DK955482 |
Clone id |
TST39A01NGRL0023_D11 |
Library |
TST39 |
Length |
600 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_D11. 5' end sequence. |
Accession |
DK955482 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CACACACACACACACACACACACACACACACCCTTCTTCCAGTCTGCCTCTTCATCTCCC CGGCCCTCGCCTCTCTGTTGCTTGCTTGTGCCTGGAAATGAACATCGTCCATAGCCGCAG ATTGGCCCTGCTTGCTGTTGACACACCCTCCCCTTCCCTCTCCCCCCTCCTCTCTCCACC CTCCTCCCCCACCACCCCTAACCTCAGAATCAACTACGCCTCTTCGCACGACTCCTCTGC TTACCCTTCTTCCTCCACCTTCCATGGCCCCTACATGGGCATCGTCCTTGTTGTCCTCCT CGTCACCTTCTTTCTCATGGCCGCCTTCTCTGTCTATGTCCGCCGCTATGCCTTCTCGGC CGGTGGCGACATTGGTGGCATCAGTATGGATCGCTCAGGGCGTCCTCGCGGCTTGGATCG CTCGGCCATTGACGGTTTACCCATCGTAGTTTTCCACTGCACAAAAGGAGAATCCAAAGA AGCGGATTCGTCAGTACATGCGCATGAGTGGCGGCGCAGGCCCGATTGCGTGGTGTGCCT TACGGATTTCCAAGAGGCGGAGAATGTGAGGTTGCTGCCAAAGTGTGAGCACTGTTTTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SJJ7 |
Definition |
sp|Q9SJJ7|ATL2E_ARATH RING-H2 finger protein ATL2E OS=Arabidopsis thaliana |
Align length |
103 |
Score (bit) |
57.8 |
E-value |
4.0e-08 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T8Z4 |
Definition |
tr|A9T8Z4|A9T8Z4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
96 |
Score (bit) |
57.0 |
E-value |
8.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955482|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_D11, 5' (600 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T8Z4|A9T8Z4_PHYPA Predicted protein (Fragment) OS=Physcomit... 57 8e-07 tr|Q6K5E4|Q6K5E4_ORYSJ RING-H2 zinc finger protein ATL6-like OS=... 56 2e-06 tr|A9SJR3|A9SJR3_PHYPA Predicted protein (Fragment) OS=Physcomit... 56 2e-06 tr|A3BZR6|A3BZR6_ORYSJ Putative uncharacterized protein OS=Oryza... 56 2e-06 tr|A2Z274|A2Z274_ORYSI Putative uncharacterized protein OS=Oryza... 56 2e-06 tr|B8LN45|B8LN45_PICSI Putative uncharacterized protein OS=Picea... 55 2e-06 tr|B8LL09|B8LL09_PICSI Putative uncharacterized protein OS=Picea... 55 2e-06 tr|A9RPJ9|A9RPJ9_PHYPA Predicted protein OS=Physcomitrella paten... 54 5e-06 tr|A7PQN4|A7PQN4_VITVI Chromosome chr6 scaffold_25, whole genome... 54 7e-06 tr|Q84KA9|Q84KA9_CUCME RING/C3HC4/PHD zinc finger-like protein O... 54 9e-06 tr|Q2HTN3|Q2HTN3_MEDTR Zinc finger, RING-type OS=Medicago trunca... 54 9e-06 tr|A2WM12|A2WM12_ORYSI Putative uncharacterized protein OS=Oryza... 54 9e-06 tr|Q94IZ7|Q94IZ7_ORYSJ cDNA clone:J013134A03, full insert sequen... 53 1e-05 tr|Q6YTT7|Q6YTT7_ORYSJ Os08g0484200 protein OS=Oryza sativa subs... 53 2e-05 tr|A3BU82|A3BU82_ORYSJ Putative uncharacterized protein OS=Oryza... 53 2e-05 tr|A2YWD6|A2YWD6_ORYSI Putative uncharacterized protein OS=Oryza... 53 2e-05 tr|B4FZV3|B4FZV3_MAIZE Putative uncharacterized protein OS=Zea m... 52 2e-05 tr|A7PSE2|A7PSE2_VITVI Chromosome chr14 scaffold_27, whole genom... 52 2e-05 tr|A5BY68|A5BY68_VITVI Putative uncharacterized protein OS=Vitis... 52 2e-05 tr|A9TK85|A9TK85_PHYPA Predicted protein (Fragment) OS=Physcomit... 51 4e-05 tr|B4FCV0|B4FCV0_MAIZE Putative uncharacterized protein OS=Zea m... 51 6e-05 tr|A7NUS9|A7NUS9_VITVI Chromosome chr18 scaffold_1, whole genome... 51 6e-05 tr|Q4TU11|Q4TU11_ARATH RING finger family protein OS=Arabidopsis... 50 8e-05 tr|A7NX81|A7NX81_VITVI Chromosome chr5 scaffold_2, whole genome ... 50 8e-05 tr|A5AQI4|A5AQI4_VITVI Putative uncharacterized protein OS=Vitis... 50 8e-05 tr|B8AF42|B8AF42_ORYSI Putative uncharacterized protein OS=Oryza... 50 1e-04 tr|B6SI61|B6SI61_MAIZE RING-H2 finger protein ATL2A OS=Zea mays ... 50 1e-04 tr|A7R0H9|A7R0H9_VITVI Chromosome undetermined scaffold_309, who... 50 1e-04 tr|Q7XP61|Q7XP61_ORYSJ OSJNBa0013K16.6 protein OS=Oryza sativa s... 50 1e-04 tr|Q6K716|Q6K716_ORYSJ Os02g0820200 protein OS=Oryza sativa subs... 50 1e-04
>tr|A9T8Z4|A9T8Z4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_48685 PE=4 SV=1 Length = 127
Score = 57.0 bits (136), Expect = 8e-07 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%) Frame = +2
Query: 320 AAFSVYVRRYAFSAG---GDIGGISMDRSGRPRGLDRSAIDGLPIVVFHCTKGESKEADS 490 A + +VRRY +G S + S +PRGL + +D LP++ HC + K+ Sbjct: 24 AIIATFVRRYCAGSGYPPASSTAQSTNVSSKPRGLRKEVVDALPLI--HCKDLDEKDDR- 80
Query: 491 SVHAHEWRRRPDCVVCLTDFQEAENVRLLPKCEHCF 598 +C VCLT+F+ +N+RLLP C+H F Sbjct: 81 -----------ECPVCLTEFEPEDNLRLLPACKHIF 105
>tr|Q6K5E4|Q6K5E4_ORYSJ RING-H2 zinc finger protein ATL6-like OS=Oryza sativa subsp. japonica GN=P0676H02.10 PE=4 SV=1 Length = 392
Score = 55.8 bits (133), Expect = 2e-06 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Frame = +2
Query: 257 TFHGPYMGIXXXXXXXXXXXMAAFSVYVRRYAFSAGGDIGGISMDRSG-----RPRGLDR 421 T P M I + FS+YVR + + GD + RSG R RGLD+ Sbjct: 41 TNFSPSMAIVIVVLIAAFFFLGFFSIYVR-HCYGGRGDYSTTPLPRSGAARSRRQRGLDQ 99
Query: 422 SAIDGLPIVVFHCTKGESKEADSSVHAHEWRRRP-DCVVCLTDFQEAENVRLLPKCEHCF 598 S + P + + + V AH+ + +C VC+++F + E +RLLPKC H F Sbjct: 100 SVLATFPTMAY-----------ADVKAHKSVKGALECAVCISEFDDDETLRLLPKCSHVF 148
>tr|A9SJR3|A9SJR3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_18593 PE=4 SV=1 Length = 122
Score = 55.8 bits (133), Expect = 2e-06 Identities = 30/72 (41%), Positives = 40/72 (55%) Frame = +2
Query: 383 SMDRSGRPRGLDRSAIDGLPIVVFHCTKGESKEADSSVHAHEWRRRPDCVVCLTDFQEAE 562 S D + R +GLD+S I+ LP+V + DS + + DCVVCL+ F E E Sbjct: 39 SDDHNEREKGLDKSVIEALPVVAY--------SPDSIKSSFDPSGENDCVVCLSGFVEGE 90
Query: 563 NVRLLPKCEHCF 598 VRLLP C+H F Sbjct: 91 KVRLLPHCKHGF 102
>tr|A3BZR6|A3BZR6_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_028538 PE=4 SV=1 Length = 441
Score = 55.8 bits (133), Expect = 2e-06 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Frame = +2
Query: 257 TFHGPYMGIXXXXXXXXXXXMAAFSVYVRRYAFSAGGDIGGISMDRSG-----RPRGLDR 421 T P M I + FS+YVR + + GD + RSG R RGLD+ Sbjct: 41 TNFSPSMAIVIVVLIAAFFFLGFFSIYVR-HCYGGRGDYSTTPLPRSGAARSRRQRGLDQ 99
Query: 422 SAIDGLPIVVFHCTKGESKEADSSVHAHEWRRRP-DCVVCLTDFQEAENVRLLPKCEHCF 598 S + P + + + V AH+ + +C VC+++F + E +RLLPKC H F Sbjct: 100 SVLATFPTMAY-----------ADVKAHKSVKGALECAVCISEFDDDETLRLLPKCSHVF 148
>tr|A2Z274|A2Z274_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_31707 PE=4 SV=1 Length = 401
Score = 55.8 bits (133), Expect = 2e-06 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Frame = +2
Query: 257 TFHGPYMGIXXXXXXXXXXXMAAFSVYVRRYAFSAGGDIGGISMDRSG-----RPRGLDR 421 T P M I + FS+YVR + + GD + RSG R RGLD+ Sbjct: 41 TNFSPSMAIVIVVLIAAFFFLGFFSIYVR-HCYGGRGDYSTTPLPRSGAARSRRQRGLDQ 99
Query: 422 SAIDGLPIVVFHCTKGESKEADSSVHAHEWRRRP-DCVVCLTDFQEAENVRLLPKCEHCF 598 S + P + + + V AH+ + +C VC+++F + E +RLLPKC H F Sbjct: 100 SVLATFPTMAY-----------ADVKAHKSVKGALECAVCISEFDDDETLRLLPKCSHVF 148
>tr|B8LN45|B8LN45_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 466
Score = 55.5 bits (132), Expect = 2e-06 Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 13/123 (10%) Frame = +2
Query: 269 PYMGIXXXXXXXXXXXMAAFSVYVRRYAFSAGGDIGGISMDRSGR-------------PR 409 P M I M FS+YVRR A G+ R G Sbjct: 64 PSMAIIIVVLLSAFFFMGFFSIYVRRCA----GEDDSFRASRQGARGANAQARRQDDGTH 119
Query: 410 GLDRSAIDGLPIVVFHCTKGESKEADSSVHAHEWRRRPDCVVCLTDFQEAENVRLLPKCE 589 GLDR+ I+ P+ + KG + ++ +C VCL +F++ E +RLLPKC Sbjct: 120 GLDRAVIESFPVFSYDLVKGLKAQTKETL---------ECAVCLNEFEDDEQLRLLPKCS 170
Query: 590 HCF 598 H F Sbjct: 171 HAF 173
>tr|B8LL09|B8LL09_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 467
Score = 55.5 bits (132), Expect = 2e-06 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Frame = +2
Query: 269 PYMGIXXXXXXXXXXXMAAFSVYVRRYAFSAGGDIGGISMDRSGRP--RGLDRSAIDGLP 442 P M I MA FS+ R+ A G + R RGLDR+ I+ P Sbjct: 68 PSMAIVLVGLVGACFFMACFSICFRKCASEDESLRGANAQARRQNEGNRGLDRAVIESFP 127
Query: 443 IVVFHCTKGESKEADSSVHAHEWRRRPDCVVCLTDFQEAENVRLLPKCEHCF 598 + + KG + ++ +C VCL++F++ E +RLLPKC H F Sbjct: 128 VFSYDLVKGLKAQTKETL---------ECAVCLSEFEDDEQLRLLPKCSHAF 170
>tr|A9RPJ9|A9RPJ9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160272 PE=4 SV=1 Length = 406
Score = 54.3 bits (129), Expect = 5e-06 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 2/112 (1%) Frame = +2
Query: 269 PYMGIXXXXXXXXXXXMAAFSVYVRRYAFSAGGDIGGISMDR--SGRPRGLDRSAIDGLP 442 P M + + SV++R+ + G + R S + RGLD++A+D LP Sbjct: 29 PTMAVVIIVLIGGCFILGFISVFIRK-CMTDGNAVTPAERSRILSMKTRGLDKAAVDALP 87
Query: 443 IVVFHCTKGESKEADSSVHAHEWRRRPDCVVCLTDFQEAENVRLLPKCEHCF 598 IV F K+ D + +C VCLTDF+ +N+RLLP C+H F Sbjct: 88 IVHF-------KDLDE-------KNDRECPVCLTDFELEDNLRLLPVCKHIF 125
>tr|A7PQN4|A7PQN4_VITVI Chromosome chr6 scaffold_25, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022133001 PE=4 SV=1 Length = 308
Score = 53.9 bits (128), Expect = 7e-06 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 10/104 (9%) Frame = +2
Query: 317 MAAFSVYVRRYAFSAGGDIG---------GISMDRSGRP-RGLDRSAIDGLPIVVFHCTK 466 M FSVY+RR+A ++ S RS P +GLD S + LP+ +H Sbjct: 134 MGFFSVYIRRFAEDNAVEMSRRRRHPNPPASSSSRSPTPSKGLDASTVSSLPLFSYH--- 190
Query: 467 GESKEADSSVHAHEWRRRPDCVVCLTDFQEAENVRLLPKCEHCF 598 G++KE DC VCLT F++ + V+++P C H F Sbjct: 191 GDAKET------------LDCPVCLTQFEDKDTVKIIPYCRHVF 222
>tr|Q84KA9|Q84KA9_CUCME RING/C3HC4/PHD zinc finger-like protein OS=Cucumis melo GN=Drzf PE=4 SV=1 Length = 379
Score = 53.5 bits (127), Expect = 9e-06 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 3/97 (3%) Frame = +2
Query: 317 MAAFSVYVRRYAFSAGGDIGGISM--DRSGRP-RGLDRSAIDGLPIVVFHCTKGESKEAD 487 MA FSVY+R S + I+ RS R RGLD + I+ P +++ K E K Sbjct: 61 MAFFSVYIRHCNDSPSNTVRPITAAAGRSRRATRGLDPAVIETFPTLIYSDVK-EHKIGK 119
Query: 488 SSVHAHEWRRRPDCVVCLTDFQEAENVRLLPKCEHCF 598 S++ +C VCL +F++ E +RL+PKC+H F Sbjct: 120 SAL---------ECAVCLNEFEDDETLRLIPKCDHVF 147
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