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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955462
Clone id TST39A01NGRL0023_C14
Library
Length 750
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_C14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GCCAGGTGCACAGGGGGCAGTGCAATGTGGAGCGCACGTTCTGCCTGGTAGAGGCGGATG
CGGTGGGGGCGTTGGCAGAGGTCGTGAGCGGTGAGGGGGGCGCCGCAGAGCAGGCGGCGG
CGCTGATGGCGTTGGCGACTCTGGTGGAGCAAGGTGATGTGGATGTGGAAGAAGGGTGCA
GCGCCTTGGAGCGCGCAGGGGCGTGGAGTGCCATAATCGGGCTGATGGGCAGTAGCACGG
CGCAGGTGCAGGAGAAAGCGGCCCACCTTTGCGAGAAGTTGTTCTCTATTCCACGGTATC
GCACACAGTACGCAGCGCGCGCGCAGATGCACATCATCACACTTGCACAACGGGGTCCTC
CCCCCCTCAAGCAACTGGCGGGCCGCCTCCTGCGCCACCTTGAGCTCCTCCATAGTCAAT
CCAATTACTTCGGTGTTGCATCCGTCACCACTTCCTAGACCCACGCTTTTCTTTTTCATT
TGCACGAGAGGCGCCACAGATGTAATTTAATCGGGGAACCCTGATTCCACGTATGTATCT
GACCTTGGTTCACTTATAAGTGCAGATCTATGCTTATTTGTGCATCTTTGAAGAGGTATT
TCTTTCGCTTCACCCACTTTGCATTTTATGTACTTATTTGTTCACTCCGAACAAAAAATA
ATTTAATAAATTTTTTTAATAAAACATTCCTAGGGGTTTTCCCTTGCCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7V7K6
Definition sp|Q7V7K6|Y737_PROMM Uncharacterized RNA methyltransferase PMT0737 OS=Prochlorococcus marinus (strain MIT 9313)
Align length 72
Score (bit) 32.0
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955462|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_C14, 5'
         (708 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7V7K6|Y737_PROMM Uncharacterized RNA methyltransferase PMT07...    32   3.4  
sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 4...    31   5.7  
sp|Q5N0X9|MUTS_SYNP6 DNA mismatch repair protein mutS OS=Synecho...    30   9.8  
sp|Q31KZ2|MUTS_SYNE7 DNA mismatch repair protein mutS OS=Synecho...    30   9.8  
sp|Q867T7|NCFA_DICDI NADPH oxidase activator OS=Dictyostelium di...    30   9.9  

>sp|Q7V7K6|Y737_PROMM Uncharacterized RNA methyltransferase PMT0737
           OS=Prochlorococcus marinus (strain MIT 9313) GN=PMT0737
           PE=3 SV=1
          Length = 465

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 159 VDVEEGCSALERAGAWSAIIG-LMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHI 335
           +D++   + L R   W  I+  L+   +AQ++            + R+R Q+ AR    I
Sbjct: 24  LDLDRHGNGLARWNNWVVIVNDLLPGESAQIE-----------FVRRHRNQFLARKVQTI 72

Query: 336 ITLAQRGPPPLK 371
            T+A R PPP K
Sbjct: 73  ETVASRRPPPCK 84


>sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 42
           OS=Arabidopsis thaliana GN=PUB42 PE=3 SV=1
          Length = 1033

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 6   VHRGQCNVERTFCLVEAD 59
           +HRG C+ + TFCLVEA+
Sbjct: 888 IHRGVCSAKNTFCLVEAN 905


>sp|Q5N0X9|MUTS_SYNP6 DNA mismatch repair protein mutS
           OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
           SAUG 1402/1) GN=mutS PE=3 SV=1
          Length = 882

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +3

Query: 180 SALERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGP 359
           S L++      + G  G+ TA  ++  A L E L  +P    Q  +RAQ  ++   Q+ P
Sbjct: 379 SLLQKIYDLERLSGRAGAGTANARDLLA-LAESLLRLPEL-AQLLSRAQSPLLAQLQQVP 436

Query: 360 PPLKQL 377
           P L+QL
Sbjct: 437 PELEQL 442


>sp|Q31KZ2|MUTS_SYNE7 DNA mismatch repair protein mutS
           OS=Synechococcus elongatus (strain PCC 7942) GN=mutS
           PE=3 SV=1
          Length = 882

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +3

Query: 180 SALERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGP 359
           S L++      + G  G+ TA  ++  A L E L  +P    Q  +RAQ  ++   Q+ P
Sbjct: 379 SLLQKIYDLERLSGRAGAGTANARDLLA-LAESLLRLPEL-AQLLSRAQSPLLAQLQQVP 436

Query: 360 PPLKQL 377
           P L+QL
Sbjct: 437 PELEQL 442


>sp|Q867T7|NCFA_DICDI NADPH oxidase activator OS=Dictyostelium
           discoideum GN=ncfA PE=2 SV=1
          Length = 604

 Score = 30.4 bits (67), Expect = 9.9
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +1

Query: 361 PPSSNWRAASCATLSSSIVNPITS-VLHPSPLPRPT 465
           PPSS+  ++S ++ SSS ++P+T+  L P P P P+
Sbjct: 258 PPSSSSSSSSSSSSSSSSISPLTNKTLPPKPPPLPS 293
tr_hit_id A9RDS9
Definition tr|A9RDS9|A9RDS9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 143
Score (bit) 70.5
E-value 1.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955462|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_C14, 5'
         (708 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RDS9|A9RDS9_PHYPA Predicted protein OS=Physcomitrella paten...    70   1e-10
tr|A7QWH9|A7QWH9_VITVI Chromosome undetermined scaffold_203, who...    68   5e-10
tr|A5AP45|A5AP45_VITVI Putative uncharacterized protein OS=Vitis...    63   2e-08
tr|Q8GSZ9|Q8GSZ9_ORYSJ cDNA clone:001-131-D10, full insert seque...    60   1e-07
tr|A3A1I3|A3A1I3_ORYSJ Putative uncharacterized protein OS=Oryza...    60   1e-07
tr|A2WZ24|A2WZ24_ORYSI Putative uncharacterized protein OS=Oryza...    60   1e-07
tr|Q93XC9|Q93XC9_TOBAC Armadillo repeat-containing protein (Frag...    59   2e-07
tr|A9T365|A9T365_PHYPA Predicted protein OS=Physcomitrella paten...    59   4e-07
tr|A5AXC6|A5AXC6_VITVI Putative uncharacterized protein OS=Vitis...    59   4e-07
tr|B4FZ83|B4FZ83_MAIZE Putative uncharacterized protein OS=Zea m...    58   5e-07
tr|B4F8Z6|B4F8Z6_MAIZE Putative uncharacterized protein OS=Zea m...    58   5e-07
tr|A7QEZ3|A7QEZ3_VITVI Chromosome chr16 scaffold_86, whole genom...    58   5e-07
tr|A7QRU0|A7QRU0_VITVI Chromosome chr13 scaffold_152, whole geno...    57   1e-06
tr|A5AVE9|A5AVE9_VITVI Putative uncharacterized protein OS=Vitis...    57   1e-06
tr|A7QNU2|A7QNU2_VITVI Chromosome undetermined scaffold_134, who...    56   2e-06
tr|A5BFM8|A5BFM8_VITVI Putative uncharacterized protein OS=Vitis...    56   2e-06
tr|A9T3V6|A9T3V6_PHYPA Predicted protein OS=Physcomitrella paten...    53   2e-05
tr|A9TJW0|A9TJW0_PHYPA Predicted protein OS=Physcomitrella paten...    50   1e-04
tr|A5AWX5|A5AWX5_VITVI Putative uncharacterized protein OS=Vitis...    35   3.7  

>tr|A9RDS9|A9RDS9_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_64745 PE=4 SV=1
          Length = 1099

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 40/143 (27%), Positives = 63/143 (44%)
 Frame = +3

Query: 3    QVHRGQCNVERTFCLVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGDVDVEEGCS 182
            ++H G C +E T+CL+ A+                              +     E GC 
Sbjct: 954  KLHAGVCTIETTYCLIVAEAIHPLLSIVREDDGKITEVALEALYTLLDNE---HWERGCH 1010

Query: 183  ALERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGPP 362
             +  A   S I+  M   TA+ QE + ++CEK F IP Y+  +   +QMHIIT+AQ+  P
Sbjct: 1011 TINEANGISIILQNMPKCTARAQEISINMCEKFFRIPAYQASFGPPSQMHIITIAQQASP 1070

Query: 363  PLKQLAGXXXXXXXXXXSQSNYF 431
              + +AG          +QS+Y+
Sbjct: 1071 STRDVAGRILRQLDLLQTQSHYW 1093


>tr|A7QWH9|A7QWH9_VITVI Chromosome undetermined scaffold_203, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008661001 PE=4 SV=1
          Length = 505

 Score = 68.2 bits (165), Expect = 5e-10
 Identities = 43/142 (30%), Positives = 63/142 (44%)
 Frame = +3

Query: 6   VHRGQCNVERTFCLVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGDVDVEEGCSA 185
           VHRG C++E +FCL+EAD                              +    ++ G   
Sbjct: 367 VHRGICSIESSFCLLEADAVGPLVRVLAEADPQASEASFDALLTLIEGER---LQSGSKV 423

Query: 186 LERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGPPP 365
           L  A A   II  +GSS+  +QEKA +  E++F +  ++ +Y A AQM ++ L QRG   
Sbjct: 424 LADANAIPLIIRSLGSSSPTLQEKALNALERIFRLVEFKQRYGASAQMPLVDLTQRGSSS 483

Query: 366 LKQLAGXXXXXXXXXXSQSNYF 431
            K LA            QS+YF
Sbjct: 484 TKSLAARILAHLNVLHEQSSYF 505


>tr|A5AP45|A5AP45_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022076 PE=4 SV=1
          Length = 967

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 39/125 (31%), Positives = 58/125 (46%)
 Frame = +3

Query: 6   VHRGQCNVERTFCLVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGDVDVEEGCSA 185
           VHRG C++E +FCL+EAD                              +    ++ G   
Sbjct: 396 VHRGICSIESSFCLLEADAVGPLVRVLAEADPQASEASFDALLTLIEGER---LQSGSKV 452

Query: 186 LERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGPPP 365
           L  A A   II  +GSS+  +QEKA +  E++F +  ++ +Y A AQM ++ L QRG   
Sbjct: 453 LADANAIPLIIRSLGSSSPTLQEKALNALERIFRLVEFKQRYGASAQMPLVDLTQRGSSS 512

Query: 366 LKQLA 380
            K LA
Sbjct: 513 TKSLA 517


>tr|Q8GSZ9|Q8GSZ9_ORYSJ cDNA clone:001-131-D10, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0466H10.39 PE=2 SV=1
          Length = 672

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 40/142 (28%), Positives = 60/142 (42%)
 Frame = +3

Query: 6   VHRGQCNVERTFCLVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGDVDVEEGCSA 185
           VH  QC V+ TFCLV+A                                 D   E G   
Sbjct: 534 VHNSQCTVKSTFCLVKAGAVSPLIQILEDDNREADGAVLEALATLMQ---DEIWENGSKV 590

Query: 186 LERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGPPP 365
           +E+A    A++ +  +  +  QEKA  + E++F +  +R +Y   AQ  +I LAQ+G P 
Sbjct: 591 IEKASGVHALLRIAEAGNSTSQEKAIWMLERIFRLEAHRERYGEIAQALLIDLAQKGDPI 650

Query: 366 LKQLAGXXXXXXXXXXSQSNYF 431
           LK + G          +QS+YF
Sbjct: 651 LKPMIGKILAHLELLQTQSSYF 672


>tr|A3A1I3|A3A1I3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004655 PE=4 SV=1
          Length = 537

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 40/142 (28%), Positives = 60/142 (42%)
 Frame = +3

Query: 6   VHRGQCNVERTFCLVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGDVDVEEGCSA 185
           VH  QC V+ TFCLV+A                                 D   E G   
Sbjct: 399 VHNSQCTVKSTFCLVKAGAVSPLIQILEDDNREADGAVLEALATLMQ---DEIWENGSKV 455

Query: 186 LERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGPPP 365
           +E+A    A++ +  +  +  QEKA  + E++F +  +R +Y   AQ  +I LAQ+G P 
Sbjct: 456 IEKASGVHALLRIAEAGNSTSQEKAIWMLERIFRLEAHRERYGEIAQALLIDLAQKGDPI 515

Query: 366 LKQLAGXXXXXXXXXXSQSNYF 431
           LK + G          +QS+YF
Sbjct: 516 LKPMIGKILAHLELLQTQSSYF 537


>tr|A2WZ24|A2WZ24_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05191 PE=4 SV=1
          Length = 600

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 40/142 (28%), Positives = 60/142 (42%)
 Frame = +3

Query: 6   VHRGQCNVERTFCLVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGDVDVEEGCSA 185
           VH  QC V+ TFCLV+A                                 D   E G   
Sbjct: 462 VHNSQCTVKSTFCLVKAGVVSPLIQILEDDNREADGAVLEALATLMQ---DEIWENGSKV 518

Query: 186 LERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGPPP 365
           +E+A    A++ +  +  +  QEKA  + E++F +  +R +Y   AQ  +I LAQ+G P 
Sbjct: 519 IEKASGVHALLRIAEAGNSTSQEKAIWMLERIFRLEAHRERYGEIAQALLIDLAQKGDPI 578

Query: 366 LKQLAGXXXXXXXXXXSQSNYF 431
           LK + G          +QS+YF
Sbjct: 579 LKPMIGKILAHLELLQTQSSYF 600


>tr|Q93XC9|Q93XC9_TOBAC Armadillo repeat-containing protein
           (Fragment) OS=Nicotiana tabacum GN=HBP2 PE=2 SV=1
          Length = 502

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 40/142 (28%), Positives = 60/142 (42%)
 Frame = +3

Query: 6   VHRGQCNVERTFCLVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGDVDVEEGCSA 185
           VH G C+VE TFCLVEA+                                   ++ G   
Sbjct: 364 VHLGICSVESTFCLVEANALRPLAEVLDDPDPAASEASLDAILTIIEG---AQLQNGSKL 420

Query: 186 LERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGPPP 365
           L  A A + II L+ SS+  +QEKA    E++F +   + +Y   AQM ++ + Q+G   
Sbjct: 421 LAEANAIAPIIKLLSSSSIVLQEKALKALERIFRMIEMKQKYGISAQMPLVEITQKGRND 480

Query: 366 LKQLAGXXXXXXXXXXSQSNYF 431
           +K LA            QS++F
Sbjct: 481 MKSLAAKVLAHLNVLPEQSSFF 502


>tr|A9T365|A9T365_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_87474 PE=4 SV=1
          Length = 1020

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 39/142 (27%), Positives = 56/142 (39%)
 Frame = +3

Query: 6    VHRGQCNVERTFCLVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGDVDVEEGCSA 185
            +H G C V+ TFCLV A                                 D  +E G   
Sbjct: 881  IHGGPCTVKSTFCLVMAQAVLPLVQALEEQEDGADDAALTALRTLLL--NDATLENGVKV 938

Query: 186  LERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGPPP 365
            + +A     I+ L+   +  V+EKA  + EK+F I  Y+ ++ + AQM +I L Q G   
Sbjct: 939  IAQAQGIRPIVRLLTVGSVDVKEKAVWMLEKIFRIEEYKVEFGSAAQMPLIDLTQNGSIV 998

Query: 366  LKQLAGXXXXXXXXXXSQSNYF 431
             + LA           SQS YF
Sbjct: 999  TRPLAAKILAHLNILHSQSTYF 1020


>tr|A5AXC6|A5AXC6_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_002920 PE=4 SV=1
          Length = 939

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 39/143 (27%), Positives = 60/143 (41%)
 Frame = +3

Query: 3    QVHRGQCNVERTFCLVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGDVDVEEGCS 182
            +VH G C VE +FCL+EA+                              +    ++ G  
Sbjct: 800  RVHLGICTVESSFCLLEANAVEPLVRVLVEPDVGACEASLDALLTLIDGER---LQNGSK 856

Query: 183  ALERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGPP 362
             L    A   II L+ SS  ++QEKA    E++F +  ++ +Y   AQM ++ + QRG  
Sbjct: 857  VLSEVNAIVPIIRLLSSSCTKLQEKALKALERIFRLIDFKQKYGNLAQMPLVDITQRGQG 916

Query: 363  PLKQLAGXXXXXXXXXXSQSNYF 431
             +K LA            QS+YF
Sbjct: 917  GMKSLAAKVLAHLDVLHEQSSYF 939


>tr|B4FZ83|B4FZ83_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 398

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 40/142 (28%), Positives = 59/142 (41%)
 Frame = +3

Query: 6   VHRGQCNVERTFCLVEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGDVDVEEGCSA 185
           VH  QC V+ TFCLV+A                                 D   E G   
Sbjct: 260 VHSCQCTVKSTFCLVKAGAVHPLVQTLEGEERGADGAALEALGTLME---DEVWENGSRV 316

Query: 186 LERAGAWSAIIGLMGSSTAQVQEKAAHLCEKLFSIPRYRTQYAARAQMHIITLAQRGPPP 365
           +ERA    A++ +  +     Q+KA  + E++F +  +R +Y   AQ  +I LAQ+G P 
Sbjct: 317 IERASGIHALLRIAEAGEPSSQDKAIWMLERMFRLEAHRERYGEIAQALLIDLAQKGDPA 376

Query: 366 LKQLAGXXXXXXXXXXSQSNYF 431
           LK + G          +QS+YF
Sbjct: 377 LKPMIGKILAHLELLQTQSSYF 398