| DK955517 |
| Clone id |
TST39A01NGRL0023_E24 |
| Library |
TST39 |
| Length |
486 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_E24. 5' end sequence. |
| Accession |
DK955517 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL295Contig1 |
| Sequence |
CGATCGAGGGCTGCATTTGGGGCAGGTGAGATTTGCTCAAGCTCAGCGGCTATGGCTTTC
GCAGGAACCCAGCAAAAGTGCAAGGCCTGCGGCAAGACCGTGTACGTGGTGGATCAGCTC
ACCGCAGATAACGTGGTGTATCATAAGGCTTGCTTTCGATGCCACCATTGCAATGGCACC
CTCAAGTTGAGTAACTACTCTTCATTTGAGGGAACATTATATTGCAAGCCCCACTTTGAT
CAATTGTTCAAAAGGACTGGAAGTCTTGACAAGAGCTTTGAGTCAGGTGTTCCAAAAACC
CCCAAATCTGTGGACAGAGGTTTTGATGGTGAATCGAAAACGCCCACAAAGTTTGCATCA
ATCTTTTCTGGGACACAGGAAAAGTGCTTGGCTTGCGGAAAGACTGTTTATCCGATCGAA
AAGGTAAAGCGTGGATGGTATGCTGTACCACAAGGCATGTTTTAAAGTGTTGCCATGGGG
GGCTGT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P29675 |
| Definition |
sp|P29675|SF3_HELAN Pollen-specific protein SF3 OS=Helianthus annuus |
| Align length |
144 |
| Score (bit) |
167.0 |
| E-value |
3.0e-41 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955517|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_E24, 5'
(486 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P29675|SF3_HELAN Pollen-specific protein SF3 OS=Helianthus an... 167 3e-41
sp|Q4U4S6|XIRP2_MOUSE Xin actin-binding repeat-containing protei... 93 7e-19
sp|Q1LZA7|LIMD2_BOVIN LIM domain-containing protein 2 OS=Bos tau... 88 2e-17
sp|Q9BT23|LIMD2_HUMAN LIM domain-containing protein 2 OS=Homo sa... 88 2e-17
sp|Q4KM31|LIMD2_RAT LIM domain-containing protein 2 OS=Rattus no... 87 3e-17
sp|Q8BGB5|LIMD2_MOUSE LIM domain-containing protein 2 OS=Mus mus... 87 3e-17
sp|Q9ERG0|LIMA1_MOUSE LIM domain and actin-binding protein 1 OS=... 87 5e-17
sp|Q9UHB6|LIMA1_HUMAN LIM domain and actin-binding protein 1 OS=... 86 1e-16
sp|O60952|LIME_DICDI LIM domain-containing protein E OS=Dictyost... 70 5e-12
sp|P50461|CSRP3_HUMAN Cysteine and glycine-rich protein 3 OS=Hom... 70 7e-12
sp|Q4U0T9|CSRP3_BOVIN Cysteine and glycine-rich protein 3 OS=Bos... 69 1e-11
sp|P50463|CSRP3_RAT Cysteine and glycine-rich protein 3 OS=Rattu... 69 1e-11
sp|P50462|CSRP3_MOUSE Cysteine and glycine-rich protein 3 OS=Mus... 68 2e-11
sp|Q16527|CSRP2_HUMAN Cysteine and glycine-rich protein 2 OS=Hom... 66 1e-10
sp|Q32LE9|CSRP2_BOVIN Cysteine and glycine-rich protein 2 OS=Bos... 66 1e-10
sp|Q0VFX8|CRIP2_BOVIN Cysteine-rich protein 2 OS=Bos taurus GN=C... 65 1e-10
sp|Q62908|CSRP2_RAT Cysteine and glycine-rich protein 2 OS=Rattu... 65 2e-10
sp|Q05158|CSRP2_COTJA Cysteine and glycine-rich protein 2 OS=Cot... 65 2e-10
sp|P50460|CSRP2_CHICK Cysteine and glycine-rich protein 2 OS=Gal... 65 2e-10
sp|P97314|CSRP2_MOUSE Cysteine and glycine-rich protein 2 OS=Mus... 64 3e-10
sp|Q9BIW5|LIMC_DICDI LIM domain-containing protein C OS=Dictyost... 63 8e-10
sp|Q8BML1|MICA2_MOUSE Protein MICAL-2 OS=Mus musculus GN=Mical2 ... 62 2e-09
sp|Q8VDP3|MICA1_MOUSE NEDD9-interacting protein with calponin ho... 62 2e-09
sp|Q7RTP6|MICA3_HUMAN Protein MICAL-3 OS=Homo sapiens GN=MICAL3 ... 61 3e-09
sp|P36201|CRIP2_RAT Cysteine-rich protein 2 OS=Rattus norvegicus... 61 3e-09
sp|Q9DCT8|CRIP2_MOUSE Cysteine-rich protein 2 OS=Mus musculus GN... 61 3e-09
sp|O94851|MICA2_HUMAN Protein MICAL-2 OS=Homo sapiens GN=MICAL2 ... 60 5e-09
sp|Q8TDZ2|MICA1_HUMAN NEDD9-interacting protein with calponin ho... 60 7e-09
sp|Q24400|MLP2_DROME Muscle LIM protein Mlp84B OS=Drosophila mel... 59 9e-09
sp|P34416|LASP1_CAEEL LIM and SH3 domain protein F42H10.3 OS=Cae... 59 9e-09
>sp|P29675|SF3_HELAN Pollen-specific protein SF3 OS=Helianthus
annuus GN=SF3 PE=2 SV=1
Length = 219
Score = 167 bits (422), Expect = 3e-41
Identities = 81/144 (56%), Positives = 102/144 (70%)
Frame = +1
Query: 55 AFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPH 234
+F GT QKC C KTVY+VD+L A+ VYHKACFRCHHCN TLKLSN++SF+G +YC+ H
Sbjct: 3 SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62
Query: 235 FDQLFKRTGSLDKSFESGVPKTPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTVYP 414
FDQLFKRTGSL+KSF+ G PK +R F E+++ + +S F GT++KC AC K VYP
Sbjct: 63 FDQLFKRTGSLEKSFD-GTPKF--KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYP 119
Query: 415 IEKVKRGWYAVPQGMF*SVAMGGC 486
IE+VK A + F GGC
Sbjct: 120 IERVKVDGTAYHRACF-KCCHGGC 142
Score = 81.3 bits (199), Expect = 2e-15
Identities = 34/69 (49%), Positives = 45/69 (65%)
Frame = +1
Query: 58 FAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPHF 237
F GT+ KC AC K VY ++++ D YH+ACF+C H T+ SNY + EG LYCK H
Sbjct: 103 FEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHH 162
Query: 238 DQLFKRTGS 264
QLFK+ G+
Sbjct: 163 IQLFKKKGN 171
>sp|Q4U4S6|XIRP2_MOUSE Xin actin-binding repeat-containing protein 2
OS=Mus musculus GN=Xirp2 PE=1 SV=1
Length = 3784
Score = 92.8 bits (229), Expect = 7e-19
Identities = 39/75 (52%), Positives = 50/75 (66%)
Frame = +1
Query: 55 AFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPH 234
AF ++ C C KTVY ++ L AD +HK+CFRCHHC+ L L NY+S G +YCKPH
Sbjct: 3249 AFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPH 3308
Query: 235 FDQLFKRTGSLDKSF 279
F QLFK G+ D+ F
Sbjct: 3309 FKQLFKSKGNYDEGF 3323
>sp|Q1LZA7|LIMD2_BOVIN LIM domain-containing protein 2 OS=Bos taurus
GN=LIMD2 PE=2 SV=1
Length = 128
Score = 88.2 bits (217), Expect = 2e-17
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Frame = +1
Query: 4 SRAAFGAGEICSSSAAMAF---AGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCN 174
S A G G + + +F A ++ C AC KTVY +++L AD +++H +CF C HC+
Sbjct: 13 SHEAKGGGSSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKHCH 72
Query: 175 GTLKLSNYSSFEGTLYCKPHFDQLFKRTGSLDKSF 279
L L +Y++ G YCKPHF QLFK G+ D+ F
Sbjct: 73 TKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 107
Score = 30.4 bits (67), Expect = 4.5
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 298 TPKSVDRGFDGESKTP--TKFASIFSGTQEKCLACGKTVYPIEKV 426
TP +G G S T +K S+ + +E C AC KTVYP+E++
Sbjct: 11 TPSHEAKG-GGSSSTVQRSKSFSLRAQVKETCAACQKTVYPMERL 54
>sp|Q9BT23|LIMD2_HUMAN LIM domain-containing protein 2 OS=Homo
sapiens GN=LIMD2 PE=2 SV=1
Length = 127
Score = 87.8 bits (216), Expect = 2e-17
Identities = 36/87 (41%), Positives = 54/87 (62%)
Frame = +1
Query: 19 GAGEICSSSAAMAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNY 198
G+ + S + A ++ C AC KTVY +++L AD +++H +CF C HC+ L L +Y
Sbjct: 20 GSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSY 79
Query: 199 SSFEGTLYCKPHFDQLFKRTGSLDKSF 279
++ G YCKPHF QLFK G+ D+ F
Sbjct: 80 AALHGEFYCKPHFQQLFKSKGNYDEGF 106
Score = 32.0 bits (71), Expect = 1.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 298 TPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTVYPIEKV 426
TP +G + +K S+ + +E C AC KTVYP+E++
Sbjct: 11 TPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERL 53
>sp|Q4KM31|LIMD2_RAT LIM domain-containing protein 2 OS=Rattus
norvegicus GN=Limd2 PE=2 SV=1
Length = 128
Score = 87.4 bits (215), Expect = 3e-17
Identities = 36/92 (39%), Positives = 56/92 (60%)
Frame = +1
Query: 4 SRAAFGAGEICSSSAAMAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTL 183
++ + G + S + A ++ C AC KTVY +++L AD +++H +CF C HC+ L
Sbjct: 16 AKGSSGNSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKL 75
Query: 184 KLSNYSSFEGTLYCKPHFDQLFKRTGSLDKSF 279
L +Y++ G YCKPHF QLFK G+ D+ F
Sbjct: 76 SLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGF 107
Score = 33.1 bits (74), Expect = 0.69
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 298 TPKSVDRGFDGESKTP-TKFASIFSGTQEKCLACGKTVYPIEKV 426
TP +G G S +K S+ + +E C AC KTVYP+E++
Sbjct: 11 TPSHEAKGSSGNSTVQRSKSFSLRAQVKETCAACQKTVYPMERL 54
>sp|Q8BGB5|LIMD2_MOUSE LIM domain-containing protein 2 OS=Mus
musculus GN=Limd2 PE=2 SV=1
Length = 128
Score = 87.4 bits (215), Expect = 3e-17
Identities = 35/92 (38%), Positives = 57/92 (61%)
Frame = +1
Query: 4 SRAAFGAGEICSSSAAMAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTL 183
++ + G+ + S + A ++ C AC KTVY +++L AD +++H +CF C HC+ L
Sbjct: 16 AKGSSGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKL 75
Query: 184 KLSNYSSFEGTLYCKPHFDQLFKRTGSLDKSF 279
L +Y++ G YC+PHF QLFK G+ D+ F
Sbjct: 76 SLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGF 107
Score = 33.1 bits (74), Expect = 0.69
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 298 TPKSVDRGFDGESKTP-TKFASIFSGTQEKCLACGKTVYPIEKV 426
TP +G G S +K S+ + +E C AC KTVYP+E++
Sbjct: 11 TPSHEAKGSSGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERL 54
>sp|Q9ERG0|LIMA1_MOUSE LIM domain and actin-binding protein 1 OS=Mus
musculus GN=Lima1 PE=1 SV=2
Length = 753
Score = 86.7 bits (213), Expect = 5e-17
Identities = 37/81 (45%), Positives = 52/81 (64%)
Frame = +1
Query: 37 SSSAAMAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGT 216
S +A A ++ C C KTVY +++L A+ V+H +CFRC +CN L L Y+S G
Sbjct: 374 SKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGR 433
Query: 217 LYCKPHFDQLFKRTGSLDKSF 279
+YCKPHF+QLFK G+ D+ F
Sbjct: 434 IYCKPHFNQLFKSKGNYDEGF 454
Score = 30.0 bits (66), Expect = 5.8
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 340 TPTKFASIFSG-TQEKCLACGKTVYPIEKV 426
+P+K A F +E C+ C KTVYP+E++
Sbjct: 372 SPSKTAKKFQAPAKESCVECQKTVYPMERL 401
>sp|Q9UHB6|LIMA1_HUMAN LIM domain and actin-binding protein 1
OS=Homo sapiens GN=LIMA1 PE=1 SV=1
Length = 759
Score = 85.5 bits (210), Expect = 1e-16
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +1
Query: 61 AGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPHFD 240
A ++ C C KTVY +++L A+ V+H +CFRC +CN L L Y+S G +YCKPHF+
Sbjct: 384 APARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFN 443
Query: 241 QLFKRTGSLDKSF 279
QLFK G+ D+ F
Sbjct: 444 QLFKSKGNYDEGF 456
Score = 30.0 bits (66), Expect = 5.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 331 ESKTPTKFASIFSGTQEKCLACGKTVYPIEKV 426
ES P + +E C+ C KTVYP+E++
Sbjct: 372 ESSPPKAMKKFQAPARETCVECQKTVYPMERL 403
>sp|O60952|LIME_DICDI LIM domain-containing protein E
OS=Dictyostelium discoideum GN=limE PE=1 SV=1
Length = 199
Score = 70.1 bits (170), Expect = 5e-12
Identities = 33/82 (40%), Positives = 42/82 (51%)
Frame = +1
Query: 76 KCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPHFDQLFKR 255
KC AC KT Y ++ + A+N YHK CF+C CN TL + + SFEG LYC H ++
Sbjct: 6 KCGACAKTAYPLESVVANNNSYHKGCFKCSTCNSTLNVKTFKSFEGKLYCPVHTPKV-SA 64
Query: 256 TGSLDKSFESGVPKTPKSVDRG 321
T D PK V G
Sbjct: 65 TAVTDSVALKNALNAPKKVAEG 86
>sp|P50461|CSRP3_HUMAN Cysteine and glycine-rich protein 3 OS=Homo
sapiens GN=CSRP3 PE=1 SV=1
Length = 194
Score = 69.7 bits (169), Expect = 7e-12
Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Frame = +1
Query: 64 GTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPHFDQ 243
G KC AC KTVY +++ + +HK CF C C L + ++ E +YCK + +
Sbjct: 5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGR 64
Query: 244 LFKRTG----------SLDKSFESGV-----PKTPKSVDRGFDGESKTPTKFASIFSGTQ 378
+ G S D G+ PK +SV + P+KF + F G
Sbjct: 65 RYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSV------TTSNPSKFTAKF-GES 117
Query: 379 EKCLACGKTVYPIEKVKRG 435
EKC CGK+VY EKV G
Sbjct: 118 EKCPRCGKSVYAAEKVMGG 136
Score = 59.3 bits (142), Expect = 9e-09
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +1
Query: 64 GTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPHFDQ 243
G +KC CGK+VY +++ +HK CFRC C +L+ +N + +G LYCK + +
Sbjct: 115 GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAK 174
Query: 244 LFKRTG 261
F TG
Sbjct: 175 NFGPTG 180
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9NNM5 |
| Definition |
tr|A9NNM5|A9NNM5_PICSI Putative uncharacterized protein OS=Picea sitchensis |
| Align length |
125 |
| Score (bit) |
213.0 |
| E-value |
5.0e-54 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955517|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_E24, 5'
(486 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9NNM5|A9NNM5_PICSI Putative uncharacterized protein OS=Picea... 213 5e-54
tr|A9NSQ9|A9NSQ9_PICSI Putative uncharacterized protein OS=Picea... 209 7e-53
tr|B1PPT4|B1PPT4_PINPS LIM2 transcription factor (Fragment) OS=P... 204 3e-52
tr|B1PPU5|B1PPU5_PINTA LIM2 transcription factor (Fragment) OS=P... 202 5e-51
tr|A7PD59|A7PD59_VITVI Chromosome chr17 scaffold_12, whole genom... 199 4e-50
tr|Q94JX5|Q94JX5_ARATH Similar to transcription factor SF3 (Pir|... 191 2e-47
tr|Q306K1|Q306K1_BRANA LIM domain protein OS=Brassica napus GN=L... 191 2e-47
tr|Q9XHG9|Q9XHG9_HELAN LIM domain protein WLIM-1 OS=Helianthus a... 190 4e-47
tr|Q9SP33|Q9SP33_HELAN LIM domain protein WLIM1 OS=Helianthus an... 189 6e-47
tr|Q56R05|Q56R05_SOLLC Putative pollen specific LIM domain-conta... 187 8e-47
tr|A9PDY3|A9PDY3_POPTR Putative uncharacterized protein OS=Popul... 187 2e-46
tr|A0SVL3|A0SVL3_9ROSI LIM domain protein GLIM1b OS=Populus trem... 187 2e-46
tr|Q8SBC9|Q8SBC9_POPKI Transcription factor LIM OS=Populus kitak... 187 3e-46
tr|Q8SBC8|Q8SBC8_POPKI Transcription factor LIM OS=Populus kitak... 187 3e-46
tr|Q53J16|Q53J16_SOLLC Pollen-specific protein SF3, putative OS=... 187 3e-46
tr|A5BYE7|A5BYE7_VITVI Putative uncharacterized protein (Chromos... 186 4e-46
tr|Q9SNX4|Q9SNX4_TOBAC Pollen specific LIM domain protein 1a OS=... 186 5e-46
tr|Q59HI3|Q59HI3_EUCGL Transcription factor lim1 OS=Eucalyptus g... 186 7e-46
tr|Q59HI2|Q59HI2_EUCCA Transcription factor lim1 OS=Eucalyptus c... 186 7e-46
tr|B7FH07|B7FH07_MEDTR Putative uncharacterized protein OS=Medic... 185 9e-46
tr|A9PAZ8|A9PAZ8_POPTR Putative uncharacterized protein OS=Popul... 185 9e-46
tr|Q9SY62|Q9SY62_ARATH F14N23.8 OS=Arabidopsis thaliana PE=4 SV=1 185 1e-45
tr|Q9SNX3|Q9SNX3_TOBAC Pollen specific LIM domain protein 1b OS=... 185 1e-45
tr|A0SVL6|A0SVL6_9ROSI LIM domain protein WLIM1b OS=Populus trem... 185 1e-45
tr|A0SVL5|A0SVL5_9ROSI LIM domain protein WLIM1a OS=Populus trem... 185 1e-45
tr|Q9SP40|Q9SP40_TOBAC LIM domain protein PLIM1 OS=Nicotiana tab... 184 1e-45
tr|A9PG33|A9PG33_POPTR Putative uncharacterized protein OS=Popul... 184 2e-45
tr|A9PB06|A9PB06_POPTR Putative uncharacterized protein OS=Popul... 184 2e-45
tr|Q9SXJ0|Q9SXJ0_TOBAC Transcription factor Ntlim1 OS=Nicotiana ... 184 3e-45
tr|A0SVL2|A0SVL2_9ROSI LIM domain protein GLIM1a OS=Populus trem... 183 4e-45
>tr|A9NNM5|A9NNM5_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 187
Score = 213 bits (541), Expect = 5e-54
Identities = 102/125 (81%), Positives = 111/125 (88%)
Frame = +1
Query: 52 MAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKP 231
MAFAGTQQKCKAC KTVYVVDQLTAD V+HKACFRCHHCNGTLKLSNYSSFEG LYCKP
Sbjct: 1 MAFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKP 60
Query: 232 HFDQLFKRTGSLDKSFESGVPKTPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTVY 411
HFDQLFKRTGSLDKSFE G PK K+ ++ DGE KTP++ +++FSGTQEKCLACG TVY
Sbjct: 61 HFDQLFKRTGSLDKSFE-GTPKAVKN-EKLNDGEIKTPSRVSALFSGTQEKCLACGNTVY 118
Query: 412 PIEKV 426
PIEKV
Sbjct: 119 PIEKV 123
Score = 85.5 bits (210), Expect = 1e-15
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +1
Query: 25 GEICSSSAAMA-FAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYS 201
GEI + S A F+GTQ+KC ACG TVY +++++ + V YHK CF+C H + SNY
Sbjct: 91 GEIKTPSRVSALFSGTQEKCLACGNTVYPIEKVSVEGVGYHKQCFKCIHGGCVISPSNYI 150
Query: 202 SFEGTLYCKPHFDQLFKRTGS 264
+ EG LYCK H QLFK G+
Sbjct: 151 AIEGRLYCKHHHAQLFKEKGN 171
>tr|A9NSQ9|A9NSQ9_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 191
Score = 209 bits (531), Expect = 7e-53
Identities = 97/125 (77%), Positives = 112/125 (89%)
Frame = +1
Query: 52 MAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKP 231
MAFAGT QKCKAC KTVY+VDQLTADN VYHK+CFRCHHCNGTLKLSNYSSFEG LYCKP
Sbjct: 1 MAFAGTTQKCKACEKTVYLVDQLTADNSVYHKSCFRCHHCNGTLKLSNYSSFEGVLYCKP 60
Query: 232 HFDQLFKRTGSLDKSFESGVPKTPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTVY 411
HFDQLFKRTGSLDKSFE+ +P+ ++ D+ + ESKTP + +++FSGTQ+KC+ACGKTVY
Sbjct: 61 HFDQLFKRTGSLDKSFEA-IPRASRN-DKTQENESKTPNRVSTMFSGTQDKCVACGKTVY 118
Query: 412 PIEKV 426
PIEKV
Sbjct: 119 PIEKV 123
Score = 81.3 bits (199), Expect = 2e-14
Identities = 33/72 (45%), Positives = 46/72 (63%)
Frame = +1
Query: 58 FAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPHF 237
F+GTQ KC ACGKTVY ++++ D YH+ CF+C H + SNY + EG LYC+ H
Sbjct: 103 FSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRLYCRHHS 162
Query: 238 DQLFKRTGSLDK 273
QLF+ G+ +
Sbjct: 163 SQLFREKGNFSQ 174
>tr|B1PPT4|B1PPT4_PINPS LIM2 transcription factor (Fragment)
OS=Pinus pinaster GN=LIM2 PE=4 SV=1
Length = 182
Score = 204 bits (519), Expect(3) = 3e-52
Identities = 93/125 (74%), Positives = 112/125 (89%)
Frame = +1
Query: 52 MAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKP 231
MAFAGT QKCKAC KTVY+VDQLTADN V+HK+CFRCHHCNGTLKLSNYSSFEG LYCKP
Sbjct: 1 MAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKP 60
Query: 232 HFDQLFKRTGSLDKSFESGVPKTPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTVY 411
HFDQLFKRTGSLDKSF + +P+ ++ D+ + E++TP++ +++FSGTQ+KC+ACGKTVY
Sbjct: 61 HFDQLFKRTGSLDKSF-AAIPRASRN-DKMHENENRTPSRVSALFSGTQDKCVACGKTVY 118
Query: 412 PIEKV 426
PIEKV
Sbjct: 119 PIEKV 123
Score = 23.9 bits (50), Expect(3) = 3e-52
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 428 SVDGMLYHKACFK 466
+VDG YH+ CFK
Sbjct: 124 AVDGTSYHRPCFK 136
Score = 21.9 bits (45), Expect(3) = 3e-52
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 453 RHVLKCCHGG 482
R KCCHGG
Sbjct: 132 RPCFKCCHGG 141
Score = 82.0 bits (201), Expect = 1e-14
Identities = 34/78 (43%), Positives = 48/78 (61%)
Frame = +1
Query: 40 SSAAMAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTL 219
S + F+GTQ KC ACGKTVY ++++ D YH+ CF+C H + SNY + EG L
Sbjct: 97 SRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGGCVISPSNYVAHEGRL 156
Query: 220 YCKPHFDQLFKRTGSLDK 273
YC+ H QLF+ G+ +
Sbjct: 157 YCRHHSSQLFREKGNFSQ 174
>tr|B1PPU5|B1PPU5_PINTA LIM2 transcription factor (Fragment)
OS=Pinus taeda GN=LIM2 PE=4 SV=1
Length = 122
Score = 202 bits (515), Expect = 5e-51
Identities = 92/124 (74%), Positives = 111/124 (89%)
Frame = +1
Query: 52 MAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKP 231
MAFAGT QKCKAC KTVY+VDQLTADN V+HK+CFRCHHCNGTLKLSNYSSFEG LYCKP
Sbjct: 1 MAFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKP 60
Query: 232 HFDQLFKRTGSLDKSFESGVPKTPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTVY 411
HFDQLFKRTGSLDKSF + +P+ ++ D+ + E++TP++ +++FSGTQ+KC+ACGKTVY
Sbjct: 61 HFDQLFKRTGSLDKSF-AAIPRASRN-DKMHENENRTPSRVSALFSGTQDKCVACGKTVY 118
Query: 412 PIEK 423
PIEK
Sbjct: 119 PIEK 122
Score = 35.8 bits (81), Expect = 1.1
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 40 SSAAMAFAGTQQKCKACGKTVYVVDQ 117
S + F+GTQ KC ACGKTVY +++
Sbjct: 97 SRVSALFSGTQDKCVACGKTVYPIEK 122
>tr|A7PD59|A7PD59_VITVI Chromosome chr17 scaffold_12, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016150001
PE=4 SV=1
Length = 182
Score = 199 bits (507), Expect = 4e-50
Identities = 96/123 (78%), Positives = 106/123 (86%)
Frame = +1
Query: 58 FAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPHF 237
FAGT QKCKAC KTVY+VD+LTADN VYHKACFRCHHC GTLKLSNYSSFEG LYCKPHF
Sbjct: 4 FAGTTQKCKACEKTVYLVDELTADNKVYHKACFRCHHCKGTLKLSNYSSFEGVLYCKPHF 63
Query: 238 DQLFKRTGSLDKSFESGVPKTPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTVYPI 417
DQLFK TGSLDKSFE G PKT +SVD+G +T +K +S+F+GTQEKC+AC KTVYPI
Sbjct: 64 DQLFKMTGSLDKSFE-GAPKTVRSVDQG-----QTNSKVSSMFAGTQEKCVACKKTVYPI 117
Query: 418 EKV 426
EKV
Sbjct: 118 EKV 120
Score = 85.9 bits (211), Expect = 9e-16
Identities = 38/79 (48%), Positives = 50/79 (63%)
Frame = +1
Query: 37 SSSAAMAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGT 216
+S + FAGTQ+KC AC KTVY ++++ D YHKACFRC H T+ SNY + E
Sbjct: 93 NSKVSSMFAGTQEKCVACKKTVYPIEKVGVDGTSYHKACFRCTHGGCTISPSNYIAHEHR 152
Query: 217 LYCKPHFDQLFKRTGSLDK 273
LYC+ H QLFK G+ +
Sbjct: 153 LYCRHHHSQLFKEKGNFSQ 171
>tr|Q94JX5|Q94JX5_ARATH Similar to transcription factor SF3
(Pir|IS37656) (Putative transcription factor)
OS=Arabidopsis thaliana GN=At1g10200 PE=2 SV=1
Length = 190
Score = 191 bits (485), Expect = 2e-47
Identities = 95/145 (65%), Positives = 107/145 (73%)
Frame = +1
Query: 52 MAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKP 231
MAFAGT QKC AC KTVY+VD+LTADN VYHKACFRCHHC GTLKLSNY+SFEG LYC+P
Sbjct: 1 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
Query: 232 HFDQLFKRTGSLDKSFESGVPKTPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTVY 411
HFDQ FKRTGSL+KSFE G PK K DR +GE TK +++F GT+EKC+ C KTVY
Sbjct: 61 HFDQNFKRTGSLEKSFE-GTPKIGKP-DRPLEGERPAGTKVSNMFGGTREKCVGCDKTVY 118
Query: 412 PIEKVKRGWYAVPQGMF*SVAMGGC 486
PIEKV + F GGC
Sbjct: 119 PIEKVSVNGTLYHKSCF-KCTHGGC 142
Score = 80.5 bits (197), Expect = 4e-14
Identities = 33/72 (45%), Positives = 48/72 (66%)
Frame = +1
Query: 58 FAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPHF 237
F GT++KC C KTVY +++++ + +YHK+CF+C H T+ SNY + EG LYCK H
Sbjct: 103 FGGTREKCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHH 162
Query: 238 DQLFKRTGSLDK 273
QL K G+L +
Sbjct: 163 IQLIKEKGNLSQ 174
>tr|Q306K1|Q306K1_BRANA LIM domain protein OS=Brassica napus GN=LIM
PE=2 SV=1
Length = 189
Score = 191 bits (485), Expect = 2e-47
Identities = 95/145 (65%), Positives = 107/145 (73%)
Frame = +1
Query: 52 MAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKP 231
MAFAGT QKC AC KTVY+VD+LTADN VYHKACFRCHHC GTLKLSNY+SFEG LYC+P
Sbjct: 1 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGALYCRP 60
Query: 232 HFDQLFKRTGSLDKSFESGVPKTPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTVY 411
HFDQ FKRTGSL+KSFE G PK K DR +GE TK +++F GT+EKC+ C KTVY
Sbjct: 61 HFDQNFKRTGSLEKSFE-GTPKIGKP-DRPLEGERPAGTKVSNMFGGTREKCVGCDKTVY 118
Query: 412 PIEKVKRGWYAVPQGMF*SVAMGGC 486
PIEKV + F GGC
Sbjct: 119 PIEKVSVNGTLYHKSCF-KCTHGGC 142
Score = 80.9 bits (198), Expect = 3e-14
Identities = 37/86 (43%), Positives = 52/86 (60%)
Frame = +1
Query: 58 FAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPHF 237
F GT++KC C KTVY +++++ + +YHK+CF+C H T+ SNY + EG LYCK H
Sbjct: 103 FGGTREKCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHH 162
Query: 238 DQLFKRTGSLDKSFESGVPKTPKSVD 315
QL K G+L + E G VD
Sbjct: 163 IQLIKEKGNLSQ-LEGGDNAAKDKVD 187
>tr|Q9XHG9|Q9XHG9_HELAN LIM domain protein WLIM-1 OS=Helianthus
annuus GN=WLIM-1 PE=4 SV=1
Length = 188
Score = 190 bits (482), Expect = 4e-47
Identities = 94/145 (64%), Positives = 107/145 (73%)
Frame = +1
Query: 52 MAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKP 231
MAFAGT QKC AC KTVY+VD+LTADN V+HKACFRCHHCNGTLKLSNY+SFEG LYC+P
Sbjct: 1 MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
Query: 232 HFDQLFKRTGSLDKSFESGVPKTPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTVY 411
HFDQLFK+TGSLDKSFE G PK K + DGE K +S+F GT++KCL C TVY
Sbjct: 61 HFDQLFKKTGSLDKSFE-GTPKIVKQ-PKTIDGEKPMANKVSSMFVGTKDKCLGCKNTVY 118
Query: 412 PIEKVKRGWYAVPQGMF*SVAMGGC 486
P EKV A + F + GGC
Sbjct: 119 PTEKVSVNGTAYHKSCF-KCSHGGC 142
Score = 75.9 bits (185), Expect = 1e-12
Identities = 31/79 (39%), Positives = 47/79 (59%)
Frame = +1
Query: 37 SSSAAMAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGT 216
++ + F GT+ KC C TVY ++++ + YHK+CF+C H T+ SNY + EG
Sbjct: 96 ANKVSSMFVGTKDKCLGCKNTVYPTEKVSVNGTAYHKSCFKCSHGGCTISPSNYIAHEGH 155
Query: 217 LYCKPHFDQLFKRTGSLDK 273
LYC+ H QL K G+L +
Sbjct: 156 LYCRHHHTQLIKEKGNLSQ 174
>tr|Q9SP33|Q9SP33_HELAN LIM domain protein WLIM1 OS=Helianthus
annuus GN=WLIM1 PE=2 SV=1
Length = 188
Score = 189 bits (480), Expect = 6e-47
Identities = 93/147 (63%), Positives = 108/147 (73%), Gaps = 2/147 (1%)
Frame = +1
Query: 52 MAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKP 231
MAFAGT QKC AC KTVY+VD+LTADN V+HKACFRCHHCNGTLKLSNY+SFEG LYC+P
Sbjct: 1 MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60
Query: 232 HFDQLFKRTGSLDKSFES--GVPKTPKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKT 405
HFDQLFK+TGSLDKSFE + K PK++ DGE K +S+F GT++KCL C T
Sbjct: 61 HFDQLFKKTGSLDKSFEGTPNIVKQPKTI----DGEKPMANKVSSMFVGTKDKCLGCKNT 116
Query: 406 VYPIEKVKRGWYAVPQGMF*SVAMGGC 486
VYP EKV A + F + GGC
Sbjct: 117 VYPTEKVSVNGTAYHKSCF-KCSHGGC 142
Score = 75.9 bits (185), Expect = 1e-12
Identities = 31/79 (39%), Positives = 47/79 (59%)
Frame = +1
Query: 37 SSSAAMAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGT 216
++ + F GT+ KC C TVY ++++ + YHK+CF+C H T+ SNY + EG
Sbjct: 96 ANKVSSMFVGTKDKCLGCKNTVYPTEKVSVNGTAYHKSCFKCSHGGCTISPSNYIAHEGH 155
Query: 217 LYCKPHFDQLFKRTGSLDK 273
LYC+ H QL K G+L +
Sbjct: 156 LYCRHHHTQLIKEKGNLSQ 174
>tr|Q56R05|Q56R05_SOLLC Putative pollen specific LIM
domain-containing protein OS=Solanum lycopersicum PE=4
SV=1
Length = 179
Score = 187 bits (474), Expect(2) = 8e-47
Identities = 90/126 (71%), Positives = 103/126 (81%), Gaps = 2/126 (1%)
Frame = +1
Query: 55 AFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGTLYCKPH 234
+F GT QKCKAC KTVY+VDQLTADN VYHKACFRCHHC GTLKLSNY+SFEG LYC+PH
Sbjct: 3 SFGGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 62
Query: 235 FDQLFKRTGSLDKSFESGVPKT--PKSVDRGFDGESKTPTKFASIFSGTQEKCLACGKTV 408
FDQLFK TGSLDKSFE G PKT +S D+G + +K +S+F GTQ+KC+AC KTV
Sbjct: 63 FDQLFKMTGSLDKSFE-GAPKTVRERSADQG------SNSKVSSLFGGTQDKCVACKKTV 115
Query: 409 YPIEKV 426
YP+EKV
Sbjct: 116 YPLEKV 121
Score = 23.9 bits (50), Expect(2) = 8e-47
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 428 SVDGMLYHKACFK 466
+VDG YH+ CFK
Sbjct: 122 AVDGTSYHRPCFK 134
Score = 77.4 bits (189), Expect = 3e-13
Identities = 33/79 (41%), Positives = 46/79 (58%)
Frame = +1
Query: 37 SSSAAMAFAGTQQKCKACGKTVYVVDQLTADNVVYHKACFRCHHCNGTLKLSNYSSFEGT 216
+S + F GTQ KC AC KTVY ++++ D YH+ CF+C H + SNY + E
Sbjct: 94 NSKVSSLFGGTQDKCVACKKTVYPLEKVAVDGTSYHRPCFKCSHGGCVISPSNYVAHEHR 153
Query: 217 LYCKPHFDQLFKRTGSLDK 273
LYC+ H QLFK G+ +
Sbjct: 154 LYCRHHHTQLFKERGNFSQ 172
|