8D2I8|CLS_WIGBR Cardiolipin synthetase OS=Wigglesworthia glo...    32   2.2  
sp|P49750|YLPM1_HUMAN YLP motif-containing protein 1 OS=Homo sap...    32   2.9  
sp|Q99PJ1|PCD15_MOUSE Protocadherin-15 OS=Mus musculus GN=Pcdh15...    32   3.8  
sp|P26632|EGR1_DANRE Early growth response protein 1 OS=Danio re...    32   3.8  
sp|Q9XLX0|COX3_SACKL Cytochrome c oxidase subunit 3 OS=Saccharom...    31   4.9  
sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487 OS=Dictyoste...    31   6.4  
sp|P98088|MUC5A_HUMAN Mucin-5AC (Fragments) OS=Homo sapiens GN=M...    30   8.4  

>sp|P0C208|REX_HTL1L Protein Rex OS=Human T-cell leukemia virus 1
           (isolate Melanesia mel5 subtype C) PE=2 SV=1
          Length = 189

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 25/65 (38%), Positives = 30/65 (46%)
 Frame = +1

Query: 1   AEWGSWRPPCSSSSWLPAQQSLPSSTPNSIATKPTWASPSRTA*TPSIWLPRMFSHSSPA 180
           +E G+W PP  SSS     Q+ PS TP   A+ P   +PS  A   S      F   SP 
Sbjct: 134 SEMGAWSPPLGSSS-----QACPSPTP---ASGPKTCTPSGEA-PSSACTSISFPPPSPG 184

Query: 181 TSCKR 195
            SC R
Sbjct: 185 PSCPR 189


>sp|Q8K385|FRRS1_MOUSE Ferric-chelate reductase 1 OS=Mus musculus
           GN=FRRS1 PE=2 SV=1
          Length = 592

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 235 QPLLDTLA--LHDPKTSCMKWPGWSVKTSSVTILMAFM 128
           QPLL T    LHDP+     W  WSV T++  I +A M
Sbjct: 460 QPLLATFRPPLHDPRRQVFNWTHWSVGTAARIIAVAAM 497


>sp|P53971|FAP1_YEAST FKBP12-associated protein 1 OS=Saccharomyces
           cerevisiae GN=FAP1 PE=1 SV=1
          Length = 965

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
 Frame = -3

Query: 345 YC---CHSTLHLGGNCSRHIREGCH*TR-------G*RCHGRTSSPPNRCWTL 217
           YC   C  T HL GNC +  ++ C   R          CHG+T  P   C TL
Sbjct: 585 YCYHTCQKTCHLPGNCQKVCKQTCGQKRLNCNHECPKPCHGKTECPDLPCATL 637


>sp|Q8D2I8|CLS_WIGBR Cardiolipin synthetase OS=Wigglesworthia
           glossinidia brevipalpis GN=cls PE=3 SV=1
          Length = 495

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
 Frame = +3

Query: 21  ASLLFVFLVACT-AIPSVVNAQLNCDKAHVGLAKQDCMNAINMVTE-----DVFTLQPGH 182
           A LL +++V    AI  ++  +LN +K  +  +K   ++A+  + +     ++FT +  H
Sbjct: 47  AWLLIIYVVPFIGAIIYLLLGELNLEKKRIKRSKIIWISALKKIKKLKNYKEIFTTKNSH 106

Query: 183 FMQEVFGSCKAKVSNNGWEAKKF--------YRDSVTLEFN--DILLECVYYNSHPG 323
             + +F  CK +    G +++K            SV  + N   I +E ++Y  HPG
Sbjct: 107 IARSLFRLCKHRQGIGGVKSEKINILNDPDNVMQSVINDINLAKISIEMIFYIWHPG 163


>sp|P49750|YLPM1_HUMAN YLP motif-containing protein 1 OS=Homo
           sapiens GN=YLPM1 PE=1 SV=3
          Length = 1951

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 13  SWRPPCSSSSWLPAQQSLPSSTPNS---IATKPTWASPSRTA*TPSIWLPRMFSHSSPAT 183
           S+ PP SS  +LP  Q  PS +P S   +A  P+++S S ++    +   + +  SS A+
Sbjct: 173 SYYPPTSSQPYLPPAQPSPSQSPPSQSYLAPTPSYSSSSSSS-QSYLSHSQSYLPSSQAS 231

Query: 184 SCKRSLGH 207
             + S GH
Sbjct: 232 PSRPSQGH 239


>sp|Q99PJ1|PCD15_MOUSE Protocadherin-15 OS=Mus musculus GN=Pcdh15 PE=1
            SV=1
          Length = 1943

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +1

Query: 49   PAQQSLPSSTPNSIATKPTWASPSRTA*TPSIWLPRMFSHSSPATSCKRSLGHVR 213
            P   SLP   P S+   P   +P      PS  +P   S S+PA  C  S  H R
Sbjct: 1790 PPTSSLPLPPPLSLPPPPRPPAPRLFPQPPSTSIPSTDSISAPAAKCTASATHAR 1844


>sp|P26632|EGR1_DANRE Early growth response protein 1 OS=Danio rerio
           GN=egr1 PE=2 SV=2
          Length = 511

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 6/118 (5%)
 Frame = +1

Query: 28  CSSSSWLPAQQSLPSST------PNSIATKPTWASPSRTA*TPSIWLPRMFSHSSPATSC 189
           CS+S W     SL S        P SI +  + A+   ++ T SI      S SS + SC
Sbjct: 109 CSNSLWAEPLFSLVSGLVGINPPPASIPSSTSQATHPSSSSTSSIPSSSSSSTSSASLSC 168

Query: 190 KRSLGHVRPKCPXXXXXXXXXXXXASPSSLMTSFSNVSTTIPTQVQC*VATISSTHLC 363
                 V    P            ASP     S  N STT+ T +Q   +T  S   C
Sbjct: 169 S-----VHQSEPNPIYSAAPTYSSASPDIFPESGPNFSTTVGTSLQYSSSTYPSAKTC 221


>sp|Q9XLX0|COX3_SACKL Cytochrome c oxidase subunit 3
           OS=Saccharomyces kluyveri GN=COX3 PE=3 SV=1
          Length = 269

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 234 WEAKKFYRDSVTLEFNDILLECVYYNSHPGAVLSGNNIFYSLMPIS 371
           W A      S TL F DI+ E  Y   H  AV  G N+ + L  +S
Sbjct: 52  WLALFVLTSSATLWFRDIIAEATYLGDHTIAVRKGINLGFLLFVVS 97


>sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487
           OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1
          Length = 555

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 59  NPFRRQRPTQLRQSPRGPRQAGLHERHQYGYRGCF 163
           NP+ +Q P Q + +P G +Q    ++ QYGY+  F
Sbjct: 25  NPYGQQPPQQQQYNPYGEQQQQPQQQQQYGYQPQF 59


>sp|P98088|MUC5A_HUMAN Mucin-5AC (Fragments) OS=Homo sapiens GN=MUC5AC
            PE=1 SV=3
          Length = 5030

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 28/97 (28%), Positives = 41/97 (42%)
 Frame = +1

Query: 25   PCSSSSWLPAQQSLPSSTPNSIATKPTWASPSRTA*TPSIWLPRMFSHSSPATSCKRSLG 204
            PCS+SS  PAQ + P+++  +       ++PS T  T S+   R       ATS K++  
Sbjct: 1480 PCSTSS-SPAQTTPPTTSKTTETRASGSSAPSSTPGTVSLSTARTTPAPGTATSVKKTFS 1538

Query: 205  HVRPKCPXXXXXXXXXXXXASPSSLMTSFSNVSTTIP 315
               P                 P    TS S++STT P
Sbjct: 1539 TPSP-----------------PPVPATSTSSMSTTAP 1558
tr_hit_id A8QEC8
Definition tr|A8QEC8|A8QEC8_BOVIN KRI1 protein (Fragment) OS=Bos taurus
Align length 66
Score (bit) 38.5
E-value 0.36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955440|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_B16, 5'
         (650 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8QEC8|A8QEC8_BOVIN KRI1 protein (Fragment) OS=Bos taurus GN=...    39   0.36 
tr|Q4TBQ6|Q4TBQ6_TETNG Chromosome undetermined SCAF7099, whole g...    37   1.0  
tr|B4I8S6|B4I8S6_DROSE GM16043 OS=Drosophila sechellia GN=GM1604...    36   2.3  
tr|Q8C8R7|Q8C8R7_MOUSE Putative uncharacterized protein (Fragmen...    34   6.7  
tr|A3L054|A3L054_PSEAE Putative uncharacterized protein OS=Pseud...    34   8.8  
tr|Q4N442|Q4N442_THEPA Putative uncharacterized protein OS=Theil...    34   8.8  
tr|B6MH64|B6MH64_BRAFL Putative uncharacterized protein OS=Branc...    34   8.8  
tr|B6M6Q5|B6M6Q5_BRAFL Putative uncharacterized protein OS=Branc...    34   8.8  
tr|B0CTB8|B0CTB8_LACBS Related actin-binding protein OS=Laccaria...    34   8.8  

>tr|A8QEC8|A8QEC8_BOVIN KRI1 protein (Fragment) OS=Bos taurus
           GN=KRI1 PE=2 SV=1
          Length = 448

 Score = 38.5 bits (88), Expect = 0.36
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 7   WGSWRPPCSSSSWLPAQQSLPSSTPNSIATKP-TWASPSRTA*TPSIWLPRMFSHSSPAT 183
           W +W  P    +W  +QQ   S TP SI T   T ASP R++  P  W  R  S  SP  
Sbjct: 342 WDTWAGPEQGGAW--SQQEPHSRTPTSIWTPTMTPASPGRSSERPLRWARRSGSRPSPRL 399

Query: 184 SCKRSL 201
             +RSL
Sbjct: 400 WDRRSL 405


>tr|Q4TBQ6|Q4TBQ6_TETNG Chromosome undetermined SCAF7099, whole genome
            shotgun sequence OS=Tetraodon nigroviridis
            GN=GSTENG00003656001 PE=4 SV=1
          Length = 1217

 Score = 37.0 bits (84), Expect = 1.0
 Identities = 29/71 (40%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 10   GSWRPPCSSSSWLPAQQSLPSSTPNSIATKPTWAS--PSRTA*TPSIWLPRMFSHSSPAT 183
            G W PP SS+     Q + P S P+S    P+WAS   +R    P  WLP   S  SP T
Sbjct: 925  GRWPPPSSST----PQVTCPPSPPSS-GAPPSWASRTATRAPPCPPRWLP---STPSPHT 976

Query: 184  SCKRSLGHVRP 216
            SC      VRP
Sbjct: 977  SC----SEVRP 983


>tr|B4I8S6|B4I8S6_DROSE GM16043 OS=Drosophila sechellia GN=GM16043
           PE=4 SV=1
          Length = 155

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 25/62 (40%), Positives = 35/62 (56%)
 Frame = +1

Query: 1   AEWGSWRPPCSSSSWLPAQQSLPSSTPNSIATKPTWASPSRTA*TPSIWLPRMFSHSSPA 180
           A+  S   P SSSSW+P+  S  SSTP+S ++  T +S S T  + S   P   S +SP 
Sbjct: 16  ADSSSSTTPTSSSSWIPSSSS-SSSTPSSSSSSSTPSSSSSTP-SSSSSTPSSSSSTSPT 73

Query: 181 TS 186
           +S
Sbjct: 74  SS 75


>tr|Q8C8R7|Q8C8R7_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=ENSMUSG00000062298 PE=2 SV=1
          Length = 180

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 23/68 (33%), Positives = 29/68 (42%)
 Frame = +1

Query: 10  GSWRPPCSSSSWLPAQQSLPSSTPNSIATKPTWASPSRTA*TPSIWLPRMFSHSSPATSC 189
           G  R PC     LPA   L S+  +     PTW +P+    TP   LP +   SS    C
Sbjct: 44  GLTRAPC-----LPAPLRLKSAFTSGALESPTWPTPAFLRRTPPPALPLLCDSSSSGYPC 98

Query: 190 KRSLGHVR 213
             S G +R
Sbjct: 99  GLSSGSLR 106


>tr|A3L054|A3L054_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa C3719 GN=PACG_03468 PE=3 SV=1
          Length = 497

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 20/76 (26%)
 Frame = +1

Query: 31  SSSSWLPAQQSLPSSTPNSIATKP----------TW-ASPSRT---------A*TPSIWL 150
           +S++W  A +  P +TP S A+            TW AS SR+         A  PS W 
Sbjct: 401 ASANWPAASRCPPRATPTSSASSAPSVSTACRWTTWKASSSRSRDSASNRSGAPWPSTWT 460

Query: 151 PRMFSHSSPATSCKRS 198
           P   S S+PA +C+R+
Sbjct: 461 PTPSSSSAPARACRRN 476


>tr|Q4N442|Q4N442_THEPA Putative uncharacterized protein OS=Theileria
            parva GN=TP02_0797 PE=4 SV=1
          Length = 3649

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 395  LPLIISGARNRHK*VEDIVATQH-CTWVGIVVDTFEKDVIKLEGDAVTVELLRLPTVVGH 219
            +P+I+    NRH   E  +A +  CT     + TF+K  IKL   ++ VE+  +  +V +
Sbjct: 3275 IPVILKAITNRHSVQESFLAFRMTCTLFSRTIQTFDKIFIKLSPLSLNVEMRVIEQIVDY 3334

Query: 218  F 216
            F
Sbjct: 3335 F 3335


>tr|B6MH64|B6MH64_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_123130 PE=4 SV=1
          Length = 2394

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = -2

Query: 247 FFASQPLLDTLALHDPKTSCMKWPGWSVKTSSVTILMAFMQSCLARPTWALSQLSWALTT 68
           F   + ++D +     K  C K+  W++K   +  +  + +S ++ P W     SW +T 
Sbjct: 98  FSGQKSIVDVVEKVPAKHPCAKFQRWALKQEDLANMGQWKKSKISNPEWNKLAYSWPVTE 157

Query: 67  EGI 59
           +G+
Sbjct: 158 DGV 160


>tr|B6M6Q5|B6M6Q5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_122198 PE=4 SV=1
          Length = 2935

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = -2

Query: 247 FFASQPLLDTLALHDPKTSCMKWPGWSVKTSSVTILMAFMQSCLARPTWALSQLSWALTT 68
           F   + ++D +     K  C K+  W++K   +  +  + +S ++ P W     SW +T 
Sbjct: 774 FSGQKSIVDVVEKVPAKHPCAKFQRWALKQEDLANMGQWKKSKISNPEWNKLAYSWPVTE 833

Query: 67  EGI 59
           +G+
Sbjct: 834 DGV 836


>tr|B0CTB8|B0CTB8_LACBS Related actin-binding protein OS=Laccaria
           bicolor (strain S238N-H82) GN=LACBIDRAFT_380245 PE=4
           SV=1
          Length = 728

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 19/56 (33%), Positives = 34/56 (60%)
 Frame = +1

Query: 19  RPPCSSSSWLPAQQSLPSSTPNSIATKPTWASPSRTA*TPSIWLPRMFSHSSPATS 186
           RPP   ++  PA  ++  ++P SI+T P   SP+ TA  PS   PR+ +H++ +++
Sbjct: 236 RPPVLPTTSRPAFSAMQPASPASISTPPARVSPAFTASQPSP-PPRIITHAAVSST 290