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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955456
Clone id TST39A01NGRL0023_C08
Library
Length 598
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_C08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCTTCCTCTTCCACCCGTTGGACTGGGCATTCTTTCCTGCAGCCTTCTTTTTCGCCATA
GCTTTTAGAATAGCATTCAGATCTCTAGACTTCTGTTGTTGTGGGCTTCGCGTTGATTGC
ATTGAGCTCCTTGATTTTTCGCTGGAGCTCTCCCTCGTAGTCGGGGTTGCAATCGGGGTT
TCGTTCTGTTGCCTTGCCATTCCAGATCGACCTGCCAGGGTGCAGTTCTCTGACTCTCGA
GCTGCTGCTTGCGCCTGGAGATTCTCATCACTCTGTTCTTTTCTACAGCAAAAAATCCAT
TAACCTTGTCTGGAGATTTGCCTTATGTGGAGAATCACCCATACGTGACTGCTCCATAGC
TCTGAAGTGAGAAGGTGCATGCGCATTGTGGTGTCATAGGTACTTCTCGCATCGAGGGCT
GCTATGGGTACTGCTGTACTTCTGCCGCATGACTGCTTGCGGAACACCAAAAGCAAGCAT
AAGGGCCATCTCTCTGAGGCAATTCTTCACTCTGATAGAGCTTACCGAGCAAGAAGAGAC
ACCCTTCAAGCATCTGTCTTAAGTGATCCACCGTCCACAGTATGCGGGGATCACGGAA
■■Homology search results ■■ -
sp_hit_id Q9I7U4
Definition sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster
Align length 44
Score (bit) 31.2
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955456|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_C08, 5'
         (598 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE...    31   4.2  
sp|Q8R368|DYXC1_MOUSE Dyslexia susceptibility 1 candidate gene 1...    30   7.1  
sp|Q95K63|STOX2_MACFA Storkhead-box protein 2 OS=Macaca fascicul...    30   9.3  
sp|Q9P2F5|STOX2_HUMAN Storkhead-box protein 2 OS=Homo sapiens GN...    30   9.3  

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1
            SV=3
          Length = 18141

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 295  FFAVEKNRVMRISRRKQQLESQRTAPWQVDLEWQGNRTKPRLQP 164
            F   E   +M +S R ++LE+QR    Q  + W+  + +P+LQP
Sbjct: 5137 FITTEDVNIMHVSER-EKLEAQRLIREQQAVNWRQQQQRPQLQP 5179


>sp|Q8R368|DYXC1_MOUSE Dyslexia susceptibility 1 candidate gene 1
           protein homolog OS=Mus musculus GN=Dyx1c1 PE=2 SV=1
          Length = 420

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 156 EGELQRKIKELNAINAKPTTTEV*R-SECYSKSYGEKEGCRKECPVQRVEEE 4
           E E ++KI+++     K  T+E+    EC  K+ G+K   RKE P +R + E
Sbjct: 137 EEEERKKIEDMKENERKKATSELEAWKECQKKADGQKRVQRKEKPPERKQAE 188


>sp|Q95K63|STOX2_MACFA Storkhead-box protein 2 OS=Macaca
           fascicularis GN=STOX2 PE=2 SV=1
          Length = 926

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -2

Query: 516 IRVKNCLREMALMLAFGVPQAVMRQKYSSTHSSPRCEKYL*HHNAHAPSHFRAMEQSRMG 337
           + V+N +R  ALM      +A   +  SS H S R +K   H  +H  S   +  +   G
Sbjct: 322 LTVENVMRHTALMKKLEEEKAQRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKG 381

Query: 336 DSPHKANL 313
           D    ++L
Sbjct: 382 DPSDGSHL 389


>sp|Q9P2F5|STOX2_HUMAN Storkhead-box protein 2 OS=Homo sapiens
           GN=STOX2 PE=2 SV=2
          Length = 926

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -2

Query: 516 IRVKNCLREMALMLAFGVPQAVMRQKYSSTHSSPRCEKYL*HHNAHAPSHFRAMEQSRMG 337
           + V+N +R  ALM      +A   +  SS H S R +K   H  +H  S   +  +   G
Sbjct: 322 LTVENVMRHTALMKKLEEEKAQRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKG 381

Query: 336 DSPHKANL 313
           D    ++L
Sbjct: 382 DPSDGSHL 389
tr_hit_id B3JRJ2
Definition tr|B3JRJ2|B3JRJ2_9DELT GAF sensor signal transduction histidine kinase OS=Geobacter sp. M21
Align length 28
Score (bit) 33.5
E-value 9.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955456|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_C08, 5'
         (598 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3JRJ2|B3JRJ2_9DELT GAF sensor signal transduction histidine ...    33   9.6  

>tr|B3JRJ2|B3JRJ2_9DELT GAF sensor signal transduction histidine
           kinase OS=Geobacter sp. M21 GN=GM21DRAFT_0118 PE=4 SV=1
          Length = 552

 Score = 33.5 bits (75), Expect = 9.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 84  RSECYSKSYGEKEGCRKECPVQRVEEEG 1
           R +C++K  GE E CR  CP+Q ++E G
Sbjct: 242 RKKCFAKMRGENEPCR-NCPIQEIKETG 268