DK955467 |
Clone id |
TST39A01NGRL0023_C19 |
Library |
TST39 |
Length |
507 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_C19. 5' end sequence. |
Accession |
DK955467 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL31Contig1 |
Sequence |
GTGAAGGCACGCTCTAACAACGTGAAGCCATGGCGCGCGGTCTCAAGAAACATCTGAAAC GTCTCAATGCCCCGAGGCACTGGATGCTTGACAAGCTCGGTGGTGCCTTTGCGCCCAAGC CCTCTGCCGGACCCCATAAGACCAGGGAATGTCTGCCGATGGTTGTCTTGTTGAGGAATC GGCTGAAGTATGCCTTGACCTATCGTGAAGTGGTTGCCATTGTGATGCAGCGACTCATCT CTGTGGATGGGAAAGTAAGGACGGACAAGTGTTACCCTGCTGGGTTTATGGATGTTGTGT CCATAGCAAAAACCGGAGAGAACTTCCGGTTGCTTTATGATAGCAAAGGAAGATTCACCT TGCACTCCATAAGCCTTGAAGAGGCTAAGTACAAGCTATGCAAGGTCCGAGCTGCCTGCT GCGGCGAGAAGGGGATTCCCTACATCACTACATTTGATGGGCGCACCATTCGCTATCCAG ATCCCCTTATCAAGGCCAATGACACCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46300 |
Definition |
sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum |
Align length |
159 |
Score (bit) |
276.0 |
E-value |
3.0e-74 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955467|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_C19, 5' (507 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosu... 276 3e-74 sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis t... 276 4e-74 sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis t... 276 4e-74 sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis t... 276 4e-74 sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsut... 275 9e-74 sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa sub... 272 6e-73 sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4... 272 7e-73 sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca... 249 7e-66 sp|Q5UAP0|RS4_BOMMO 40S ribosomal protein S4 OS=Bombyx mori GN=R... 247 2e-65 sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4 OS=Ictalurus puncta... 246 6e-65 sp|Q4GXU6|RS4_CARGR 40S ribosomal protein S4 OS=Carabus granulat... 246 6e-65 sp|Q9USW5|RS4B_SCHPO 40S ribosomal protein S4-B OS=Schizosacchar... 246 6e-65 sp|P87158|RS4A_SCHPO 40S ribosomal protein S4-A OS=Schizosacchar... 246 6e-65 sp|Q4PMB3|RS4_IXOSC 40S ribosomal protein S4 OS=Ixodes scapulari... 245 7e-65 sp|Q9P4W9|RS4C_SCHPO 40S ribosomal protein S4-C OS=Schizosacchar... 245 7e-65 sp|Q95V34|RS4_SPOFR 40S ribosomal protein S4 OS=Spodoptera frugi... 245 1e-64 sp|P47961|RS4_CRIGR 40S ribosomal protein S4 OS=Cricetulus grise... 244 1e-64 sp|Q642H9|RS4X_DANRE 40S ribosomal protein S4, X isoform OS=Dani... 244 1e-64 sp|P79103|RS4_BOVIN 40S ribosomal protein S4 OS=Bos taurus GN=RP... 244 2e-64 sp|P62703|RS4X_RAT 40S ribosomal protein S4, X isoform OS=Rattus... 244 2e-64 sp|P62702|RS4X_MOUSE 40S ribosomal protein S4, X isoform OS=Mus ... 244 2e-64 sp|P62704|RS4X_MESAU 40S ribosomal protein S4, X isoform OS=Meso... 244 2e-64 sp|Q76MY1|RS4X_MACFU 40S ribosomal protein S4, X isoform OS=Maca... 244 2e-64 sp|P62701|RS4X_HUMAN 40S ribosomal protein S4, X isoform OS=Homo... 244 2e-64 sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform OS=Feli... 244 2e-64 sp|Q76N24|RS4X_CERAE 40S ribosomal protein S4, X isoform OS=Cerc... 244 2e-64 sp|Q6PBC4|RS4_XENTR 40S ribosomal protein S4 OS=Xenopus tropical... 243 3e-64 sp|P49401|RS4_XENLA 40S ribosomal protein S4 OS=Xenopus laevis G... 243 4e-64 sp|P47836|RS4_CHICK 40S ribosomal protein S4 OS=Gallus gallus GN... 243 4e-64 sp|Q6GVM7|RS4Y2_PANTR 40S ribosomal protein S4, Y isoform 2 OS=P... 243 5e-64
>sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1 Length = 264
Score = 276 bits (707), Expect = 3e-74 Identities = 128/159 (80%), Positives = 147/159 (92%) Frame = +3
Query: 30 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 209 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+V+++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60
Query: 210 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 389 V++I+MQR + VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGRF LHS+ EE+K Sbjct: 61 VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120
Query: 390 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 506 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDT Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDT 159
>sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2 Length = 262
Score = 276 bits (706), Expect = 4e-74 Identities = 130/159 (81%), Positives = 146/159 (91%) Frame = +3
Query: 30 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 209 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+V+++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 210 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 389 V++I+MQR I VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGRF LHSI EEAK Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 390 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 506 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDT Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDT 159
>sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4 Length = 262
Score = 276 bits (706), Expect = 4e-74 Identities = 130/159 (81%), Positives = 146/159 (91%) Frame = +3
Query: 30 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 209 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+V+++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 210 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 389 V++I+MQR I VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGRF LHSI EEAK Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 390 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 506 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDT Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDT 159
>sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1 Length = 261
Score = 276 bits (706), Expect = 4e-74 Identities = 130/159 (81%), Positives = 146/159 (91%) Frame = +3
Query: 30 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 209 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+V+++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 210 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 389 V++I+MQR I VDGKVRTDK YPAGFMDVVSI KT ENFRLLYD+KGRF LHSI EEAK Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 390 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 506 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDT Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDT 159
>sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1 Length = 262
Score = 275 bits (703), Expect = 9e-74 Identities = 128/159 (80%), Positives = 147/159 (92%) Frame = +3
Query: 30 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 209 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPS+GPHK+RECLP++++LRNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
Query: 210 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 389 V+AI+MQR + VDGKVRTDK YPAGFMDVVSI KT E+FRLLYD+KGRF LH+I+ +E K Sbjct: 61 VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETK 120
Query: 390 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 506 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDT Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDT 159
>sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3 Length = 265
Score = 272 bits (696), Expect = 6e-73 Identities = 124/159 (77%), Positives = 147/159 (92%) Frame = +3
Query: 30 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 209 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+++++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 210 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 389 V++I+MQR + VDGKVRTDK YPAGFMDV+SI KTGEN+RLLYD+KGRF L S+ E+AK Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 390 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 506 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDP+IKANDT Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDT 159
>sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1 Length = 265
Score = 272 bits (695), Expect = 7e-73 Identities = 125/159 (78%), Positives = 146/159 (91%) Frame = +3
Query: 30 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 209 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP+++++RNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 210 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 389 V++I+MQR + VDGKVRTDK YPAGFMDV+SI KT EN+RLLYD+KGRF LH I E+AK Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAK 120
Query: 390 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 506 +KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDT Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDT 159
>sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1 Length = 261
Score = 249 bits (635), Expect = 7e-66 Identities = 121/159 (76%), Positives = 138/159 (86%) Frame = +3
Query: 30 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 209 MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPS+GPHK+RECLP++++LRNRLKYALTYRE Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
Query: 210 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 389 VV+I+MQR I VDGK+ + DVVSI KT ENFRLLYD+KGRF LHSI EE+K Sbjct: 61 VVSILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 116
Query: 390 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 506 +KLCKVR+ G+KGIPYI T+DGRTIRYPDPLIKANDT Sbjct: 117 FKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT 155
>sp|Q5UAP0|RS4_BOMMO 40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1 Length = 263
Score = 247 bits (631), Expect = 2e-65 Identities = 118/159 (74%), Positives = 131/159 (82%) Frame = +3
Query: 30 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 209 MARG KKHLKRLNAP+ WMLDKLGG +AP+PS GPHK RECLP+V+ LRNRLKYALT E Sbjct: 1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 60
Query: 210 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 389 V+ IV QRLI VDGKVRTD YPAGFMDVVSI KT E FRL+YD KGRFT+H I+ EEAK Sbjct: 61 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 120
Query: 390 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 506 YKLCKV+ G K +PY+ T DGRTIRYPDPLIK ND+ Sbjct: 121 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 159
>sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3 Length = 263
Score = 246 bits (627), Expect = 6e-65 Identities = 117/159 (73%), Positives = 131/159 (82%) Frame = +3
Query: 30 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSAGPHKTRECLPMVVLLRNRLKYALTYRE 209 MARG KKHLKR+ AP+HWMLDKL G FAP+PS GPHK RECLP+++ LRNRLKYALT E Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 210 VVAIVMQRLISVDGKVRTDKCYPAGFMDVVSIAKTGENFRLLYDSKGRFTLHSISLEEAK 389 V I MQR I VDGKVRTD YPAGFMDV+SI KTGENFRL+YD KGRFT+H I+ EEAK Sbjct: 61 VKKICMQRFIKVDGKVRTDITYPAGFMDVISIEKTGENFRLIYDVKGRFTVHRITNEEAK 120
Query: 390 YKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDT 506 YKLCKV+ G KGIP++ T D RTIRYPDP+IKANDT Sbjct: 121 YKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDT 159
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S0Q0 |
Definition |
tr|A9S0Q0|A9S0Q0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
159 |
Score (bit) |
302.0 |
E-value |
5.0e-81 |
Report |
|