DK955530
Clone id TST39A01NGRL0023_F13
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_F13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
AAGCTCTTCAGAATTTCAGATCCCCCTGGAAATGGAAGGCCAGAACGAACGTAGAGAGTG
CTCGATGACAGAGTCATGGATTTTCTCCATCATAGCATGCGCAATTGCCGTCCCATATGG
CATTCGAAAGAAGTCGTTGGCACCCCTTGTCTTCTTTGGTTCCACGGGCGCCATGCTGGA
TATCATCATGAGTGTCAGCGCCTGTGAAAGAGAGTTTCAGGAGAGACAGCAGGAACTTCT
GCTTCAAAAGCAGCAGCAACAGCAGCAGCAGGACTCGCCTCCCCGTGCATTTGTTGATGA
GGACGCCATTGAATGAGCCCTCTGACATCGTGCAGACGTCATCCTACATGAAGTGCCATG
ATTTTGTATTGTGGCTTTTTCTCCCTATCGACCATTGTGTTCTTGTTCGGTATCGATGTT
GCTGATGAGGTGCAAAACAGTCAGCATTGTATGGGTTTTACCGAGTGTCAATATTTGTGA
ATGGTGCTGGTGTTGTCTTTCAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q4KMP7
Definition sp|Q4KMP7|TB10B_HUMAN TBC1 domain family member 10B OS=Homo sapiens
Align length 52
Score (bit) 30.8
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955530|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_F13, 5'
(501 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4KMP7|TB10B_HUMAN TBC1 domain family member 10B OS=Homo sapi... 31 3.7
sp|Q8BHL3|TB10B_MOUSE TBC1 domain family member 10B OS=Mus muscu... 30 8.2

>sp|Q4KMP7|TB10B_HUMAN TBC1 domain family member 10B OS=Homo sapiens
GN=TBC1D10B PE=1 SV=2
Length = 533

Score = 30.8 bits (68), Expect = 3.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2

Query: 437 FCTSSATSIPNKNTMVDREKKPQYKIMALHVG*RLHDVRGLIQWRPHQQMHG 282
F T++P +++RE Q K + + RG +Q+RP +++HG
Sbjct: 320 FLVHEVTNLPVTEALIERENAAQLK--------KWRETRGELQYRPSRRLHG 363


>sp|Q8BHL3|TB10B_MOUSE TBC1 domain family member 10B OS=Mus musculus
GN=Tbc1d10b PE=1 SV=1
Length = 537

Score = 29.6 bits (65), Expect = 8.2
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2

Query: 437 FCTSSATSIPNKNTMVDREKKPQYKIMALHVG*RLHDVRGLIQWRPHQQMHG 282
F T++P ++RE Q K + + RG +Q+RP +++HG
Sbjct: 320 FLVHEVTNLPVTEAWIERENAAQLK--------KWRETRGELQYRPSRRLHG 363


tr_hit_id A9TYX9
Definition tr|A9TYX9|A9TYX9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 44
Score (bit) 71.2
E-value 2.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955530|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_F13, 5'
(501 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TYX9|A9TYX9_PHYPA Predicted protein (Fragment) OS=Physcomit... 71 2e-11
tr|Q2QQW1|Q2QQW1_ORYSJ Os12g0481200 protein OS=Oryza sativa subs... 70 7e-11
tr|B8BPN0|B8BPN0_ORYSI Putative uncharacterized protein OS=Oryza... 70 7e-11
tr|A7PC42|A7PC42_VITVI Chromosome chr2 scaffold_11, whole genome... 70 7e-11
tr|B6T8E1|B6T8E1_MAIZE Putative uncharacterized protein OS=Zea m... 68 2e-10
tr|A5BZQ3|A5BZQ3_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10
tr|Q84VW7|Q84VW7_ARATH At1g21930 (Putative uncharacterized prote... 67 6e-10
tr|A3CHC0|A3CHC0_ORYSJ Putative uncharacterized protein OS=Oryza... 67 6e-10
tr|Q9M2N7|Q9M2N7_ARATH Putative uncharacterized protein T27B3.20... 66 8e-10
tr|A9RB34|A9RB34_PHYPA Predicted protein (Fragment) OS=Physcomit... 55 1e-06
tr|Q1L124|Q1L124_9MOLU DNA-directed RNA polymerase (Fragment) OS... 33 9.9

>tr|A9TYX9|A9TYX9_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_9463 PE=4 SV=1
Length = 53

Score = 71.2 bits (173), Expect = 2e-11
Identities = 32/44 (72%), Positives = 38/44 (86%)
Frame = +2

Query: 74 SWIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 205
SWIFS++ AIA+P GI+KKSLAPLVFFGSTGAMLDI+ S + C
Sbjct: 4 SWIFSLLGAAIAIPVGIKKKSLAPLVFFGSTGAMLDIVQSFADC 47


>tr|Q2QQW1|Q2QQW1_ORYSJ Os12g0481200 protein OS=Oryza sativa subsp.
japonica GN=Os12g0481200 PE=4 SV=2
Length = 92

Score = 69.7 bits (169), Expect = 7e-11
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
Frame = +2

Query: 38 GQNERRECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 205
G+ + +C+++ + W FS+ +A+P GI+KKSLAPLVFFG+TG MLDIIM +S C
Sbjct: 7 GEKQLEDCTVSNALGTWFFSVAGALVAIPVGIKKKSLAPLVFFGTTGTMLDIIMGISQC 65


>tr|B8BPN0|B8BPN0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_38329 PE=4 SV=1
Length = 92

Score = 69.7 bits (169), Expect = 7e-11
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
Frame = +2

Query: 38 GQNERRECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 205
G+ + +C+++ + W FS+ +A+P GI+KKSLAPLVFFG+TG MLDIIM +S C
Sbjct: 7 GEKQLEDCTVSNALGTWFFSVAGALVAIPVGIKKKSLAPLVFFGTTGTMLDIIMGISQC 65


>tr|A7PC42|A7PC42_VITVI Chromosome chr2 scaffold_11, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00015702001
PE=4 SV=1
Length = 85

Score = 69.7 bits (169), Expect = 7e-11
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 3/60 (5%)
Frame = +2

Query: 35 EGQNERRECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 205
E + ECS+ + W+FS+ +A+P GI++KSLAPLVFFG+TG M+DIIM +SAC
Sbjct: 5 ETVKQLEECSVANALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMIDIIMGISAC 64


>tr|B6T8E1|B6T8E1_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 101

Score = 68.2 bits (165), Expect = 2e-10
Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Frame = +2

Query: 38 GQNERRECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 205
G+ + +C++ + W FS+ +A+P GI+KKSLAPLVFFG+TG MLDIIM ++ C
Sbjct: 7 GEKQLEDCTVANALGTWFFSVAGALVAIPVGIKKKSLAPLVFFGTTGTMLDIIMGITQC 65


>tr|A5BZQ3|A5BZQ3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_028372 PE=4 SV=1
Length = 91

Score = 68.2 bits (165), Expect = 2e-10
Identities = 29/51 (56%), Positives = 41/51 (80%)
Frame = +2

Query: 53 RECSMTESWIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 205
R C++ +W+FS+ +A+P GI++KSLAPLVFFG+TG M+DIIM +SAC
Sbjct: 21 RPCALG-TWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMIDIIMGISAC 70


>tr|Q84VW7|Q84VW7_ARATH At1g21930 (Putative uncharacterized protein
At1g21930) OS=Arabidopsis thaliana GN=At1g21930 PE=4
SV=1
Length = 98

Score = 66.6 bits (161), Expect = 6e-10
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Frame = +2

Query: 35 EGQNERRECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 205
E EC+++ + W+FS++ +A+P GI++KSL PLVFFG+TG MLDII+ VS C
Sbjct: 5 ENVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIGVSQC 64


>tr|A3CHC0|A3CHC0_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_034692 PE=4 SV=1
Length = 96

Score = 66.6 bits (161), Expect = 6e-10
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +2

Query: 74 SWIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 205
+W FS+ +A+P GI+KKSLAPLVFFG+TG MLDIIM +S C
Sbjct: 26 TWFFSVAGALVAIPVGIKKKSLAPLVFFGTTGTMLDIIMGISQC 69


>tr|Q9M2N7|Q9M2N7_ARATH Putative uncharacterized protein T27B3.20
OS=Arabidopsis thaliana GN=At3g42150 PE=4 SV=1
Length = 100

Score = 66.2 bits (160), Expect = 8e-10
Identities = 28/53 (52%), Positives = 41/53 (77%), Gaps = 3/53 (5%)
Frame = +2

Query: 56 ECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 205
EC+++ + W+FS++ +A+P GI++KSL PLVFFG+TG MLDII+ VS C
Sbjct: 12 ECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIGVSQC 64


>tr|A9RB34|A9RB34_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_29420 PE=4 SV=1
Length = 52

Score = 55.5 bits (132), Expect = 1e-06
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +2

Query: 77 WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMS 193
WI ++ AIA+P GI+KKSLAPLV GS GAMLDI+ S
Sbjct: 1 WISLVLVAAIAIPVGIKKKSLAPLVLLGSNGAMLDIVQS 39