DK955455 |
Clone id |
TST39A01NGRL0023_C07 |
Library |
TST39 |
Length |
441 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_C07. 5' end sequence. |
Accession |
DK955455 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL307Contig1 |
Sequence |
ATTCCTGTTACATCCCTCTCTTGCACCATGGCCAAGGATCCCGTCCGCGTTCTTGTCACA GGAGCTGCAGGGCAAATTGGATATGCCCTAGTTCCAATGATAGCGAGGGGAGTGATGTTG GGACCGGACCAGCCCATTATCTTGCACATGCTGGATATTCCTCCAGCTGCTGAGGCTTTG AATGGTGTCAAGATGGAGCTTGTCGATGCAGCATTCCCTCTCCTTAAGGGTGTTGTTGCC ACCACTGATGTCGTGGAGGCTTGCAAGGGTGTGAACATTGCAATCATGGTTGGGGGCTTT CCTCGTAAAGAGGGCATGGAGAGGAAGGATGTCATGTCGAAGAATGTGTCCATATACAAG TCGCAAGCATCAGCATTGGAAGAACATGCAGCAAAAGACTTGAAGGTTTTAGTAGTTGCC AATCCTGCAAACACCAACGCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O48905 |
Definition |
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa |
Align length |
138 |
Score (bit) |
253.0 |
E-value |
2.0e-67 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955455|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_C07, 5' (441 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medica... 253 2e-67 sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea ma... 251 1e-66 sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Ara... 248 1e-65 sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza ... 246 2e-65 sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Ara... 246 2e-65 sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesemb... 245 7e-65 sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta v... 244 2e-64 sp|Q54GE6|MDHA_DICDI Probable malate dehydrogenase 1 OS=Dictyost... 167 2e-41 sp|Q7NZ60|MDH_CHRVO Malate dehydrogenase OS=Chromobacterium viol... 165 9e-41 sp|Q1LKG0|MDH_RALME Malate dehydrogenase OS=Ralstonia metallidur... 158 8e-39 sp|A5G320|MDH_ACICJ Malate dehydrogenase OS=Acidiphilium cryptum... 158 1e-38 sp|Q0K8F5|MDH_RALEH Malate dehydrogenase OS=Ralstonia eutropha (... 157 1e-38 sp|Q46YU4|MDH_RALEJ Malate dehydrogenase OS=Ralstonia eutropha (... 156 3e-38 sp|Q21K60|MDH_SACD2 Malate dehydrogenase OS=Saccharophagus degra... 154 1e-37 sp|Q1Q932|MDH_PSYCK Malate dehydrogenase OS=Psychrobacter cryoha... 154 1e-37 sp|A5WGM2|MDH_PSYWF Malate dehydrogenase OS=Psychrobacter sp. (s... 154 2e-37 sp|Q4FQU7|MDH_PSYA2 Malate dehydrogenase OS=Psychrobacter arctic... 154 2e-37 sp|Q0ABE6|MDH_ALHEH Malate dehydrogenase OS=Alkalilimnicola ehrl... 153 3e-37 sp|A1K5Q9|MDH_AZOSB Malate dehydrogenase OS=Azoarcus sp. (strain... 153 4e-37 sp|P10584|MDH_THETH Malate dehydrogenase OS=Thermus thermophilus... 152 5e-37 sp|Q5SKV7|MDH_THET8 Malate dehydrogenase OS=Thermus thermophilus... 152 5e-37 sp|P61977|MDH_THET2 Malate dehydrogenase OS=Thermus thermophilus... 152 5e-37 sp|Q04820|MDHC_ECHGR Malate dehydrogenase, cytoplasmic OS=Echino... 152 5e-37 sp|Q2YAQ4|MDH_NITMU Malate dehydrogenase OS=Nitrosospira multifo... 152 6e-37 sp|Q0VQ52|MDH_ALCBS Malate dehydrogenase OS=Alcanivorax borkumen... 152 6e-37 sp|A4JM71|MDH2_BURVG Malate dehydrogenase 2 OS=Burkholderia viet... 152 6e-37 sp|Q393V1|MDH_BURS3 Malate dehydrogenase OS=Burkholderia sp. (st... 152 8e-37 sp|P80536|MDH_BURPS Malate dehydrogenase OS=Burkholderia pseudom... 152 8e-37 sp|A3NM97|MDH_BURP6 Malate dehydrogenase OS=Burkholderia pseudom... 152 8e-37 sp|Q3JKE9|MDH_BURP1 Malate dehydrogenase OS=Burkholderia pseudom... 152 8e-37
>sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1 Length = 332
Score = 253 bits (647), Expect = 2e-67 Identities = 129/138 (93%), Positives = 134/138 (97%) Frame = +1
Query: 28 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 207 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQP+ILHMLDI PAAE+LNGVKMELVD Sbjct: 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVD 60
Query: 208 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 387 AAFPLLKGVVATTDVVEAC GVNIA+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE+H Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 388 AAKDLKVLVVANPANTNA 441 AA + KVLVVANPANTNA Sbjct: 121 AAANCKVLVVANPANTNA 138
>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2 Length = 332
Score = 251 bits (640), Expect = 1e-66 Identities = 127/138 (92%), Positives = 133/138 (96%) Frame = +1
Query: 28 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 207 MAK+P+RVLVTGAAGQIGYALVPMIARGVMLG DQP+ILHMLDIPPAAEALNGVKMELVD Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 208 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 387 AAFPLLKGVVATTDVVEAC GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE H Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 388 AAKDLKVLVVANPANTNA 441 AA + KVLVVANPANTNA Sbjct: 121 AAPNCKVLVVANPANTNA 138
>sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2 Length = 332
Score = 248 bits (632), Expect = 1e-65 Identities = 123/138 (89%), Positives = 132/138 (95%) Frame = +1
Query: 28 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 207 MAK+PVRVLVTGAAGQIGYALVPMIARG+MLG DQP+ILHMLDIPPAAEALNGVKMEL+D Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60
Query: 208 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 387 AAFPLLKGVVATTD VE C GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQA+ALE+H Sbjct: 61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120
Query: 388 AAKDLKVLVVANPANTNA 441 AA + KVLVVANPANTNA Sbjct: 121 AAPNCKVLVVANPANTNA 138
>sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3 Length = 332
Score = 246 bits (629), Expect = 2e-65 Identities = 123/138 (89%), Positives = 132/138 (95%) Frame = +1
Query: 28 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 207 MAK+P+RVLVTGAAGQIGYALVPMIARGVMLG DQP+ILHMLDIPPA E+LNG+KMELVD Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVD 60
Query: 208 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 387 AAFPLLKG+VATTDVVEAC GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE H Sbjct: 61 AAFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 388 AAKDLKVLVVANPANTNA 441 AA + KVLVVANPANTNA Sbjct: 121 AAPNCKVLVVANPANTNA 138
>sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1 Length = 332
Score = 246 bits (629), Expect = 2e-65 Identities = 125/138 (90%), Positives = 132/138 (95%) Frame = +1
Query: 28 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 207 MAK+PVRVLVTGAAGQIGYALVPMIARG+MLG DQP+ILHMLDIP AAEALNGVKMELVD Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60
Query: 208 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 387 AAFPLLKGVVATTD VEAC GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE+H Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 388 AAKDLKVLVVANPANTNA 441 AA + KVLVVANPANTNA Sbjct: 121 AAPNCKVLVVANPANTNA 138
>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1 Length = 332
Score = 245 bits (625), Expect = 7e-65 Identities = 122/138 (88%), Positives = 132/138 (95%) Frame = +1
Query: 28 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 207 MA +P+RVLVTGAAGQIGYALVPMIARG+MLG +QP+ILHMLDIPPAAEALNGVKMELVD Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 208 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 387 AAFPLLKGVVATTD EACKGVN+A+MVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H Sbjct: 61 AAFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
Query: 388 AAKDLKVLVVANPANTNA 441 AA + KVLVVANPANTNA Sbjct: 121 AAPNCKVLVVANPANTNA 138
>sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1 Length = 332
Score = 244 bits (622), Expect = 2e-64 Identities = 123/138 (89%), Positives = 132/138 (95%) Frame = +1
Query: 28 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 207 MA +P+RVLVTGAAGQIGYALVPMIARGVMLG +QP+ILHMLDIPPAAEALNGVKMELVD Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGVMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 208 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 387 AAFPLLKGVVATTDV EACKGVN+A+MVGGFPRKEGMERKDVM KNVSIYKSQASALE++ Sbjct: 61 AAFPLLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQY 120
Query: 388 AAKDLKVLVVANPANTNA 441 AA + KVLVVANPANTNA Sbjct: 121 AAPNCKVLVVANPANTNA 138
>sp|Q54GE6|MDHA_DICDI Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1 Length = 391
Score = 167 bits (423), Expect = 2e-41 Identities = 82/134 (61%), Positives = 105/134 (78%) Frame = +1
Query: 40 PVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVDAAFP 219 P++VLVTGAAGQI Y+L+ MIA G M GP QP+ILH+LDIP A+AL GV MEL D ++P Sbjct: 61 PIKVLVTGAAGQIAYSLMFMIASGQMFGPHQPVILHLLDIPKMADALKGVVMELQDCSYP 120
Query: 220 LLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEHAAKD 399 LL+ VVATTD+ A +N+AI+VG FPR GM+RKD++ NVSI+K Q AL ++A++ Sbjct: 121 LLQSVVATTDIQTAFLHINVAILVGAFPRGPGMQRKDLLKVNVSIFKEQGEALNKYASRG 180
Query: 400 LKVLVVANPANTNA 441 +KVLVV NPANTNA Sbjct: 181 VKVLVVGNPANTNA 194
>sp|Q7NZ60|MDH_CHRVO Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1 Length = 326
Score = 165 bits (417), Expect = 9e-41 Identities = 85/136 (62%), Positives = 102/136 (75%) Frame = +1
Query: 34 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVDAA 213 K PVRV VTGAAGQIGY+L+ IA G MLG DQP+ILH+LD+P A AL GV MEL D A Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILHLLDLPQAQTALKGVMMELEDCA 61
Query: 214 FPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEHAA 393 FPLL G+VAT D A K V +A++VG PR +GMERKD++ N +I+ Q AL +HAA Sbjct: 62 FPLLAGMVATDDPNVAFKDVKVALLVGARPRSKGMERKDLLEANGAIFTVQGKALNDHAA 121
Query: 394 KDLKVLVVANPANTNA 441 +D+KVLVV NPANTNA Sbjct: 122 RDVKVLVVGNPANTNA 137
>sp|Q1LKG0|MDH_RALME Malate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=mdh PE=3 SV=1 Length = 327
Score = 158 bits (400), Expect = 8e-39 Identities = 82/138 (59%), Positives = 101/138 (73%) Frame = +1
Query: 28 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 207 MAK P+RV VTGAAGQIGY+L+ IA G MLG DQP+IL +LD+P A A+ GV MEL D Sbjct: 1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELED 60
Query: 208 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 387 AFPLL GVV T D A K ++A++VG PR +GMERKD++ N I+ Q AL+E Sbjct: 61 CAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEV 120
Query: 388 AAKDLKVLVVANPANTNA 441 A++D+KVLVV NPANTNA Sbjct: 121 ASRDVKVLVVGNPANTNA 138
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9FT00 |
Definition |
tr|Q9FT00|Q9FT00_CICAR Malate dehydrogenase OS=Cicer arietinum |
Align length |
138 |
Score (bit) |
257.0 |
E-value |
2.0e-67 |
Report |
|