DK955541
Clone id TST39A01NGRL0023_F24
Library
Length 600
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_F24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GCAAGCCTGCCTTCGCGCTCTCTGCGTGCGTCTCTTTTCCCGGTGTGGAGCGTCCAACGC
AGATCTTCTCTTTCTGTCGCGACAAATTGTCAATCCTGTGATTGTCTACAGGTTTTCTTG
CTTAGCAAGTGATTGGGGTGATCTTTTGAGCCATTAATCAATTGTTGCCAGTGGGACTAG
TTGTAGCATTCCTTTCAGCGAGGCATATGCTTGTGGCAAGAGTGGAAATATGTATTGAGG
CTGCACTCTAACAAAACTATCTAAAGCAACAAGGTTTTACCATGGAGGGCGTCCCCTTGG
CTTTGCAAGCTGGTGCTAGTGCAGGTCCAGGTTCTGCTGCAGCAACATCACGTGTACCGC
CTGGTTTAATTCCTAGTTCCTCTTCCAGATCTGTCACCGAAACTGTAAATGGATCTCATG
ATTTCAAAATTGGTGGCTACTCTCTTGCTAAAGGCATGGGAATAGGGAAATACATTACAA
GTGAAACATTTAAAGTTGGAGGCTATGAGTGGGCCGTGTACTTTTATCCTGATGGCAAGA
ATCTTGAGGACAATTCCTTGTATGTCTCTGTCTTCATTGCTCTGGCCAGCGAGGGGACAG
■■Homology search results ■■ -
sp_hit_id Q84WU2
Definition sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
Align length 31
Score (bit) 37.0
E-value 0.076
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955541|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_F24, 5'
(600 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 O... 37 0.076
sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 O... 37 0.076
sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor OS=Stap... 32 2.5
sp|Q2K3X0|QUEC_RHIEC Queuosine biosynthesis protein queC OS=Rhiz... 32 3.2
sp|Q4ULU3|COX2_RICFE Probable cytochrome c oxidase subunit 2 OS=... 32 3.2
sp|Q92I65|COX2_RICCN Probable cytochrome c oxidase subunit 2 OS=... 32 3.2
sp|Q64414|APT_GERCA Adenine phosphoribosyltransferase OS=Gerbill... 31 4.2
sp|A6LKP0|GCP_THEM4 Probable O-sialoglycoprotein endopeptidase O... 31 5.5
sp|Q9ZDC6|COX2_RICPR Probable cytochrome c oxidase subunit 2 OS=... 30 7.1

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13
OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1
Length = 1115

Score = 37.0 bits (84), Expect = 0.076
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3

Query: 480 SETFKVGGYEWAVYFYPDGKNLEDNSLYVSV 572
S+ F VGGY+W + +P G N++ S+Y+ V
Sbjct: 73 SDVFVVGGYKWRILIFPKGNNVDHLSMYLDV 103


>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12
OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2
Length = 1116

Score = 37.0 bits (84), Expect = 0.076
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3

Query: 480 SETFKVGGYEWAVYFYPDGKNLEDNSLYVSV 572
S+ F VGGY+W + +P G N++ S+Y+ V
Sbjct: 74 SDVFVVGGYKWRILIFPKGNNVDHLSMYLDV 104


>sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=mfd PE=3 SV=1
Length = 1170

Score = 32.0 bits (71), Expect = 2.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3

Query: 399 ETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGG 503
E + D K+G Y + G+G+Y+ ET +VGG
Sbjct: 489 EKIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGG 523


>sp|Q2K3X0|QUEC_RHIEC Queuosine biosynthesis protein queC
OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=queC
PE=3 SV=1
Length = 236

Score = 31.6 bits (70), Expect = 3.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2

Query: 158 SIVASGTSCSIPFSEAYACGKSGNMY*GCTLTKLSKATRFYHGG 289
+IVA GT PF+E ++C K G+++ G T + + F+ G
Sbjct: 167 AIVADGTRHGTPFAETWSCYKGGSLHCGRCGTCVERREAFHLAG 210


>sp|Q4ULU3|COX2_RICFE Probable cytochrome c oxidase subunit 2
OS=Rickettsia felis GN=ctaC PE=3 SV=1
Length = 315

Score = 31.6 bits (70), Expect = 3.2
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3

Query: 477 TSETFKVGGYEWAV-YFYPDGKNLEDNSLYVS 569
T T KV GY+W Y YPD NLE +S+ +S
Sbjct: 167 TDLTIKVVGYQWYWHYIYPDHDNLEFDSVMIS 198


>sp|Q92I65|COX2_RICCN Probable cytochrome c oxidase subunit 2
OS=Rickettsia conorii GN=ctaC PE=3 SV=1
Length = 315

Score = 31.6 bits (70), Expect = 3.2
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3

Query: 477 TSETFKVGGYEWAV-YFYPDGKNLEDNSLYVS 569
T T KV GY+W Y YPD NLE +S+ +S
Sbjct: 167 TDLTIKVVGYQWYWHYIYPDHDNLEFDSVMIS 198


>sp|Q64414|APT_GERCA Adenine phosphoribosyltransferase OS=Gerbillus
campestris GN=APRT PE=3 SV=1
Length = 180

Score = 31.2 bits (69), Expect = 4.2
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -3

Query: 469 FPIPMPLARE*PPILKS*DPFTVSVTDLEEELGIKPGGTRD 347
FPIP L R+ P+LK D F S+ L L K GG D
Sbjct: 19 FPIPGVLFRDISPLLKDPDSFRASIRLLANHLKSKHGGKID 59


>sp|A6LKP0|GCP_THEM4 Probable O-sialoglycoprotein endopeptidase
OS=Thermosipho melanesiensis (strain BI429 / DSM 12029)
GN=gcp PE=3 SV=1
Length = 325

Score = 30.8 bits (68), Expect = 5.5
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +3

Query: 351 RVPPGLIPSSSSRSVTE-----TVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWA 515
++P + +S R+VT+ T + D KI LA G+ KY+ ++ ++ E
Sbjct: 225 KIPKEDVAASFQRAVTDILLHKTFKAAKDKKINTVVLAGGVAANKYLRTKALEISKKEGI 284

Query: 516 VYFYPDGKNLEDNSLYVSV 572
+ P + DN+ +++
Sbjct: 285 ILLIPPIEFCTDNAAMIAI 303


>sp|Q9ZDC6|COX2_RICPR Probable cytochrome c oxidase subunit 2
OS=Rickettsia prowazekii GN=ctaC PE=3 SV=1
Length = 313

Score = 30.4 bits (67), Expect = 7.1
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3

Query: 486 TFKVGGYEWAV-YFYPDGKNLEDNSLYVS 569
T KV GY+W Y YPD NLE +S+ +S
Sbjct: 168 TIKVVGYQWYWHYIYPDYDNLEFDSVMIS 196


tr_hit_id A9NUQ7
Definition tr|A9NUQ7|A9NUQ7_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 74
Score (bit) 132.0
E-value 2.0e-29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955541|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_F24, 5'
(600 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NUQ7|A9NUQ7_PICSI Putative uncharacterized protein OS=Picea... 132 2e-29
tr|A9TWM0|A9TWM0_PHYPA Predicted protein OS=Physcomitrella paten... 131 3e-29
tr|A9TCQ8|A9TCQ8_PHYPA Predicted protein OS=Physcomitrella paten... 131 3e-29
tr|Q8LI88|Q8LI88_ORYSJ Os07g0167200 protein OS=Oryza sativa subs... 130 4e-29
tr|B8B7L7|B8B7L7_ORYSI Putative uncharacterized protein OS=Oryza... 130 4e-29
tr|A3BGX7|A3BGX7_ORYSJ Putative uncharacterized protein OS=Oryza... 130 4e-29
tr|A3ANI1|A3ANI1_ORYSJ Putative uncharacterized protein OS=Oryza... 130 4e-29
tr|Q2HVB4|Q2HVB4_MEDTR BTB/POZ; MATH OS=Medicago truncatula GN=M... 130 6e-29
tr|B6TV51|B6TV51_MAIZE Speckle-type POZ protein OS=Zea mays PE=2... 130 6e-29
tr|A9T0Y5|A9T0Y5_PHYPA Predicted protein OS=Physcomitrella paten... 130 6e-29
tr|Q852K1|Q852K1_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 129 2e-28
tr|Q10C73|Q10C73_ORYSJ Os03g0792500 protein OS=Oryza sativa subs... 129 2e-28
tr|A2XMT3|A2XMT3_ORYSI Putative uncharacterized protein OS=Oryza... 129 2e-28
tr|B4FQ32|B4FQ32_MAIZE Putative uncharacterized protein OS=Zea m... 128 3e-28
tr|A7QRJ6|A7QRJ6_VITVI Chromosome chr8 scaffold_150, whole genom... 128 3e-28
tr|B6TJ67|B6TJ67_MAIZE Speckle-type POZ protein OS=Zea mays PE=2... 127 4e-28
tr|A7NWE2|A7NWE2_VITVI Chromosome chr5 scaffold_2, whole genome ... 126 8e-28
tr|Q9SRV1|Q9SRV1_ARATH F20H23.23 protein (AT3g03740/F20H23_23) O... 125 2e-27
tr|Q8LGI9|Q8LGI9_ARATH Putative uncharacterized protein OS=Arabi... 125 2e-27
tr|B4FTH6|B4FTH6_MAIZE Putative uncharacterized protein OS=Zea m... 125 2e-27
tr|A7PG96|A7PG96_VITVI Chromosome chr6 scaffold_15, whole genome... 125 2e-27
tr|Q94B33|Q94B33_ARATH Putative uncharacterized protein OS=Arabi... 124 3e-27
tr|Q1EBV6|Q1EBV6_ARATH At5g21010 OS=Arabidopsis thaliana PE=2 SV=1 124 3e-27
tr|Q8LFW4|Q8LFW4_ARATH Putative uncharacterized protein OS=Arabi... 124 4e-27
tr|Q9M8J9|Q9M8J9_ARATH F28L1.13 protein OS=Arabidopsis thaliana ... 122 2e-26
tr|Q3EBB8|Q3EBB8_ARATH Uncharacterized protein At3g06190.2 OS=Ar... 122 2e-26
tr|Q852K2|Q852K2_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 121 4e-26
tr|A2XMT4|A2XMT4_ORYSI Putative uncharacterized protein OS=Oryza... 121 4e-26
tr|B6TPG4|B6TPG4_MAIZE Speckle-type POZ protein OS=Zea mays PE=2... 120 6e-26
tr|B4F9H2|B4F9H2_MAIZE Putative uncharacterized protein OS=Zea m... 120 6e-26

>tr|A9NUQ7|A9NUQ7_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 411

Score = 132 bits (331), Expect = 2e-29
Identities = 62/74 (83%), Positives = 68/74 (91%)
Frame = +3

Query: 378 SSSRSVTETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWAVYFYPDGKNLEDNS 557
SSSRSVT TVNGSH+F I GYSLAKGMG+G++I SETF VGGY+WA+YFYPDGKN EDNS
Sbjct: 26 SSSRSVTNTVNGSHNFVIQGYSLAKGMGVGRHIASETFTVGGYQWAIYFYPDGKNAEDNS 85

Query: 558 LYVSVFIALASEGT 599
LYVSVFIALASEGT
Sbjct: 86 LYVSVFIALASEGT 99


>tr|A9TWM0|A9TWM0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_226178 PE=4 SV=1
Length = 401

Score = 131 bits (330), Expect = 3e-29
Identities = 61/75 (81%), Positives = 67/75 (89%)
Frame = +3

Query: 375 SSSSRSVTETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWAVYFYPDGKNLEDN 554
++ SR VTETVNGSH F I GYSLAKGMG+GKYI SE+F VGGY+WA+YFYPDGKN EDN
Sbjct: 15 NTRSRCVTETVNGSHHFTINGYSLAKGMGVGKYIASESFSVGGYQWAIYFYPDGKNAEDN 74

Query: 555 SLYVSVFIALASEGT 599
SLYVSVFIALASEGT
Sbjct: 75 SLYVSVFIALASEGT 89


>tr|A9TCQ8|A9TCQ8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_143618 PE=4 SV=1
Length = 396

Score = 131 bits (330), Expect = 3e-29
Identities = 61/75 (81%), Positives = 67/75 (89%)
Frame = +3

Query: 375 SSSSRSVTETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWAVYFYPDGKNLEDN 554
++ SR VTETVNGSH F I GYSLAKGMG+GKYI SE+F VGGY+WA+YFYPDGKN EDN
Sbjct: 10 NTRSRCVTETVNGSHHFTINGYSLAKGMGVGKYIASESFSVGGYQWAIYFYPDGKNAEDN 69

Query: 555 SLYVSVFIALASEGT 599
SLYVSVFIALASEGT
Sbjct: 70 SLYVSVFIALASEGT 84


>tr|Q8LI88|Q8LI88_ORYSJ Os07g0167200 protein OS=Oryza sativa subsp.
japonica GN=OJ1641_C04.126 PE=4 SV=1
Length = 424

Score = 130 bits (328), Expect = 4e-29
Identities = 63/74 (85%), Positives = 67/74 (90%)
Frame = +3

Query: 378 SSSRSVTETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWAVYFYPDGKNLEDNS 557
+SSRSVTETVNGSH F I GYSLAKGMG+GK+I SETF VGGY+WAVYFYPDGKN EDNS
Sbjct: 32 TSSRSVTETVNGSHRFVIQGYSLAKGMGVGKHIASETFSVGGYQWAVYFYPDGKNPEDNS 91

Query: 558 LYVSVFIALASEGT 599
YVSVFIALASEGT
Sbjct: 92 AYVSVFIALASEGT 105


>tr|B8B7L7|B8B7L7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_25033 PE=4 SV=1
Length = 424

Score = 130 bits (328), Expect = 4e-29
Identities = 63/74 (85%), Positives = 67/74 (90%)
Frame = +3

Query: 378 SSSRSVTETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWAVYFYPDGKNLEDNS 557
+SSRSVTETVNGSH F I GYSLAKGMG+GK+I SETF VGGY+WAVYFYPDGKN EDNS
Sbjct: 32 TSSRSVTETVNGSHRFVIQGYSLAKGMGVGKHIASETFSVGGYQWAVYFYPDGKNPEDNS 91

Query: 558 LYVSVFIALASEGT 599
YVSVFIALASEGT
Sbjct: 92 AYVSVFIALASEGT 105


>tr|A3BGX7|A3BGX7_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_022299 PE=4 SV=1
Length = 437

Score = 130 bits (328), Expect = 4e-29
Identities = 63/74 (85%), Positives = 67/74 (90%)
Frame = +3

Query: 378 SSSRSVTETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWAVYFYPDGKNLEDNS 557
+SSRSVTETVNGSH F I GYSLAKGMG+GK+I SETF VGGY+WAVYFYPDGKN EDNS
Sbjct: 32 TSSRSVTETVNGSHRFVIQGYSLAKGMGVGKHIASETFSVGGYQWAVYFYPDGKNPEDNS 91

Query: 558 LYVSVFIALASEGT 599
YVSVFIALASEGT
Sbjct: 92 AYVSVFIALASEGT 105


>tr|A3ANI1|A3ANI1_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_012353 PE=4 SV=1
Length = 154

Score = 130 bits (328), Expect = 4e-29
Identities = 63/74 (85%), Positives = 67/74 (90%)
Frame = +3

Query: 378 SSSRSVTETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWAVYFYPDGKNLEDNS 557
+SSRSVT+TVNGSH F I GYSLAKGMGIGKYI SETF VGGY+WA+YFYPDGKN EDNS
Sbjct: 38 TSSRSVTQTVNGSHMFVIQGYSLAKGMGIGKYIASETFTVGGYQWAIYFYPDGKNPEDNS 97

Query: 558 LYVSVFIALASEGT 599
YVSVFIALASEGT
Sbjct: 98 AYVSVFIALASEGT 111


>tr|Q2HVB4|Q2HVB4_MEDTR BTB/POZ; MATH OS=Medicago truncatula
GN=MtrDRAFT_AC148965g16v2 PE=4 SV=1
Length = 422

Score = 130 bits (327), Expect = 6e-29
Identities = 62/74 (83%), Positives = 67/74 (90%)
Frame = +3

Query: 378 SSSRSVTETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWAVYFYPDGKNLEDNS 557
+SSRSVTETVNGSH F I GYSLAKGMG+GK+I SETF VGGY+WA+YFYPDGKN EDNS
Sbjct: 8 TSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNS 67

Query: 558 LYVSVFIALASEGT 599
YVSVFIALASEGT
Sbjct: 68 AYVSVFIALASEGT 81


>tr|B6TV51|B6TV51_MAIZE Speckle-type POZ protein OS=Zea mays PE=2
SV=1
Length = 432

Score = 130 bits (327), Expect = 6e-29
Identities = 62/74 (83%), Positives = 68/74 (91%)
Frame = +3

Query: 378 SSSRSVTETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWAVYFYPDGKNLEDNS 557
+SSRSVTETVNGSH F I GYSLAKGMG+GK+I SETF VGGY+WAVYFYPDGKN EDNS
Sbjct: 39 TSSRSVTETVNGSHRFVIQGYSLAKGMGVGKHIASETFSVGGYQWAVYFYPDGKNPEDNS 98

Query: 558 LYVSVFIALASEGT 599
+YVSVFIALAS+GT
Sbjct: 99 VYVSVFIALASDGT 112


>tr|A9T0Y5|A9T0Y5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_217835 PE=4 SV=1
Length = 402

Score = 130 bits (327), Expect = 6e-29
Identities = 61/75 (81%), Positives = 67/75 (89%)
Frame = +3

Query: 375 SSSSRSVTETVNGSHDFKIGGYSLAKGMGIGKYITSETFKVGGYEWAVYFYPDGKNLEDN 554
++ SR VTETVNGSH F I GYSLAKGMG+GKYI SE+F VGGY+WA+YFYPDGKN EDN
Sbjct: 16 NTRSRCVTETVNGSHHFTINGYSLAKGMGVGKYIASESFFVGGYQWAIYFYPDGKNAEDN 75

Query: 555 SLYVSVFIALASEGT 599
SLYVSVFIALASEGT
Sbjct: 76 SLYVSVFIALASEGT 90