DK955461 |
Clone id |
TST39A01NGRL0023_C13 |
Library |
TST39 |
Length |
546 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_C13. 5' end sequence. |
Accession |
DK955461 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL204Contig2 |
Sequence |
GGGTTCGGCATATCCTTTTCTCTCCGTCGCAGCGCTCCAACCTCCGTCCCTGTGTAGCTT CCCGTCTGTCAAAATGCGCGAGATTCTACATGTGCAAGGGGGGCAATGCGGCAACCAGAT CGGCGCCAAGTTCTGGGAGGTGGTGTGCACAGAGCACGGCATTGACCCAACGGGGACATA CAGCGGGGACTCCGACATTCAGCTAGAGCGCGTCAATGTGTACTACAATGAGGCGAGCTG CGGGAGGTACGTGCCCCGCGCTGTTCTCATGGATCTGGAGCCGGGAACCATGGATAGCGT CCGCACTGGTCCCTATGGCCAGATCTTTCGCCCCGACAACTTCGTCTTCGGCCAGTCTGG AGCTGGTAATAACTGGGCCAAGGGCCACTACACTGAAGGCGCCGAGCTCATCGACTCCGT CCTCGATGTCGTCCGCAAGGAAGCCGAGAACTGTGACTGCCTTCAAGGCTTTCAAGTGTG CCATTCACTTGGTGGAGGTACTGGGTCTGGAATGGGGACACTTTTAATTTCCAAAGTCAG GGAGGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q41783 |
Definition |
sp|Q41783|TBB6_MAIZE Tubulin beta-6 chain OS=Zea mays |
Align length |
157 |
Score (bit) |
289.0 |
E-value |
7.0e-78 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4FTM1 |
Definition |
tr|B4FTM1|B4FTM1_MAIZE Putative uncharacterized protein OS=Zea mays |
Align length |
163 |
Score (bit) |
293.0 |
E-value |
4.0e-78 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955461|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_C13, 5' (546 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B4FTM1|B4FTM1_MAIZE Putative uncharacterized protein OS=Zea m... 293 4e-78 tr|B8AAY0|B8AAY0_ORYSI Putative uncharacterized protein OS=Oryza... 292 7e-78 tr|Q65C77|Q65C77_SETVI Beta tubulin OS=Setaria viridis GN=tub1 P... 289 8e-77 tr|Q0JIE9|Q0JIE9_ORYSJ cDNA clone:J023126C19, full insert sequen... 289 8e-77 tr|B8AY97|B8AY97_ORYSI Putative uncharacterized protein OS=Oryza... 289 8e-77 tr|B7ZZ40|B7ZZ40_MAIZE Putative uncharacterized protein OS=Zea m... 289 8e-77 tr|A3B412|A3B412_ORYSJ Putative uncharacterized protein OS=Oryza... 289 8e-77 tr|A7PG08|A7PG08_VITVI Chromosome chr6 scaffold_15, whole genome... 288 1e-76 tr|A5CFY4|A5CFY4_HORVD Beta tubulin 1 OS=Hordeum vulgare var. di... 288 1e-76 tr|Q64FU2|Q64FU2_QUEPE TUB8 OS=Quercus petraea PE=2 SV=1 287 3e-76 tr|Q2TFP1|Q2TFP1_SOYBN Tubulin B4 OS=Glycine max PE=2 SV=1 287 3e-76 tr|Q0DI63|Q0DI63_ORYSJ Os05g0413200 protein OS=Oryza sativa subs... 287 3e-76 tr|B6T505|B6T505_MAIZE Tubulin beta-4 chain OS=Zea mays PE=2 SV=1 286 4e-76 tr|A9PEU3|A9PEU3_POPTR Putative uncharacterized protein OS=Popul... 286 4e-76 tr|Q9ASR0|Q9ASR0_ARATH AT5g62700/MRG21_12 OS=Arabidopsis thalian... 286 5e-76 tr|A9PHP0|A9PHP0_POPTR Putative uncharacterized protein OS=Popul... 286 5e-76 tr|A5ATG8|A5ATG8_VITVI Putative uncharacterized protein (Chromos... 286 5e-76 tr|Q0JNK3|Q0JNK3_ORYSJ cDNA clone:J033132F08, full insert sequen... 286 6e-76 tr|B2BXR5|B2BXR5_9ROSI BTub-1 OS=Cleome spinosa GN=BTub-1 PE=4 SV=1 286 6e-76 tr|B1PBW1|B1PBW1_GOSHI Beta-tubulin 10 OS=Gossypium hirsutum PE=... 286 6e-76 tr|A7QIU1|A7QIU1_VITVI Chromosome chr2 scaffold_105, whole genom... 286 6e-76 tr|A7KQH4|A7KQH4_EUCGR Beta-tubulin OS=Eucalyptus grandis GN=TUB... 286 6e-76 tr|A5CFZ1|A5CFZ1_HORVD Beta tubulin 8 OS=Hordeum vulgare var. di... 286 6e-76 tr|A5CFY9|A5CFY9_HORVD Beta tubulin 6 OS=Hordeum vulgare var. di... 286 6e-76 tr|A5CFY7|A5CFY7_HORVD Beta tubulin 4 OS=Hordeum vulgare var. di... 286 6e-76 tr|A2WNJ7|A2WNJ7_ORYSI Putative uncharacterized protein OS=Oryza... 286 6e-76 tr|B1PBW6|B1PBW6_GOSHI Beta-tubulin 16 OS=Gossypium hirsutum PE=... 285 8e-76 tr|A9PHV5|A9PHV5_POPTR Putative uncharacterized protein OS=Popul... 285 1e-75 tr|Q8RU83|Q8RU83_GOSHI Tubulin beta-1 (Beta-tubulin) OS=Gossypiu... 284 2e-75 tr|Q65C76|Q65C76_SETVI Beta tubulin OS=Setaria viridis GN=tub2 P... 284 2e-75
>tr|B4FTM1|B4FTM1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 496
Score = 293 bits (750), Expect = 4e-78 Identities = 138/163 (84%), Positives = 144/163 (88%) Frame = +2
Query: 56 SFPSVKMREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYSGDSDIQLERVNVYYNEA 235 S S KMREILH+QGGQCGNQIGAKFWEVVC EHGIDPTG Y+G+SD+QLERVNVYYNEA Sbjct: 45 SHTSAKMREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEA 104
Query: 236 SCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 415 SCGR+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID Sbjct: 105 SCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 164
Query: 416 SVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKVRE 544 SVLDVVRKEAENCDCLQGFQVCH ISK+RE Sbjct: 165 SVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 207
>tr|B8AAY0|B8AAY0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04129 PE=4 SV=1 Length = 496
Score = 292 bits (748), Expect = 7e-78 Identities = 137/160 (85%), Positives = 143/160 (89%) Frame = +2
Query: 65 SVKMREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYSGDSDIQLERVNVYYNEASCG 244 S KMREILH+QGGQCGNQIGAKFWEVVC EHGIDPTG Y+G+SD+QLERVNVYYNEASCG Sbjct: 47 SAKMREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCG 106
Query: 245 RYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 424 R+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL Sbjct: 107 RFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 166
Query: 425 DVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKVRE 544 DVVRKEAENCDCLQGFQVCH ISK+RE Sbjct: 167 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 206
>tr|Q65C77|Q65C77_SETVI Beta tubulin OS=Setaria viridis GN=tub1 PE=3 SV=1 Length = 448
Score = 289 bits (739), Expect = 8e-77 Identities = 135/157 (85%), Positives = 141/157 (89%) Frame = +2
Query: 74 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYSGDSDIQLERVNVYYNEASCGRYV 253 MREILH+QGGQCGNQIGAKFWEVVC EHGIDPTG Y+G+SD+QLERVNVYYNEASCGR+V Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60
Query: 254 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 433 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 434 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKVRE 544 RKEAENCDCLQGFQVCH ISK+RE Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157
>tr|Q0JIE9|Q0JIE9_ORYSJ cDNA clone:J023126C19, full insert sequence OS=Oryza sativa subsp. japonica GN=Os01g0805900 PE=2 SV=1 Length = 447
Score = 289 bits (739), Expect = 8e-77 Identities = 135/157 (85%), Positives = 141/157 (89%) Frame = +2
Query: 74 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYSGDSDIQLERVNVYYNEASCGRYV 253 MREILH+QGGQCGNQIGAKFWEVVC EHGIDPTG Y+G+SD+QLERVNVYYNEASCGR+V Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60
Query: 254 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 433 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 434 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKVRE 544 RKEAENCDCLQGFQVCH ISK+RE Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157
>tr|B8AY97|B8AY97_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19960 PE=4 SV=1 Length = 624
Score = 289 bits (739), Expect = 8e-77 Identities = 135/158 (85%), Positives = 141/158 (89%) Frame = +2
Query: 71 KMREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYSGDSDIQLERVNVYYNEASCGRY 250 KMREILH+QGGQCGNQIG+KFWEVVC EHGIDPTG Y+G SD+QLERVNVYYNEASCGR+ Sbjct: 180 KMREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCGRF 239
Query: 251 VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 430 VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV Sbjct: 240 VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 299
Query: 431 VRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKVRE 544 VRKEAENCDCLQGFQVCH ISK+RE Sbjct: 300 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 337
>tr|B7ZZ40|B7ZZ40_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 446
Score = 289 bits (739), Expect = 8e-77 Identities = 135/157 (85%), Positives = 141/157 (89%) Frame = +2
Query: 74 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYSGDSDIQLERVNVYYNEASCGRYV 253 MREILH+QGGQCGNQIGAKFWEVVC EHGIDPTG Y+G+SD+QLERVNVYYNEASCGR+V Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60
Query: 254 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 433 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 434 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKVRE 544 RKEAENCDCLQGFQVCH ISK+RE Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157
>tr|A3B412|A3B412_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_017784 PE=3 SV=1 Length = 624
Score = 289 bits (739), Expect = 8e-77 Identities = 135/158 (85%), Positives = 141/158 (89%) Frame = +2
Query: 71 KMREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYSGDSDIQLERVNVYYNEASCGRY 250 KMREILH+QGGQCGNQIG+KFWEVVC EHGIDPTG Y+G SD+QLERVNVYYNEASCGR+ Sbjct: 180 KMREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCGRF 239
Query: 251 VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 430 VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV Sbjct: 240 VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 299
Query: 431 VRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKVRE 544 VRKEAENCDCLQGFQVCH ISK+RE Sbjct: 300 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 337
>tr|A7PG08|A7PG08_VITVI Chromosome chr6 scaffold_15, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017326001 PE=3 SV=1 Length = 446
Score = 288 bits (737), Expect = 1e-76 Identities = 135/157 (85%), Positives = 141/157 (89%) Frame = +2
Query: 74 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYSGDSDIQLERVNVYYNEASCGRYV 253 MREILHVQGGQCGNQIG+KFWEVVC EHGIDPTG Y+G+SD+QLERVNVYYNEASCGR+V Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60
Query: 254 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 433 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 434 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKVRE 544 RKEAENCDCLQGFQVCH ISK+RE Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157
>tr|A5CFY4|A5CFY4_HORVD Beta tubulin 1 OS=Hordeum vulgare var. distichum GN=tub1 PE=2 SV=1 Length = 447
Score = 288 bits (737), Expect = 1e-76 Identities = 135/157 (85%), Positives = 140/157 (89%) Frame = +2
Query: 74 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYSGDSDIQLERVNVYYNEASCGRYV 253 MREILH+QGGQCGNQIGAKFWEVVC EHGIDPTG Y+G SD+QLERVNVYYNEASCGR+V Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60
Query: 254 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 433 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 434 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKVRE 544 RKEAENCDCLQGFQVCH ISK+RE Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157
>tr|Q64FU2|Q64FU2_QUEPE TUB8 OS=Quercus petraea PE=2 SV=1 Length = 446
Score = 287 bits (734), Expect = 3e-76 Identities = 133/157 (84%), Positives = 139/157 (88%) Frame = +2
Query: 74 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYSGDSDIQLERVNVYYNEASCGRYV 253 MREILH+QGGQCGNQIGAKFWEVVC EHGIDPTG Y GDSD+QLER+NVYYNEASCGRYV Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGKYQGDSDLQLERINVYYNEASCGRYV 60
Query: 254 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 433 PRAVLMDLEPGTMDS+R+G YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV Sbjct: 61 PRAVLMDLEPGTMDSIRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 434 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKVRE 544 RKEAENCDCLQGFQVCH ISK+RE Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157
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