DK955519
Clone id TST39A01NGRL0023_F02
Library
Length 611
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_F02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
ATCCAGATACTTTTGAAGCTTGCATGGAGGCAATGGCGTCCTCGTTAAAGCCGCCTGCCT
GCTCGTTTGTGAAGGTTACTCGAAGATTAGAAAGCAGACAGAGCAAGCTCTATGCAAAAT
CATTATGGCATCAGCCTTTTGGTCTTCAGTCAAGGCCAAGCAGGATATGTTTACAGGTCG
ATTGCTCCGCAAGGGGCCTCGAAGAGGTGAAGCCACTTCAAGCTCCAAAGTTGCAGGACA
AATTTGGCTCAGAGAATCTGCAATTTTCGGATGTTGCTGGTAGGACTGTGGCAGAGCTCA
AACTGGCATCAGGTACCTCAGTACGCCTACTATTGGCAGAGGCACGGATCACATCTTACA
GCTGCCGCCTTTGGCATGGTAGCTGCGAAGAAATGTTGTATACTGATGTGTCAGAAAGCT
CCGTCAACGGCATTGATAGAAGTGTACATGGGGCTACTCCTCAGCAGTTTTTTGTAACTG
GTGGCATGGCTCCCTCTTTAGCTCACTCTCTTGATCCTCACATTAGCCTTTGCAATAACA
ATTGGTCAGTACAGTCGGTGGCAGTCGATCCAAAGGAGCACGTTCAGGGTTTGCGAAGGT
CCTTACTCTTT
■■Homology search results ■■ -
sp_hit_id A7MV92
Definition sp|A7MV92|Y1411_VIBHB UPF0061 protein VIBHAR_01411 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
Align length 103
Score (bit) 33.1
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955519|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_F02, 5'
(611 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A7MV92|Y1411_VIBHB UPF0061 protein VIBHAR_01411 OS=Vibrio har... 33 1.2
sp|Q87R88|Y909_VIBPA UPF0061 protein VP0909 OS=Vibrio parahaemol... 32 3.3
sp|A4YRR9|PURL_BRASO Phosphoribosylformylglycinamidine synthase ... 31 5.7
sp|Q7ZV80|SPF30_DANRE Survival of motor neuron-related-splicing ... 30 9.7
sp|A5EMI1|PURL_BRASB Phosphoribosylformylglycinamidine synthase ... 30 9.7

>sp|A7MV92|Y1411_VIBHB UPF0061 protein VIBHAR_01411 OS=Vibrio
harveyi (strain ATCC BAA-1116 / BB120) GN=VIBHAR_01411
PE=3 SV=1
Length = 489

Score = 33.1 bits (74), Expect = 1.2
Identities = 27/103 (26%), Positives = 40/103 (38%)
Frame = +3

Query: 54 PACSFVKVTRRLESRQSKLYAKSLWHQPFGLQSRPSRICLQVDCSARGLEEVKPLQAPKL 233
P+ F VT +L + + Q FGL + + L V + PL
Sbjct: 17 PSAFFTYVTPQLLDNTRWVVWNGEFAQQFGLPAAENEELLNVFAGQKEFAPFAPLAMKYA 76

Query: 234 QDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYS 362
+FG N D G +AE++ GT + L A +T YS
Sbjct: 77 GHQFGVYNPDLGDGRGLLLAEMQHQDGTWFDIHLKGAGLTPYS 119


>sp|Q87R88|Y909_VIBPA UPF0061 protein VP0909 OS=Vibrio
parahaemolyticus GN=VP0909 PE=3 SV=1
Length = 489

Score = 31.6 bits (70), Expect = 3.3
Identities = 23/77 (29%), Positives = 33/77 (42%)
Frame = +3

Query: 132 QPFGLQSRPSRICLQVDCSARGLEEVKPLQAPKLQDKFGSENLQFSDVAGRTVAELKLAS 311
Q FGL + + L V E +PL +FG N D G +AE++ +
Sbjct: 43 QQFGLPAAQNDELLAVFSGQSEFEPFRPLAMKYAGHQFGVYNPDLGDGRGLLLAEIEHQN 102

Query: 312 GTSVRLLLAEARITSYS 362
GT + L A +T YS
Sbjct: 103 GTWFDIHLKGAGLTPYS 119


>sp|A4YRR9|PURL_BRASO Phosphoribosylformylglycinamidine synthase 2
OS=Bradyrhizobium sp. (strain ORS278) GN=purL PE=3 SV=1
Length = 736

Score = 30.8 bits (68), Expect = 5.7
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3

Query: 288 VAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGATP-- 461
+AE+ +ASG RLL A A I ++ W G + V E+ + + GA
Sbjct: 638 LAEMAMASGIGARLLAAPASIVPHA--YWFGEDQARYLVTVPETEAGRVLAKMRGANVPC 695

Query: 462 QQFFVTGGMAPSLA 503
+ TGG A ++A
Sbjct: 696 TRIGTTGGTALAIA 709


>sp|Q7ZV80|SPF30_DANRE Survival of motor neuron-related-splicing
factor 30 OS=Danio rerio GN=smndc1 PE=2 SV=1
Length = 237

Score = 30.0 bits (66), Expect = 9.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2

Query: 460 GVAPCTLLSMPLTELSDTSVYNISSQLP 377
GV C + P+T+ +DTS YN+ +P
Sbjct: 209 GVGTCGIADKPMTQYNDTSKYNVRHLMP 236


>sp|A5EMI1|PURL_BRASB Phosphoribosylformylglycinamidine synthase 2
OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=purL PE=3 SV=1
Length = 735

Score = 30.0 bits (66), Expect = 9.7
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3

Query: 288 VAELKLASGTSVRLLLAEARITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGA--TP 461
+AE+ +ASG RLL A A I ++ W G + V E+ + + GA
Sbjct: 638 LAEMAMASGIGARLLAAPASIVPHA--YWFGEDQARYLVTVPETEAGRVLAKMRGAGVPC 695

Query: 462 QQFFVTGGMAPSLA 503
+ TGG A ++A
Sbjct: 696 TRIGTTGGSALAIA 709


tr_hit_id Q9C503
Definition tr|Q9C503|Q9C503_ARATH Putative uncharacterized protein F7A10.12 (Putative uncharacterized protein T18I3.2) OS=Arabidopsis thaliana
Align length 131
Score (bit) 62.4
E-value 2.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955519|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_F02, 5'
(611 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9C503|Q9C503_ARATH Putative uncharacterized protein F7A10.12... 62 2e-08
tr|Q3ECP4|Q3ECP4_ARATH Uncharacterized protein At1g55370.1 (Puta... 62 2e-08
tr|Q8LBH1|Q8LBH1_ARATH Putative uncharacterized protein OS=Arabi... 62 3e-08
tr|A7PW58|A7PW58_VITVI Chromosome chr8 scaffold_34, whole genome... 54 7e-06
tr|A5AUH5|A5AUH5_VITVI Putative uncharacterized protein OS=Vitis... 54 7e-06
tr|Q9XIR6|Q9XIR6_ARATH F13O11.8 protein OS=Arabidopsis thaliana ... 50 1e-04
tr|Q94AQ8|Q94AQ8_ARATH Putative uncharacterized protein At1g6477... 50 1e-04
tr|Q8W307|Q8W307_ORYSA Putative antifreeze glycoprotein OS=Oryza... 45 0.003
tr|Q10CW2|Q10CW2_ORYSJ Os03g0748300 protein OS=Oryza sativa subs... 45 0.003
tr|A3AEA6|A3AEA6_ORYSJ Putative uncharacterized protein OS=Oryza... 45 0.003
tr|A2XM00|A2XM00_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.003
tr|A9SKF3|A9SKF3_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.007
tr|Q8H8C2|Q8H8C2_ORYSJ Putative uncharacterized protein OJ1134F0... 44 0.010
tr|Q10RI6|Q10RI6_ORYSJ Os03g0158300 protein OS=Oryza sativa subs... 44 0.010
tr|B8ANU6|B8ANU6_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.010
tr|A2Q5N9|A2Q5N9_MEDTR Galactose mutarotase-like OS=Medicago tru... 44 0.010
tr|B4FJP7|B4FJP7_MAIZE Putative uncharacterized protein OS=Zea m... 42 0.021
tr|B4FWG2|B4FWG2_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.062
tr|B6U6C8|B6U6C8_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.14
tr|A7PW57|A7PW57_VITVI Chromosome chr8 scaffold_34, whole genome... 37 1.2
tr|A7SEF8|A7SEF8_NEMVE Predicted protein OS=Nematostella vectens... 35 3.4
tr|Q7XIK0|Q7XIK0_ORYSJ Putative peptidyl-prolycis-trans isomeras... 34 5.8
tr|Q7XIJ9|Q7XIJ9_ORYSJ Os07g0565600 protein OS=Oryza sativa subs... 34 5.8
tr|B8B7H0|B8B7H0_ORYSI Putative uncharacterized protein OS=Oryza... 34 5.8
tr|Q2H5Q6|Q2H5Q6_CHAGB Putative uncharacterized protein OS=Chaet... 34 7.6
tr|Q93GL4|Q93GL4_SALTY Conjugative transfer: oriT nicking-unwind... 33 10.0
tr|O66931|O66931_AQUAE Putative uncharacterized protein OS=Aquif... 33 10.0
tr|B5N6B1|B5N6B1_SALET Type IV secretion-like conjugative transf... 33 10.0

>tr|Q9C503|Q9C503_ARATH Putative uncharacterized protein F7A10.12
(Putative uncharacterized protein T18I3.2)
OS=Arabidopsis thaliana GN=T18I3.2 PE=4 SV=1
Length = 354

Score = 62.4 bits (150), Expect = 2e-08
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +3

Query: 213 PLQAPKLQDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEE 392
P+ L+ +F F D+ +A LKL +G+S ++L ITSY R+WHG E
Sbjct: 59 PIDVEYLRREFSGHGATFEDIGETCIARLKLDNGSSANVMLTRGMITSYKVRVWHGGKVE 118

Query: 393 MLYTDVSESSVNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDP 572
+L+T V + ++ + GG++ + S IS +W +Q ++ D
Sbjct: 119 LLHTWVEQEE-------------EEVVIRGGVSSAFRSSDSDEIS----DWRLQGISGDS 161

Query: 573 KEHVQ-GLRRS 602
K+ VQ LRRS
Sbjct: 162 KDCVQMELRRS 172


>tr|Q3ECP4|Q3ECP4_ARATH Uncharacterized protein At1g55370.1
(Putative uncharacterized protein At1g55370)
OS=Arabidopsis thaliana GN=At1g55370 PE=2 SV=1
Length = 308

Score = 62.4 bits (150), Expect = 2e-08
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +3

Query: 213 PLQAPKLQDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEE 392
P+ L+ +F F D+ +A LKL +G+S ++L ITSY R+WHG E
Sbjct: 59 PIDVEYLRREFSGHGATFEDIGETCIARLKLDNGSSANVMLTRGMITSYKVRVWHGGKVE 118

Query: 393 MLYTDVSESSVNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDP 572
+L+T V + ++ + GG++ + S IS +W +Q ++ D
Sbjct: 119 LLHTWVEQEE-------------EEVVIRGGVSSAFRSSDSDEIS----DWRLQGISGDS 161

Query: 573 KEHVQ-GLRRS 602
K+ VQ LRRS
Sbjct: 162 KDCVQMELRRS 172


>tr|Q8LBH1|Q8LBH1_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 354

Score = 62.0 bits (149), Expect = 3e-08
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Frame = +3

Query: 213 PLQAPKLQDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEE 392
P+ L+ +F F D+ +A LKL G+S ++L ITSY R+WHG E
Sbjct: 59 PIDVEYLRREFSGHGATFEDIGETCIARLKLDDGSSANVMLTRGMITSYKVRVWHGGKVE 118

Query: 393 MLYTDVSESSVNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDP 572
+L+T V + ++ + GG++ + S IS +W +Q ++ D
Sbjct: 119 LLHTWVEQEE-------------EEVVIRGGVSSAFRSSDSDEIS----DWRLQGISGDS 161

Query: 573 KEHVQ-GLRRS 602
K+ VQ LRRS
Sbjct: 162 KDCVQMELRRS 172


>tr|A7PW58|A7PW58_VITVI Chromosome chr8 scaffold_34, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025482001
PE=4 SV=1
Length = 349

Score = 53.9 bits (128), Expect = 7e-06
Identities = 32/125 (25%), Positives = 56/125 (44%)
Frame = +3

Query: 213 PLQAPKLQDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEE 392
P L+ +F + F + V ++ L +G+ L+L ITSY +WHG E
Sbjct: 51 PANVDYLETQFSGHGVTFEGIGDSYVVKMGLENGSLASLMLPSGLITSYKAPMWHGGTLE 110

Query: 393 MLYTDVSESSVNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDP 572
+L+T V+E + + GG++ +L D IS ++W +Q V +
Sbjct: 111 VLHTTVTEEDSGAV-------------IQGGVSLALECESDGGISWSPSSWILQDVRGNA 157

Query: 573 KEHVQ 587
+E +Q
Sbjct: 158 EELIQ 162


>tr|A5AUH5|A5AUH5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_016184 PE=4 SV=1
Length = 754

Score = 53.9 bits (128), Expect = 7e-06
Identities = 32/125 (25%), Positives = 56/125 (44%)
Frame = +3

Query: 213 PLQAPKLQDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEE 392
P L+ +F + F + V ++ L +G+ L+L ITSY +WHG E
Sbjct: 421 PANVDYLETQFSGHGVTFEGIGDSYVVKMGLENGSLASLMLPSGLITSYKAPMWHGGTLE 480

Query: 393 MLYTDVSESSVNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDP 572
+L+T V+E + + GG++ +L D IS ++W +Q V +
Sbjct: 481 VLHTTVTEEDSGAV-------------IQGGVSLALECESDGGISWSPSSWILQDVRGNA 527

Query: 573 KEHVQ 587
+E +Q
Sbjct: 528 EELIQ 532



Score = 36.6 bits (83), Expect = 1.2
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3

Query: 231 LQDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYSCRL-W-HGSCEEMLYT 404
L KFG + ++F + + EL + +G+S+RL + + +TSY ++ W EE+LYT
Sbjct: 84 LDQKFGRKGIKFLESGNVPLVELTVRNGSSLRLRIPDGLVTSYKPKVNWKDDGFEEVLYT 143


>tr|Q9XIR6|Q9XIR6_ARATH F13O11.8 protein OS=Arabidopsis thaliana
GN=F13O11.8 PE=4 SV=1
Length = 338

Score = 49.7 bits (117), Expect = 1e-04
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +3

Query: 204 EVKPLQAPKLQDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYSCRLW--H 377
+ + + KL+DKFG + ++FS+ + ELK+ +G+S++L L++A + SY +++
Sbjct: 24 QTQTINTEKLEDKFGRKGIKFSESNNIPMVELKVRNGSSLKLSLSDAHVLSYKPKVYWKD 83

Query: 378 GSCEEMLYTDVSESSVNGI 434
EE+LYT + S G+
Sbjct: 84 EGFEEVLYTVDGDESRGGV 102


>tr|Q94AQ8|Q94AQ8_ARATH Putative uncharacterized protein At1g64770
(Putative uncharacterized protein) OS=Arabidopsis
thaliana GN=At1g64770 PE=2 SV=1
Length = 348

Score = 49.7 bits (117), Expect = 1e-04
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +3

Query: 204 EVKPLQAPKLQDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYSCRLW--H 377
+ + + KL+DKFG + ++FS+ + ELK+ +G+S++L L++A + SY +++
Sbjct: 24 QTQTINTEKLEDKFGRKGIKFSESNNIPMVELKVRNGSSLKLSLSDAHVLSYKPKVYWKD 83

Query: 378 GSCEEMLYTDVSESSVNGI 434
EE+LYT + S G+
Sbjct: 84 EGFEEVLYTVDGDESRGGV 102


>tr|Q8W307|Q8W307_ORYSA Putative antifreeze glycoprotein OS=Oryza
sativa GN=OSJNBa0069E14.14 PE=4 SV=1
Length = 411

Score = 45.1 bits (105), Expect = 0.003
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3

Query: 213 PLQAPKLQDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEE 392
P L +F + F V G +++L +G++ +LL +TSY +WHG+ E
Sbjct: 75 PPNVDYLAAEFAGHGVSFEAVGGSCAVKMELRNGSAAHVLLPGGLVTSYKPAMWHGAPTE 134

Query: 393 MLYTDVSE 416
+++T V+E
Sbjct: 135 VIHTTVAE 142


>tr|Q10CW2|Q10CW2_ORYSJ Os03g0748300 protein OS=Oryza sativa subsp.
japonica GN=Os03g0748300 PE=2 SV=1
Length = 411

Score = 45.1 bits (105), Expect = 0.003
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3

Query: 213 PLQAPKLQDKFGSENLQFSDVAGRTVAELKLASGTSVRLLLAEARITSYSCRLWHGSCEE 392
P L +F + F V G +++L +G++ +LL +TSY +WHG+ E
Sbjct: 75 PPNVDYLAAEFAGHGVSFEAVGGSCAVKMELRNGSAAHVLLPGGLVTSYKPAMWHGAPTE 134

Query: 393 MLYTDVSE 416
+++T V+E
Sbjct: 135 VIHTTVAE 142


>tr|A3AEA6|A3AEA6_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_009128 PE=4 SV=1
Length = 399

Score = 45.1 bits (105), Expect = 0.003
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 4/155 (2%)
Frame = +3

Query: 135 PFGLQSRPSRICLQVDCSARGLEEVKPLQAPKLQDKFGSENLQFS--DVAGRTVAELKLA 308
P L +RPS + + +A KP L++ FG + L+F+ G AEL +
Sbjct: 8 PLHLPTRPSAV--KASAAATAAAAPKP---QSLEESFGRKGLRFAADPATGAPTAELSVR 62

Query: 309 SGTSVRLLLAEARITSYSCRLW--HGSCEEMLYTDVSESSVNGIDRSVHGATPQQFFVTG 482
+G+S++L LA+ +TSY +++ C E+L+T + + V A + +
Sbjct: 63 NGSSLQLRLADGLVTSYRPKVYWKDDGCREVLHTVAGAGAGGEVKGGVGLALSE--VSSS 120

Query: 483 GMAPSLAHSLDPHISLCNNNWSVQSVAVDPKEHVQ 587
G A SL L + WSV D + VQ
Sbjct: 121 GAAESL---------LVGSEWSVVDADSDSYDAVQ 146