DK955479 [AcEST]

DK955479
Clone id	TST39A01NGRL0023_D08
Library	TST39
Length	648
Definition	Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_D08. 5' end sequence.
Accession	DK955479
Tissue type	prothallia with plantlets
Developmental stage	gametophytes with sporophytes
Contig ID	-
Sequence	GTAAACATTTCTCTAGCTATCGAATAAGCCAGAACAACAGCCAATGGGAAATACAGAATC TTAGGCCTGAACAAGTCTATTAGCAAAAAGAACTTATTTAAAATGGAAGCATATACAATA TATTTAGATAATAGATTTGTTGCATCCATCTCTTGAGATAATCAAATGCATTTTATAAAA CTCTTTTAGATCTTGGACATGCACCATAGTAGCCATAGAGTTTTTAATGGGGATTCAAAG CTTTCAGGAGGTTTTGGTCCATGTATAAAACGCCATCCGGGATGTTTCACATATAACTTC AAAATCAATGATGTCATACATACATAGACATTAAGCATCATGTACATTGCACACCATGTC AAAGTAAGACATGAATTAAATTTTATAATGCTTTGCAAGTCTTATGCCTTTGTCGAAGCT TGACACTTAAAATAGAACATATAAGAACCACACGTAAAAACGTTTCAGTGTTTATGCTGT CCCTTTCTCTATGTTTTTCTCCATTGTTAAGAATTAAAGGGATAGACATGACATTAAGAG CAATAGGTTAGCCATGTTACTTCTCATGTGACTAGTCATGGTTGCAATTATTAAGCCTAG CAGTGCCAATCTTTGACGCGAGCCTACTAAAACATTCACCGTGATTCT
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q3ZJ90
Definition	sp\|Q3ZJ90\|RPOC2_PSEAK DNA-directed RNA polymerase subunit beta'' OS=Pseudendoclonium akinetum
Align length	84
Score (bit)	31.2
E-value	4.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK955479\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_D08, 5' (648 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q3ZJ90\|RPOC2_PSEAK DNA-directed RNA polymerase subunit beta''... 31 4.9 sp\|P11655\|SEC12_YEAST Guanine nucleotide-exchange factor SEC12 O... 31 6.4 >sp\|Q3ZJ90\|RPOC2_PSEAK DNA-directed RNA polymerase subunit beta'' OS=Pseudendoclonium akinetum GN=rpoC2 PE=3 SV=1 Length = 3462 Score = 31.2 bits (69), Expect = 4.9 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%) Frame = +1 Query: 31 RTTANGKYRILGLN---KSISKKNLFKMEAYTIYLDNRFVASISDNQMHFIKLFILDM 201 ++T GK+R L LN I+KK FKM +++ + ++ +K F D+ Sbjct: 735 QSTIVGKHRFLSLNIIFTQIAKKKFFKM-------------NLNSEVKIKSLKQF---DL 778 Query: 202 HHSSHR-----VFNGDSKLSGGFG 258 +H S+ VFN D +GGFG Sbjct: 779 NHESNEMKQIGVFNKDKTPTGGFG 802 >sp\|P11655\|SEC12_YEAST Guanine nucleotide-exchange factor SEC12 OS=Saccharomyces cerevisiae GN=SEC12 PE=1 SV=1 Length = 471 Score = 30.8 bits (68), Expect = 6.4 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +1 Query: 49 KYRILGLNKSISKKNLFKMEAYTIYLDNRFVASIS*DNQMHFIKL 183 K + L ++K + + F + TI D+ +VAS+S N +H IKL Sbjct: 294 KLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 338
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK955479\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_D08, 5' (648 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****