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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955466
Clone id TST39A01NGRL0023_C18
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_C18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGTGTGTGTGTGAGAGAGAGAGTGGGAGAGAGAGAGAGAGAGATGGCTTCCAGTAAGGG
CATAGTCGCACTGTTCCTGGTGCTCATGGTCTCTTTGGCCGGACTGATGGGTGCCGCCGC
GCAGCCTCCTCCTCCGGCTCTGCAGTGCACTCCCCTGCTAAACCTTGTGCCGGCTTGCCA
GGCTTTAACTCTCTTCCCCGCCCTTGCCCCAGTGCTCACCTCCGTCTGCTGCAACGCTCT
CTCCACCGCCAACCTCCTGGGCGTAGGACTGGGTCCCAACGCCATCTGCCTCTGCGTGAA
GCTCACCTTGCCCAACCTATCGCTCACCACCTGCCCTGGCCTCAGCATCGACCTCGCCCG
CATCATCTTCGGCTCCAACGGAAGCTGCGTCTGATCTCCTACATCGTCAGCCTGCAGCAG
CTTCATGCAGTTCTGTTCATGTCTTGTTGTATTTCTGTATGCGGATTTTATGTTCTCCGC
CATGCTAGCTCGTTTCTGTACTACCTTGTAGATTTGGATTGATGCTTTGTTCTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8K3T3
Definition sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spalax judaei
Align length 38
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955466|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_C18, 5'
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spala...    32   1.9  
sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis ...    32   2.5  
sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2    31   3.3  
sp|O15534|PER1_HUMAN Period circadian protein homolog 1 OS=Homo ...    30   7.3  
sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4 O...    30   9.7  
sp|Q6ZPF4|FMNL3_MOUSE Formin-like protein 3 OS=Mus musculus GN=F...    30   9.7  

>sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spalax
            judaei GN=PER1 PE=2 SV=1
          Length = 1285

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 301  LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES 188
            L +E DG+G +    E GGGE     GG   G+GGEE+
Sbjct: 1212 LFSELDGLGLEP--MEEGGGEGGGGGGGGGEGEGGEEA 1247


>sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis
           thaliana GN=TCP14 PE=2 SV=1
          Length = 489

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -3

Query: 265 YAQEVGGGESVAADGGEHWGK--------GGEES*SLASRHKV*QGSALQSRRRRLRGGT 110
           Y   V G  S A   G H+           G++  +  S H++ + S      R   GG 
Sbjct: 381 YRSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINEDSNNNEGGRSDGGGD 440

Query: 109 HQSGQRDHEHQEQ 71
           H + QR H HQ+Q
Sbjct: 441 HHNTQRHHHHQQQ 453


>sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2
          Length = 2362

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -3

Query: 268 SYAQEVGGGESVAADGGEHWGKGGEES*S----LASRHKV*QGSALQSRRRRLRGGTHQS 101
           S +Q+ GGG   +   GEH    G  S S      SRH    G     R +    G H S
Sbjct: 577 SGSQQHGGGSGQSTGFGEHESSSGHSSSSGQHRSGSRHSSGSGKHESGRSQSSGSGHHGS 636

Query: 100 GQRDH 86
           G + H
Sbjct: 637 GSQQH 641


>sp|O15534|PER1_HUMAN Period circadian protein homolog 1 OS=Homo
            sapiens GN=PER1 PE=1 SV=2
          Length = 1290

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -3

Query: 301  LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES 188
            L +E DG+G +    E GGGE  ++ GG   G+G EE+
Sbjct: 1219 LFSELDGLGLEP--MEEGGGEQGSSGGGSGEGEGCEEA 1254


>sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4
           OS=Homo sapiens GN=TSPYL4 PE=2 SV=2
          Length = 414

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
 Frame = -1

Query: 534 ENKASIQIYKVVQKRASMAENIKSAYRNTTRHEQNCMKLLQADD--------VGDQTQLP 379
           E  A+++  KVVQK   +A  +K   R       NCM  L+A D          D+  L 
Sbjct: 168 EAGAAMEEKKVVQKEKKVAGGVKEETRPRAPKINNCMDSLEAIDQELSNVNAQADRAFLQ 227

Query: 378 LEPKMMRARSM 346
           LE K  R R +
Sbjct: 228 LERKFGRMRRL 238


>sp|Q6ZPF4|FMNL3_MOUSE Formin-like protein 3 OS=Mus musculus
           GN=Fmnl3 PE=2 SV=2
          Length = 1028

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = -1

Query: 516 QIYKVVQKRASMAENIKSAYRNTTRHEQNCMKLLQADDVGDQTQLPLEPKMMRARSMLRP 337
           ++ K + +R    E+IK  Y NT+       +L++  +   Q +  LEP    AR +   
Sbjct: 425 ELEKQLLQREKELESIKETYENTSNQVHTLRRLIKEKEEAFQRRCHLEPS---ARGLESM 481

Query: 336 GQVVSDRLGKVSFTQ 292
           G     R+G    T+
Sbjct: 482 GGEALARVGPTELTE 496
tr_hit_id Q3JSX2
Definition tr|Q3JSX2|Q3JSX2_BURP1 Putative uncharacterized protein OS=Burkholderia pseudomallei (strain 1710b)
Align length 75
Score (bit) 35.4
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955466|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_C18, 5'
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3JSX2|Q3JSX2_BURP1 Putative uncharacterized protein OS=Burkh...    35   1.8  
tr|Q0F377|Q0F377_9PROT TraG OS=Mariprofundus ferrooxydans PV-1 G...    35   1.9  
tr|B7P201|B7P201_IXOSC Ran GTPase-activating protein, putative O...    34   5.4  
tr|B1XZJ9|B1XZJ9_LEPCP Putative metal dependent phosphohydrolase...    34   5.5  
tr|B2GI14|B2GI14_KOCRD Two-component histidine kinase OS=Kocuria...    33   7.0  
tr|B4FTS4|B4FTS4_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.0  
tr|B7PKX0|B7PKX0_IXOSC Secreted protein, putative OS=Ixodes scap...    33   7.0  
tr|A4QVP0|A4QVP0_MAGGR Putative uncharacterized protein OS=Magna...    33   7.2  
tr|B0WTH2|B0WTH2_CULQU Putative uncharacterized protein OS=Culex...    33   9.2  
tr|Q5NXI6|Q5NXI6_AZOSE Putative uncharacterized protein OS=Azoar...    33   9.3  
tr|A4RJF9|A4RJF9_MAGGR Putative uncharacterized protein OS=Magna...    33   9.3  

>tr|Q3JSX2|Q3JSX2_BURP1 Putative uncharacterized protein
           OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_1933 PE=4 SV=1
          Length = 1038

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = -3

Query: 259 QEVGGGESVAADGGEHWGK-----GGEES*SLASRHKV*QGSALQSRRRRLRGGTHQSGQ 95
           +  G G   A DG E  G+     GG    +   RH+   G     RRR   G   ++G 
Sbjct: 582 ERAGDGRHEAGDGRERAGRARRAAGGAGECAGDRRHEARDGRERARRRRAAGGAGERAGD 641

Query: 94  RDHEHQEQCDYALTG 50
           R H+ +E+C+    G
Sbjct: 642 RRHDVRERCERGARG 656


>tr|Q0F377|Q0F377_9PROT TraG OS=Mariprofundus ferrooxydans PV-1
           GN=SPV1_04568 PE=4 SV=1
          Length = 974

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = -1

Query: 417 LQADDVGDQTQLPLEPKMMRARSMLRPGQVVSDRLGKVSFTQRQMALGPSPTPRRLAVER 238
           +  D  GD      E +M  A   L PG  VSD  G V   QR+  L PS  P    V++
Sbjct: 790 MDIDIDGDGRVAGWEAEMQEATGTLEPGHRVSDPTGTVDHKQREADLDPSKQPALPHVDQ 849

Query: 237 ALQQTE 220
            +   E
Sbjct: 850 KISDAE 855


>tr|B7P201|B7P201_IXOSC Ran GTPase-activating protein, putative
           OS=Ixodes scapularis GN=IscW_ISCW016093 PE=4 SV=1
          Length = 527

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +2

Query: 200 ALAPVLTSVCCNALSTANLLGVGLGPNAICLCVKLTLPNLSLTTCPGLSIDLARIIFGSN 379
           AL P+L+S CC  L T  L   GLGP    L  K     L+ +   G  + L  ++ G N
Sbjct: 132 ALVPLLSSPCCFQLKTLLLNNNGLGPGGAELLAKALGACLAESRKAGTPLQLRTLVCGRN 191


>tr|B1XZJ9|B1XZJ9_LEPCP Putative metal dependent phosphohydrolase
           OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 /
           SP-6) GN=Lcho_4311 PE=4 SV=1
          Length = 408

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 381 PLEPKMMRARSMLRPGQVVSDRLGKVSFTQRQMALGPSPTPRRLAVERALQQTE 220
           P+   M+RA  +  PG VV  R G+++   R+ A GP+P    ++  R +   E
Sbjct: 299 PIATAMLRAIGIFPPGDVVQLRSGEIAVVTRRAAKGPAPLAASVSNARGVPVLE 352


>tr|B2GI14|B2GI14_KOCRD Two-component histidine kinase OS=Kocuria
           rhizophila (strain ATCC 9341 / DSM 348 / NBRC 12708 /
           DC2201) GN=KRH_21790 PE=4 SV=1
          Length = 400

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +2

Query: 173 ACQALTLFPALAPVLTSVCCNALSTANLLGVGLGPNAICL----CVKLTLPNLSLT 328
           AC     F  + PV T+ C  ALS   LL + + P  +CL    CV  T   LS T
Sbjct: 49  ACWIPLFFRRVNPVATAYCVGALSLLGLLVLNVAPIGLCLWAVPCVVYTAAKLSPT 104


>tr|B4FTS4|B4FTS4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 251

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = -3

Query: 301 LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES*SLASRHKV*QGSALQSRRRRL 122
           ++   DG GT       GGG S +A  G     GG +S            S  +SRRRR+
Sbjct: 184 VYVTTDGNGTTDAGDADGGGGSPSAGSGSSGSSGGSKS-----------TSGAESRRRRM 232

Query: 121 RGG 113
            GG
Sbjct: 233 TGG 235


>tr|B7PKX0|B7PKX0_IXOSC Secreted protein, putative OS=Ixodes
           scapularis GN=IscW_ISCW005695 PE=4 SV=1
          Length = 235

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 13/49 (26%)
 Frame = +2

Query: 260 GVGLGPNAICLCVKLTLPNL---------SLTTCP----GLSIDLARII 367
           G+ + P+A   C+ +TLPN+         +L TCP    GL +DLARI+
Sbjct: 14  GLLISPSANAKCINVTLPNVLNLGSCLGPTLVTCPDTSDGLLVDLARIL 62


>tr|A4QVP0|A4QVP0_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_04405 PE=4 SV=1
          Length = 654

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
 Frame = -1

Query: 477 ENIKSAYRNTTRHEQNCMKLLQADDVGDQTQLP-LEPKMMRARSMLRPGQVVSDRLGKVS 301
           EN++   R ++R +Q    +  A  + D    P L     +A S  + G+  S    K  
Sbjct: 316 ENLRPRSRPSSRQQQRKEPVQTAPSLDDAEAFPSLGAASAKATSKKQHGKRSSQGHHKEG 375

Query: 300 FTQRQMA----LGPSPTPRRLAVERALQQTEVSTGARAGKRVKAWQA 172
                +A    + PSPTP    V R + +T  ST  R G+   A Q+
Sbjct: 376 LISSSLADIVKMSPSPTPEAKLVSRKMGRTVSSTSIRNGENSAAAQS 422


>tr|B0WTH2|B0WTH2_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ010148 PE=4 SV=1
          Length = 1133

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 23/70 (32%), Positives = 31/70 (44%)
 Frame = -3

Query: 277 GTQSYAQEVGGGESVAADGGEHWGKGGEES*SLASRHKV*QGSALQSRRRRLRGGTHQSG 98
           G   Y  EVGGG  V+ DG E  G GG  S +  S  +      L+ R   ++     S 
Sbjct: 233 GLDEYGFEVGGGARVSRDGLERTGSGGSGSHAKLSMSEARNEEVLR-RVAEMQKMVESSE 291

Query: 97  QRDHEHQEQC 68
           +  +EH E C
Sbjct: 292 RYLNEHGEYC 301


>tr|Q5NXI6|Q5NXI6_AZOSE Putative uncharacterized protein OS=Azoarcus
           sp. (strain EbN1) GN=AZOSEA41030 PE=4 SV=1
          Length = 692

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -1

Query: 273 PSPT-PRRLAVERALQQTEVSTGARAGKRVKAWQAGTRFSRGVHCRXXXXXXXXAPISPA 97
           P+PT P   AV   +Q  ++ T    G R  AW      +RG+  R         P+ PA
Sbjct: 123 PAPTLPALAAVAEGVQDLDLITDVGPGLRAPAWPHTPPAARGLVAR-------QQPMQPA 175

Query: 96  KETMSTRNSATMPLLEA 46
           +  M  R  +  PL  A
Sbjct: 176 RTPMRARQQSAAPLATA 192