DK955458 |
Clone id |
TST39A01NGRL0023_C10 |
Library |
TST39 |
Length |
559 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_C10. 5' end sequence. |
Accession |
DK955458 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL692Contig1 |
Sequence |
TGCTCTTGCGTGCTCTCGCGCCCCTTACCTTTGCGTGTCCTCAGGTCTTTTGCGAGCTTG TGCCAACTCTTCCGCCTCTTTCATGGGTTAGTGCAGGAATTCTCTTGAACATCACCGTTC GCCTTGGCTTGGCATGAATTTGGATATGGCGATTGCCACCTTTTCGTCATCCTCGGCCCA GAATCTCTGTGTGTGCTTGGCACCATCGCAGCATGGTAACTTGTCACGAAGTAGCAATCC CTGCAAAAACTACGAGCGCTTACGAAGGCTTGCAAAGTCATGGGTTGAAGGTGAGGGTGT CTCTTTACGCAAAGCAGTGGATAGCAAAGCCTACGAGACACTGCATGGAGTAATGAAGCC CGGGGTGAGGACTTTGAATTGTCGAGCTGAGCTTGAGTGGCTGGATCATTTGATGCTAGC AGTGGGTGTTGGGCTTCCTTGTACCGTGATGGAATGCGGGGATGTCGTTTACAGAAGTAC TCTACCACGCTCGAATGCCCTCAACATTACACCCCCTGGTGTTCTTCTCACACTCTTTGT GGCATCCTACCTTTGGGCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9S713 |
Definition |
sp|Q9S713|STT7_ARATH Serine/threonine-protein kinase SNT7, chloroplastic OS=Arabidopsis thaliana |
Align length |
70 |
Score (bit) |
86.7 |
E-value |
7.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955458|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_C10, 5' (559 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9S713|STT7_ARATH Serine/threonine-protein kinase SNT7, chlor... 87 7e-17 sp|Q84V18|STT7_CHLRE Serine/threonine-protein kinase stt7, chlor... 40 0.010 sp|A2A690|TANC2_MOUSE Protein TANC2 OS=Mus musculus GN=Tanc2 PE=... 34 0.42 sp|Q9HCD6|TANC2_HUMAN Protein TANC2 OS=Homo sapiens GN=TANC2 PE=... 34 0.42 sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cunicul... 33 0.73 sp|Q5XG71|UTP20_MOUSE Small subunit processome component 20 homo... 33 1.2 sp|Q92502|STAR8_HUMAN StAR-related lipid transfer protein 8 OS=H... 30 6.2 sp|Q88DC4|RSGA_PSEPK Putative ribosome biogenesis GTPase rsgA OS... 30 8.0 sp|O13067|CND2_XENLA Condensin complex subunit 2 OS=Xenopus laev... 30 8.1
>sp|Q9S713|STT7_ARATH Serine/threonine-protein kinase SNT7, chloroplastic OS=Arabidopsis thaliana GN=SNT7 PE=1 SV=1 Length = 562
Score = 86.7 bits (213), Expect = 7e-17 Identities = 43/70 (61%), Positives = 53/70 (75%), Gaps = 2/70 (2%) Frame = +2
Query: 356 KPGVR-TLNCRAEL-EWLDHLMLAVGVGLPCTVMECGDVVYRSTLPRSNALNITPPGVLL 529 KP V+ +CRA+L + + +L + VGVGLPCTVMECGD++YRSTLP+SN L IT PGV L Sbjct: 35 KPTVKLNSSCRAQLIDTVHNLFIGVGVGLPCTVMECGDMIYRSTLPKSNGLTITAPGVAL 94
Query: 530 TLFVASYLWA 559 L SYLWA Sbjct: 95 ALTALSYLWA 104
>sp|Q84V18|STT7_CHLRE Serine/threonine-protein kinase stt7, chloroplastic OS=Chlamydomonas reinhardtii GN=STT7 PE=2 SV=1 Length = 754
Score = 39.7 bits (91), Expect = 0.010 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 9/76 (11%) Frame = +2
Query: 356 KPGVRT-LNCRAELEWLDHLMLAVG------VGLPCTVMECGDVVYRSTLPRS--NALNI 508 +PG R + RA E++D L V + PC VM+CGD+VYRSTL S N Sbjct: 33 RPGQRRGVPARATPEFIDALSALVPNLPLEQIAAPCQVMKCGDIVYRSTLDPSLYNEAGF 92
Query: 509 TPPGVLLTLFVASYLW 556 V L V +YL+ Sbjct: 93 DEKTVALLAPVLAYLF 108
>sp|A2A690|TANC2_MOUSE Protein TANC2 OS=Mus musculus GN=Tanc2 PE=1 SV=1 Length = 1994
Score = 34.3 bits (77), Expect = 0.42 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Frame = -3
Query: 497 HSSVVEYFCKRHPRIPSRYKEAQHPLLASNDPATQAQLDNSKSSPRASLLHAVSRRLC-Y 321 HSS+ C P + R +EA L + Q DN+ + +H V+ LC Sbjct: 423 HSSITSGSCPGTPEMRRRQEEAMRRLASQVVAYHYCQADNAYTCLVPEFVHNVAALLCRS 482
Query: 320 PLLCVKRHPHLQPMTLQAFVSARSFCRD 237 P L R L+ LQ+ +S RS +D Sbjct: 483 PQLTAYREQLLREPHLQSMLSLRSCVQD 510
>sp|Q9HCD6|TANC2_HUMAN Protein TANC2 OS=Homo sapiens GN=TANC2 PE=1 SV=3 Length = 1990
Score = 34.3 bits (77), Expect = 0.42 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Frame = -3
Query: 497 HSSVVEYFCKRHPRIPSRYKEAQHPLLASNDPATQAQLDNSKSSPRASLLHAVSRRLC-Y 321 HSS+ C P + R +EA L + Q DN+ + +H V+ LC Sbjct: 423 HSSITSGSCPGTPEMRRRQEEAMRRLASQVVAYHYCQADNAYTCLVPEFVHNVAALLCRS 482
Query: 320 PLLCVKRHPHLQPMTLQAFVSARSFCRD 237 P L R L+ LQ+ +S RS +D Sbjct: 483 PQLTAYREQLLREPHLQSMLSLRSCVQD 510
>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1 Length = 5037
Score = 33.5 bits (75), Expect = 0.73 Identities = 22/58 (37%), Positives = 28/58 (48%) Frame = +2
Query: 224 SRSSNPCKNYERLRRLAKSWVEGEGVSLRKAVDSKAYETLHGVMKPGVRTLNCRAELE 397 +R++ P +YE LRR A W E EG A + T G +PGV RAE E Sbjct: 1323 ARAAEPDPDYENLRRSAGGWGEAEGGKEGTAKEG----TPGGTPQPGVEAQPVRAENE 1376
>sp|Q5XG71|UTP20_MOUSE Small subunit processome component 20 homolog OS=Mus musculus GN=Utp20 PE=2 SV=2 Length = 2788
Score = 32.7 bits (73), Expect = 1.2 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 10/108 (9%) Frame = +2
Query: 218 NLSRSSNPCKNYERLRRLAKSWV----EGEGVSLRKAVDSKAYETLHGVMKPGVRT---- 373 N +N C+N E++RRL ++++ G G + + D + GV+ ++T Sbjct: 305 NKVTEANCCENSEQMRRLLETYLIVVKHGSGSKITRPAD------VCGVLSEALQTASLS 358
Query: 374 LNCRAE-LEWLDHLMLAVGVGLPCT-VMECGDVVYRSTLPRSNALNIT 511 +CR L+ + L+LA V LP T + E + V+ S R + L+ + Sbjct: 359 TSCRKTLLDVVSALLLAENVSLPETLIKETVEKVFESKFERRSVLDFS 406
>sp|Q92502|STAR8_HUMAN StAR-related lipid transfer protein 8 OS=Homo sapiens GN=STARD8 PE=1 SV=2 Length = 1023
Score = 30.4 bits (67), Expect = 6.2 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +2
Query: 143 DMAIATFSSSSAQNLCVCLAPS-QHGNLSRSSNPCKNYERLRRL 271 D+A A + +A NL VCLAPS H N+S+ +P + R L Sbjct: 704 DIASAEENQMTAGNLAVCLAPSIFHLNVSKKDSPSPRIKSKRSL 747
>sp|Q88DC4|RSGA_PSEPK Putative ribosome biogenesis GTPase rsgA OS=Pseudomonas putida (strain KT2440) GN=rsgA PE=3 SV=1 Length = 343
Score = 30.0 bits (66), Expect = 8.0 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = -3
Query: 464 HPRIPSRYK-EAQH----PLLASNDPATQAQLDNSKSSPRASLLHAVSRRLCYPLLCVKR 300 HP + RY A+H PLL N +A L N ++ P L V R L YPLL V Sbjct: 140 HPNLIDRYLVAAEHAGLRPLLLLN----KADLINDENGPGLHALLEVYRELGYPLLEVSA 195
Query: 299 H 297 H Sbjct: 196 H 196
>sp|O13067|CND2_XENLA Condensin complex subunit 2 OS=Xenopus laevis GN=ncaph PE=1 SV=1 Length = 699
Score = 30.0 bits (66), Expect = 8.1 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -2
Query: 324 LSTALRKETPSPSTHDFASLRKRS*FLQGLLLRDKLPCCDGAKHTQRFWAED--DEKVAI 151 LSTA E PSP + D L +S FLQ + R P G + Q W D +E +++ Sbjct: 269 LSTAEETEPPSPGSMDSTEL--KSLFLQCVEKRPLCPSLSGFRFMQ--WNSDAQNENLSL 324
Query: 150 AISKFMPS 127 + KF S Sbjct: 325 LMDKFKKS 332
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T3J7 |
Definition |
tr|A9T3J7|A9T3J7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
100 |
Score (bit) |
84.0 |
E-value |
5.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955458|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_C10, 5' (559 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T3J7|A9T3J7_PHYPA Predicted protein OS=Physcomitrella paten... 84 5e-15 tr|A7P333|A7P333_VITVI Chromosome chr1 scaffold_5, whole genome ... 81 4e-14 tr|A5B8U6|A5B8U6_VITVI Putative uncharacterized protein OS=Vitis... 81 4e-14 tr|Q0DG76|Q0DG76_ORYSJ Os05g0549100 protein OS=Oryza sativa subs... 78 3e-13 tr|B8AWA3|B8AWA3_ORYSI Putative uncharacterized protein OS=Oryza... 78 3e-13 tr|A3B6I3|A3B6I3_ORYSJ Putative uncharacterized protein OS=Oryza... 78 3e-13 tr|B6SXS7|B6SXS7_MAIZE Serine/threonine-protein kinase SNT7 OS=Z... 78 4e-13 tr|B4FVB8|B4FVB8_MAIZE Putative uncharacterized protein OS=Zea m... 55 2e-06 tr|A9SRW8|A9SRW8_PHYPA Predicted protein OS=Physcomitrella paten... 54 6e-06 tr|A4S3P1|A4S3P1_OSTLU LHCII kinase OS=Ostreococcus lucimarinus ... 49 2e-04 tr|Q010B4|Q010B4_OSTTA Ca2+/calmodulin-dependent protein kinase,... 45 0.003 tr|B6MJH6|B6MJH6_BRAFL Putative uncharacterized protein OS=Branc... 40 0.11 tr|B6PQ47|B6PQ47_BRAFL Putative uncharacterized protein OS=Branc... 38 0.42 tr|B8C105|B8C105_THAPS Predicted protein OS=Thalassiosira pseudo... 37 0.73 tr|B6MDL4|B6MDL4_BRAFL Putative uncharacterized protein OS=Branc... 36 1.6 tr|B6L7U2|B6L7U2_BRAFL Putative uncharacterized protein OS=Branc... 36 1.6 tr|B6L7I6|B6L7I6_BRAFL Putative uncharacterized protein OS=Branc... 36 1.6 tr|B6MUR0|B6MUR0_BRAFL Putative uncharacterized protein OS=Branc... 35 2.7 tr|B6PWH8|B6PWH8_BRAFL Putative uncharacterized protein OS=Branc... 35 3.6 tr|B6MUR2|B6MUR2_BRAFL Putative uncharacterized protein OS=Branc... 35 3.6 tr|B6MJZ6|B6MJZ6_BRAFL Putative uncharacterized protein OS=Branc... 35 3.6 tr|B6L678|B6L678_BRAFL Putative uncharacterized protein OS=Branc... 35 3.6 tr|Q9LEY4|Q9LEY4_ARATH Putative uncharacterized protein T22D6_17... 35 3.6 tr|A2A689|A2A689_MOUSE Tetratricopeptide repeat, ankyrin repeat ... 34 4.6 tr|B6PWJ7|B6PWJ7_BRAFL Putative uncharacterized protein (Fragmen... 34 6.1 tr|B6NQS9|B6NQS9_BRAFL Putative uncharacterized protein OS=Branc... 34 6.1 tr|B6L8B5|B6L8B5_BRAFL Putative uncharacterized protein OS=Branc... 34 6.1 tr|Q6AUF9|Q6AUF9_ORYSJ Os05g0564300 protein OS=Oryza sativa subs... 34 6.2 tr|B8AWR5|B8AWR5_ORYSI Putative uncharacterized protein OS=Oryza... 34 6.2 tr|A1CAL9|A1CAL9_ASPCL Putative uncharacterized protein OS=Asper... 34 6.2
>tr|A9T3J7|A9T3J7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_191307 PE=4 SV=1 Length = 593
Score = 84.0 bits (206), Expect = 5e-15 Identities = 47/100 (47%), Positives = 59/100 (59%), Gaps = 1/100 (1%) Frame = +2
Query: 263 RRLAKSWVEGEGVSLRKAVDSKAYETLHGVMKPGVRTLNCRAEL-EWLDHLMLAVGVGLP 439 ++L W G G+ LR V + G + + + EL E L L++ VGVGLP Sbjct: 36 QKLVGQWPRGLGLGLR--VVGRGLSVRRGTSRRAIVRVRASFELAEHLHGLVVGVGVGLP 93
Query: 440 CTVMECGDVVYRSTLPRSNALNITPPGVLLTLFVASYLWA 559 CTVMECGDVVYRSTLPR IT PGV LT+ + +YLWA Sbjct: 94 CTVMECGDVVYRSTLPR-QGFQITTPGVALTVLIVTYLWA 132
>tr|A7P333|A7P333_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030286001 PE=4 SV=1 Length = 573
Score = 80.9 bits (198), Expect = 4e-14 Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Frame = +2
Query: 356 KPGVRTLNCRAE---LEWLDHLMLAVGVGLPCTVMECGDVVYRSTLPRSNALNITPPGVL 526 K V L C A + + L VGVGLPCTVMECGD++YRSTLPRSN L +T PG + Sbjct: 45 KKAVSNLVCAAGGGFFNLVHDVFLGVGVGLPCTVMECGDIIYRSTLPRSNGLTLTAPGAI 104
Query: 527 LTLFVASYLWA 559 L L SYLWA Sbjct: 105 LALGALSYLWA 115
>tr|A5B8U6|A5B8U6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028784 PE=4 SV=1 Length = 555
Score = 80.9 bits (198), Expect = 4e-14 Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Frame = +2
Query: 356 KPGVRTLNCRAE---LEWLDHLMLAVGVGLPCTVMECGDVVYRSTLPRSNALNITPPGVL 526 K V L C A + + L VGVGLPCTVMECGD++YRSTLPRSN L +T PG + Sbjct: 26 KKAVSNLVCAAGGGFFNLVHDVFLGVGVGLPCTVMECGDIIYRSTLPRSNGLTLTAPGAI 85
Query: 527 LTLFVASYLWA 559 L L SYLWA Sbjct: 86 LALGALSYLWA 96
>tr|Q0DG76|Q0DG76_ORYSJ Os05g0549100 protein OS=Oryza sativa subsp. japonica GN=Os05g0549100 PE=4 SV=1 Length = 559
Score = 78.2 bits (191), Expect = 3e-13 Identities = 36/50 (72%), Positives = 41/50 (82%) Frame = +2
Query: 410 LMLAVGVGLPCTVMECGDVVYRSTLPRSNALNITPPGVLLTLFVASYLWA 559 L+ AVGVGLPCTVM CGDV+YRSTLPR++ L IT PGV L L ASYLW+ Sbjct: 50 LVEAVGVGLPCTVMACGDVIYRSTLPRNDGLTITAPGVALALAAASYLWS 99
>tr|B8AWA3|B8AWA3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20870 PE=4 SV=1 Length = 559
Score = 78.2 bits (191), Expect = 3e-13 Identities = 36/50 (72%), Positives = 41/50 (82%) Frame = +2
Query: 410 LMLAVGVGLPCTVMECGDVVYRSTLPRSNALNITPPGVLLTLFVASYLWA 559 L+ AVGVGLPCTVM CGDV+YRSTLPR++ L IT PGV L L ASYLW+ Sbjct: 50 LVEAVGVGLPCTVMACGDVIYRSTLPRNDGLTITAPGVALALAAASYLWS 99
>tr|A3B6I3|A3B6I3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_018655 PE=4 SV=1 Length = 585
Score = 78.2 bits (191), Expect = 3e-13 Identities = 36/50 (72%), Positives = 41/50 (82%) Frame = +2
Query: 410 LMLAVGVGLPCTVMECGDVVYRSTLPRSNALNITPPGVLLTLFVASYLWA 559 L+ AVGVGLPCTVM CGDV+YRSTLPR++ L IT PGV L L ASYLW+ Sbjct: 50 LVEAVGVGLPCTVMACGDVIYRSTLPRNDGLTITAPGVALALAAASYLWS 99
>tr|B6SXS7|B6SXS7_MAIZE Serine/threonine-protein kinase SNT7 OS=Zea mays PE=2 SV=1 Length = 562
Score = 77.8 bits (190), Expect = 4e-13 Identities = 35/50 (70%), Positives = 41/50 (82%) Frame = +2
Query: 410 LMLAVGVGLPCTVMECGDVVYRSTLPRSNALNITPPGVLLTLFVASYLWA 559 L+ AVGVGLPCTVM+CGDV+YRSTLPR++ L IT PGV L L SYLW+ Sbjct: 53 LVEAVGVGLPCTVMQCGDVIYRSTLPRNDGLTITAPGVTLALATVSYLWS 102
>tr|B4FVB8|B4FVB8_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 497
Score = 55.5 bits (132), Expect = 2e-06 Identities = 23/37 (62%), Positives = 29/37 (78%) Frame = +2
Query: 449 MECGDVVYRSTLPRSNALNITPPGVLLTLFVASYLWA 559 M+CGDV+YRSTLPR++ L IT PG+ L L SYLW+ Sbjct: 1 MQCGDVIYRSTLPRNDGLTITAPGLTLALATVSYLWS 37
>tr|A9SRW8|A9SRW8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_187748 PE=4 SV=1 Length = 497
Score = 53.9 bits (128), Expect = 6e-06 Identities = 25/37 (67%), Positives = 28/37 (75%) Frame = +2
Query: 449 MECGDVVYRSTLPRSNALNITPPGVLLTLFVASYLWA 559 MECGDVVYRSTLPR IT PGV LT+ + +YLWA Sbjct: 1 MECGDVVYRSTLPR-QGFQITTPGVALTVLIVTYLWA 36
>tr|A4S3P1|A4S3P1_OSTLU LHCII kinase OS=Ostreococcus lucimarinus (strain CCE9901) GN=STT7 PE=4 SV=1 Length = 612
Score = 48.9 bits (115), Expect = 2e-04 Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 4/49 (8%) Frame = +2
Query: 416 LAVGVGLPCTVMECGDVVYRSTLP----RSNALNITPPGVLLTLFVASY 550 +AVGVGLPCTV CGD +YRSTL R A +TP G + A+Y Sbjct: 80 VAVGVGLPCTVQNCGDAIYRSTLDAELRREIAPLLTPVGATILAVAATY 128
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