DK955470 |
Clone id |
TST39A01NGRL0023_C22 |
Library |
TST39 |
Length |
491 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_C22. 5' end sequence. |
Accession |
DK955470 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
TTCTTCAATGTAGGATGCTCTGGAGGATTTTGATGGTGCGAGCAAAGGAAAATATACAAT TGGGCTGGGTCAAGATCGGTTGGCTTTTTGCTCAGATCTTGAAGATGTCATATCAATGAG CTTGACCGTCGTTCAATCTCTTCTTCATAAGTACAATGTCAAGCCCAGTCAAATTGGACG GCTTGAAGTTGGAAGTGAGACTGTGGTAGACAAGAGCAAATCTATAAAGACTTGGATTAT GCAACTCTTTGAGAAATCAGGGAATACCGACATTGAAGGTGTAGATTCAACAAATGCTTG CTATGGTGGGACTGCTGCCTTGCTGAATTGCATGAATTGGGTTGAAAGCACTGCTTGGGA TGGCCGGTTCGGACTTGTTGTCGCAGCCGATAGTGCTGTGTATGCTGAAGGAGCTGCCCG TCCAACAGGGGGAGCTGGAGCTGTGGCGATGCTTATTGGGGCTAATGCGCCGCTAGGCAT GGAGCGGAAGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P54873 |
Definition |
sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana |
Align length |
158 |
Score (bit) |
253.0 |
E-value |
3.0e-67 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955470|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_C22, 5' (476 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase OS=Arabi... 253 3e-67 sp|P23228|HMCS1_CHICK Hydroxymethylglutaryl-CoA synthase, cytopl... 225 9e-59 sp|Q5R7Z9|HMCS1_PONAB Hydroxymethylglutaryl-CoA synthase, cytopl... 221 2e-57 sp|Q01581|HMCS1_HUMAN Hydroxymethylglutaryl-CoA synthase, cytopl... 220 2e-57 sp|Q8JZK9|HMCS1_MOUSE Hydroxymethylglutaryl-CoA synthase, cytopl... 219 6e-57 sp|P13704|HMCS1_CRIGR Hydroxymethylglutaryl-CoA synthase, cytopl... 217 2e-56 sp|P17425|HMCS1_RAT Hydroxymethylglutaryl-CoA synthase, cytoplas... 216 4e-56 sp|P54961|HMCS1_BLAGE Hydroxymethylglutaryl-CoA synthase 1 OS=Bl... 212 6e-55 sp|P54872|HMCSA_DICDI Hydroxymethylglutaryl-CoA synthase A OS=Di... 211 1e-54 sp|P54868|HMCS2_HUMAN Hydroxymethylglutaryl-CoA synthase, mitoch... 206 3e-53 sp|O02734|HMCS2_PIG Hydroxymethylglutaryl-CoA synthase, mitochon... 204 1e-52 sp|P54869|HMCS2_MOUSE Hydroxymethylglutaryl-CoA synthase, mitoch... 204 2e-52 sp|Q2KIE6|HMCS2_BOVIN Hydroxymethylglutaryl-CoA synthase, mitoch... 204 2e-52 sp|P22791|HMCS2_RAT Hydroxymethylglutaryl-CoA synthase, mitochon... 202 8e-52 sp|P54839|HMCS_YEAST Hydroxymethylglutaryl-CoA synthase OS=Sacch... 199 4e-51 sp|Q86HL5|HMCSB_DICDI Hydroxymethylglutaryl-CoA synthase B OS=Di... 195 8e-50 sp|P54870|HMCS2_BLAGE Hydroxymethylglutaryl-CoA synthase 2 OS=Bl... 195 1e-49 sp|P54874|HMCS_SCHPO Hydroxymethylglutaryl-CoA synthase OS=Schiz... 188 9e-48 sp|P54871|HMCS_CAEEL Hydroxymethylglutaryl-CoA synthase OS=Caeno... 162 9e-40 sp|O26883|Y792_METTH UPF0219 protein MTH_792 OS=Methanobacterium... 56 7e-08 sp|Q58941|Y1546_METJA UPF0219 protein MJ1546 OS=Methanocaldococc... 55 2e-07 sp|P40830|PKSG_BACSU Putative polyketide biosynthesis protein pk... 52 1e-06 sp|Q8PYJ0|Y871_METMA UPF0219 protein MM_0871 OS=Methanosarcina m... 50 4e-06 sp|Q6L233|Y384_PICTO UPF0219 protein PTO0384 OS=Picrophilus torr... 50 4e-06 sp|Q46F10|Y551_METBF UPF0219 protein Mbar_A0551 OS=Methanosarcin... 50 7e-06 sp|A0B8Z1|Y1390_METTP UPF0219 protein Mthe_1390 OS=Methanosaeta ... 50 7e-06 sp|A6VGF1|Y458_METM7 UPF0219 protein MmarC7_0458 OS=Methanococcu... 49 1e-05 sp|A4FWW6|Y379_METM5 UPF0219 protein MmarC5_0379 OS=Methanococcu... 49 1e-05 sp|Q8TIV0|Y4041_METAC UPF0219 protein MA_4041 OS=Methanosarcina ... 49 2e-05 sp|Q6LXY3|Y1211_METMP UPF0219 protein MMP1211 OS=Methanococcus m... 47 3e-05
>sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2 Length = 461
Score = 253 bits (646), Expect = 3e-67 Identities = 122/158 (77%), Positives = 137/158 (86%) Frame = +2
Query: 2 ALEDFDGASKGKYTIGLGQDRLAFCSDLEDVISMSLTVVQSLLHKYNVKPSQIGRLEVGS 181 ALE DGASKGKYTIGLGQD LAFC++LEDVISMS V SL KY + P+QIGRLEVGS Sbjct: 23 ALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLFEKYKIDPNQIGRLEVGS 82
Query: 182 ETVVDKSKSIKTWIMQLFEKSGNTDIEGVDSTNACYGGTAALLNCMNWVESTAWDGRFGL 361 ETV+DKSKSIKT++MQLFEK GNTD+EGVDSTNACYGGTAALLNC+NWVES +WDGR+GL Sbjct: 83 ETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGL 142
Query: 362 VVAADSAVYAEGAARPTGGAGAVAMLIGANAPLGMERK 475 V+ DSAVYAEG ARPTGGA A+AMLIG +AP+ E K Sbjct: 143 VICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESK 180
>sp|P23228|HMCS1_CHICK Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Gallus gallus GN=HMGCS1 PE=1 SV=1 Length = 522
Score = 225 bits (573), Expect = 9e-59 Identities = 105/156 (67%), Positives = 130/156 (83%) Frame = +2
Query: 5 LEDFDGASKGKYTIGLGQDRLAFCSDLEDVISMSLTVVQSLLHKYNVKPSQIGRLEVGSE 184 LE +DG GKYTIGLGQ ++ FCSD ED+ S+ LTVVQ L+ + ++ IGRLEVG+E Sbjct: 36 LEKYDGVDAGKYTIGLGQSKMGFCSDREDINSLCLTVVQKLMERNSLSYDCIGRLEVGTE 95
Query: 185 TVVDKSKSIKTWIMQLFEKSGNTDIEGVDSTNACYGGTAALLNCMNWVESTAWDGRFGLV 364 T++DKSKS+KT +MQLFE+SGNTD+EG+D+TNACYGGTAAL N +NW+ES++WDGR+ LV Sbjct: 96 TIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALV 155
Query: 365 VAADSAVYAEGAARPTGGAGAVAMLIGANAPLGMER 472 VA D AVYA G ARPTGGAGAVAML+G+NAPL ER Sbjct: 156 VAGDIAVYATGNARPTGGAGAVAMLVGSNAPLIFER 191
>sp|Q5R7Z9|HMCS1_PONAB Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1 Length = 520
Score = 221 bits (562), Expect = 2e-57 Identities = 103/156 (66%), Positives = 130/156 (83%) Frame = +2
Query: 5 LEDFDGASKGKYTIGLGQDRLAFCSDLEDVISMSLTVVQSLLHKYNVKPSQIGRLEVGSE 184 LE +DG + GKYTIGLGQ ++ FC+D ED+ S+ +TVVQ+L+ + N+ IGRLEVG+E Sbjct: 36 LEKYDGVAAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTE 95
Query: 185 TVVDKSKSIKTWIMQLFEKSGNTDIEGVDSTNACYGGTAALLNCMNWVESTAWDGRFGLV 364 T++DKSKS+KT +MQLFE+SGNTDIEG+D+TNACYGGTAA+ N +NW+ES++WDGR+ LV Sbjct: 96 TIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALV 155
Query: 365 VAADSAVYAEGAARPTGGAGAVAMLIGANAPLGMER 472 VA D AVYA G ARPTGG GAVA+LIG NAPL ER Sbjct: 156 VAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFER 191
>sp|Q01581|HMCS1_HUMAN Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2 Length = 520
Score = 220 bits (561), Expect = 2e-57 Identities = 103/156 (66%), Positives = 129/156 (82%) Frame = +2
Query: 5 LEDFDGASKGKYTIGLGQDRLAFCSDLEDVISMSLTVVQSLLHKYNVKPSQIGRLEVGSE 184 LE +DG GKYTIGLGQ ++ FC+D ED+ S+ +TVVQ+L+ + N+ IGRLEVG+E Sbjct: 36 LEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTE 95
Query: 185 TVVDKSKSIKTWIMQLFEKSGNTDIEGVDSTNACYGGTAALLNCMNWVESTAWDGRFGLV 364 T++DKSKS+KT +MQLFE+SGNTDIEG+D+TNACYGGTAA+ N +NW+ES++WDGR+ LV Sbjct: 96 TIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALV 155
Query: 365 VAADSAVYAEGAARPTGGAGAVAMLIGANAPLGMER 472 VA D AVYA G ARPTGG GAVA+LIG NAPL ER Sbjct: 156 VAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFER 191
>sp|Q8JZK9|HMCS1_MOUSE Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Mus musculus GN=Hmgcs1 PE=2 SV=1 Length = 520
Score = 219 bits (557), Expect = 6e-57 Identities = 102/156 (65%), Positives = 129/156 (82%) Frame = +2
Query: 5 LEDFDGASKGKYTIGLGQDRLAFCSDLEDVISMSLTVVQSLLHKYNVKPSQIGRLEVGSE 184 LE +DG GKYTIGLGQ R+ FC+D ED+ S+ LTVVQ L+ ++++ IGRLEVG+E Sbjct: 36 LEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQKLMERHSLSYDCIGRLEVGTE 95
Query: 185 TVVDKSKSIKTWIMQLFEKSGNTDIEGVDSTNACYGGTAALLNCMNWVESTAWDGRFGLV 364 T++DKSKS+K+ +MQLFE+SGNTDIEG+D+TNACYGGTAA+ N +NWVES++WDGR+ LV Sbjct: 96 TIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWVESSSWDGRYALV 155
Query: 365 VAADSAVYAEGAARPTGGAGAVAMLIGANAPLGMER 472 VA D A+YA G ARPTGG GAVA+LIG NAPL +R Sbjct: 156 VAGDIAIYATGNARPTGGVGAVALLIGPNAPLIFDR 191
>sp|P13704|HMCS1_CRIGR Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Cricetulus griseus GN=HMGCS1 PE=3 SV=1 Length = 520
Score = 217 bits (553), Expect = 2e-56 Identities = 101/156 (64%), Positives = 129/156 (82%) Frame = +2
Query: 5 LEDFDGASKGKYTIGLGQDRLAFCSDLEDVISMSLTVVQSLLHKYNVKPSQIGRLEVGSE 184 LE +DG GKYTIGLGQ R+ FC+D ED+ S+ LTVVQ+L+ + ++ IGRLEVG+E Sbjct: 36 LEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQNLMERNSLSYDCIGRLEVGTE 95
Query: 185 TVVDKSKSIKTWIMQLFEKSGNTDIEGVDSTNACYGGTAALLNCMNWVESTAWDGRFGLV 364 T++DKSKS+K+ +MQLFE+SGNTDIEG+D+TNACYGGTAA+ N +NW+ES++WDGR+ LV Sbjct: 96 TIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALV 155
Query: 365 VAADSAVYAEGAARPTGGAGAVAMLIGANAPLGMER 472 VA D A+YA G ARPTGG GAVA+LIG NAPL +R Sbjct: 156 VAGDIAIYATGNARPTGGVGAVALLIGPNAPLIFDR 191
>sp|P17425|HMCS1_RAT Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Rattus norvegicus GN=Hmgcs1 PE=1 SV=1 Length = 520
Score = 216 bits (550), Expect = 4e-56 Identities = 100/156 (64%), Positives = 128/156 (82%) Frame = +2
Query: 5 LEDFDGASKGKYTIGLGQDRLAFCSDLEDVISMSLTVVQSLLHKYNVKPSQIGRLEVGSE 184 LE +DG GKYTIGLGQ R+ FC+D ED+ S+ LTVVQ L+ + ++ IGRLEVG+E Sbjct: 36 LEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQKLMERNSLSYDCIGRLEVGTE 95
Query: 185 TVVDKSKSIKTWIMQLFEKSGNTDIEGVDSTNACYGGTAALLNCMNWVESTAWDGRFGLV 364 T++DKSKS+K+ +MQLFE+SGNTDIEG+D+TNACYGGTAA+ N +NW+ES++WDGR+ LV Sbjct: 96 TIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALV 155
Query: 365 VAADSAVYAEGAARPTGGAGAVAMLIGANAPLGMER 472 VA D A+YA G ARPTGG GAVA+LIG NAP+ +R Sbjct: 156 VAGDIAIYASGNARPTGGVGAVALLIGPNAPVIFDR 191
>sp|P54961|HMCS1_BLAGE Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1 Length = 453
Score = 212 bits (540), Expect = 6e-55 Identities = 102/156 (65%), Positives = 130/156 (83%) Frame = +2
Query: 5 LEDFDGASKGKYTIGLGQDRLAFCSDLEDVISMSLTVVQSLLHKYNVKPSQIGRLEVGSE 184 LE +D S GKYT+GLGQ R+ FC+D ED+ S+ LTVV L+ ++++ SQIGRLEVG+E Sbjct: 25 LEVYDNVSAGKYTVGLGQARMGFCTDREDINSLCLTVVSRLMERWSIPYSQIGRLEVGTE 84
Query: 185 TVVDKSKSIKTWIMQLFEKSGNTDIEGVDSTNACYGGTAALLNCMNWVESTAWDGRFGLV 364 T++DKSKS+KT +MQLF+ NTDIEGVD+ NACYGGT+AL N ++WVES++WDGR+ LV Sbjct: 85 TLLDKSKSVKTVLMQLFKD--NTDIEGVDTVNACYGGTSALFNAISWVESSSWDGRYALV 142
Query: 365 VAADSAVYAEGAARPTGGAGAVAMLIGANAPLGMER 472 VA D AVYA+G+ARPTGGAGAVAML+GANAPL +R Sbjct: 143 VAGDIAVYAKGSARPTGGAGAVAMLVGANAPLVFDR 178
>sp|P54872|HMCSA_DICDI Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=2 SV=2 Length = 482
Score = 211 bits (538), Expect = 1e-54 Identities = 99/155 (63%), Positives = 122/155 (78%) Frame = +2
Query: 5 LEDFDGASKGKYTIGLGQDRLAFCSDLEDVISMSLTVVQSLLHKYNVKPSQIGRLEVGSE 184 LE FDG S+GKYT+GLGQ +AFC D ED+ S+SL V +L+ K+NV P+ IGRLEVG+E Sbjct: 26 LEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSLNAVNNLMDKFNVDPNSIGRLEVGTE 85
Query: 185 TVVDKSKSIKTWIMQLFEKSGNTDIEGVDSTNACYGGTAALLNCMNWVESTAWDGRFGLV 364 TV+DKSKS+KT +M LF K GNT I+G+D+ NACYGGT+AL N + W+ES+ WDGR +V Sbjct: 86 TVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGTSALHNALQWMESSYWDGRNAIV 145
Query: 365 VAADSAVYAEGAARPTGGAGAVAMLIGANAPLGME 469 VA D AVY +G ARPTGGAG VAMLIG NAP+ E Sbjct: 146 VAGDIAVYEKGPARPTGGAGVVAMLIGPNAPITFE 180
>sp|P54868|HMCS2_HUMAN Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1 Length = 508
Score = 206 bits (525), Expect = 3e-53 Identities = 95/156 (60%), Positives = 122/156 (78%) Frame = +2
Query: 5 LEDFDGASKGKYTIGLGQDRLAFCSDLEDVISMSLTVVQSLLHKYNVKPSQIGRLEVGSE 184 LE ++ GKYT+GLGQ R+ FCS ED+ S+ LTVVQ L+ + + +GRLEVG+E Sbjct: 73 LEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEVGTE 132
Query: 185 TVVDKSKSIKTWIMQLFEKSGNTDIEGVDSTNACYGGTAALLNCMNWVESTAWDGRFGLV 364 T++DKSK++KT +M+LF+ SGNTDIEG+D+TNACYGGTA+L N NW+ES++WDGR+ +V Sbjct: 133 TIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMV 192
Query: 365 VAADSAVYAEGAARPTGGAGAVAMLIGANAPLGMER 472 V D AVY G ARPTGGAGAVAMLIG APL +ER Sbjct: 193 VCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALER 228
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6ZBH5 |
Definition |
tr|Q6ZBH5|Q6ZBH5_ORYSJ Os08g0544900 protein OS=Oryza sativa subsp. japonica |
Align length |
158 |
Score (bit) |
263.0 |
E-value |
4.0e-69 |
Report |
|