DK955548 |
Clone id |
TST39A01NGRL0023_G08 |
Library |
TST39 |
Length |
573 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_G08. 5' end sequence. |
Accession |
DK955548 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL411Contig1 |
Sequence |
CGAGTGTTGAACTCAAGGCGAGTGACCTGAGAGAGAAGAAATAGTTGTGCCCGTCCCTCC TCCTCCTCCGCTGGTACAGACTACAGAGATGGCGGAAGTTGAGGTAGATACGCCTATGGA GCCTTTTGGAGAGGGTTCTAGCAGCGACGCCGGCCCTGCAGCCAAACGCCCCAAGCGATT CGAGATCAAGAAATGGAACGCAGTCGCTCTTTGGGCCTGGGATATTGTTGTTGACAATTG TGCTATTTGTCGCAACCACATTATGGATTTATGTATTGAGTGCCAAGCCAATCAGGCTAG CGCTACAAGTGAGGAGTGTACTGTGGCATGGGGTGTCTGCAACCATGCATTTCACTTTCA CTGTATCAGCAGATGGCTGAAGACACGGCAAGTTTGTCCGCTAGATAATAGCGAATGGGA GTTCCAAAAGTATGGGCGTTGAGGGCATCGCCTCAAAATTAGCTAAATGGAATTGTTGCT TAGCATTGCATAGATTGGTTCTATCTCAATGTCAAGGATATTTTATAAGAATGGGACATT GTACTCCTTTTCTTAAAGCTGTATGTTAAAGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q940X7 |
Definition |
sp|Q940X7|RBX1A_ARATH RING-box protein 1a OS=Arabidopsis thaliana |
Align length |
117 |
Score (bit) |
214.0 |
E-value |
2.0e-55 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2PYP4 |
Definition |
tr|Q2PYP4|Q2PYP4_ARAHY RING-box protein OS=Arachis hypogaea |
Align length |
116 |
Score (bit) |
229.0 |
E-value |
1.0e-58 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955548|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_G08, 5' (573 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q2PYP4|Q2PYP4_ARAHY RING-box protein OS=Arachis hypogaea GN=R... 229 1e-58 tr|A0ELV2|A0ELV2_PETIN RBX1-like protein OS=Petunia integrifolia... 227 3e-58 tr|A9P251|A9P251_PICSI Putative uncharacterized protein OS=Picea... 226 9e-58 tr|A9NSB3|A9NSB3_PICSI Putative uncharacterized protein OS=Picea... 224 3e-57 tr|A9NMC5|A9NMC5_PICSI Putative uncharacterized protein OS=Picea... 223 8e-57 tr|A9SV80|A9SV80_PHYPA Predicted protein OS=Physcomitrella paten... 221 2e-56 tr|Q657Y3|Q657Y3_ORYSJ Putative ring-box protein OS=Oryza sativa... 219 6e-56 tr|Q0JRD5|Q0JRD5_ORYSJ cDNA clone:001-025-F02, full insert seque... 219 6e-56 tr|A5ARK4|A5ARK4_VITVI Putative uncharacterized protein (Chromos... 219 8e-56 tr|Q287V9|Q287V9_OLIPU Putative ring-box Roc1/Rbx1/Hrt1 protein ... 216 7e-55 tr|A9S247|A9S247_PHYPA Predicted protein OS=Physcomitrella paten... 216 9e-55 tr|Q7Y042|Q7Y042_POPTO Ring box protein OS=Populus tomentosa PE=... 215 1e-54 tr|A9P8V0|A9P8V0_POPTR Putative uncharacterized protein OS=Popul... 212 1e-53 tr|B6T6J8|B6T6J8_MAIZE RING-box protein 1a OS=Zea mays PE=2 SV=1 210 4e-53 tr|B4FV30|B4FV30_MAIZE Putative uncharacterized protein OS=Zea m... 207 4e-52 tr|B4FD56|B4FD56_MAIZE Putative uncharacterized protein OS=Zea m... 206 7e-52 tr|A7SEK8|A7SEK8_NEMVE Predicted protein OS=Nematostella vectens... 206 7e-52 tr|Q8S3S0|Q8S3S0_ORYSJ Putative ring box-1 protein (Putative RIN... 205 1e-51 tr|B5FY04|B5FY04_TAEGU Putative RBX1 protein OS=Taeniopygia gutt... 205 2e-51 tr|Q498D8|Q498D8_RAT Ring-box 1 OS=Rattus norvegicus GN=Rbx1 PE=... 205 2e-51 tr|Q2PFW7|Q2PFW7_MACFA Putative uncharacterized protein OS=Macac... 205 2e-51 tr|Q2HJI9|Q2HJI9_BOVIN Ring-box 1 OS=Bos taurus GN=RBX1 PE=4 SV=1 205 2e-51 tr|B2RDY1|B2RDY1_HUMAN cDNA, FLJ96824, Homo sapiens ring-box 1 (... 205 2e-51 tr|A7E405|A7E405_SCLS1 RING-box protein 1 OS=Sclerotinia sclerot... 204 2e-51 tr|Q0UGK9|Q0UGK9_PHANO Putative uncharacterized protein OS=Phaeo... 203 6e-51 tr|Q642J6|Q642J6_DANRE Rbx1 protein (Fragment) OS=Danio rerio GN... 202 8e-51 tr|Q32Q48|Q32Q48_DANRE Rbx1 protein (Fragment) OS=Danio rerio GN... 202 8e-51 tr|A4FUL3|A4FUL3_DANRE Rbx1 protein OS=Danio rerio GN=rbx1 PE=4 ... 202 8e-51 tr|A2VCY6|A2VCY6_DANRE Rbx1 protein (Fragment) OS=Danio rerio GN... 202 8e-51 tr|B4PX22|B4PX22_DROYA GE16630 OS=Drosophila yakuba GN=GE16630 P... 202 8e-51
>tr|Q2PYP4|Q2PYP4_ARAHY RING-box protein OS=Arachis hypogaea GN=RBX1a PE=4 SV=1 Length = 116
Score = 229 bits (583), Expect = 1e-58 Identities = 104/116 (89%), Positives = 109/116 (93%) Frame = +2
Query: 89 MAEVEVDTPMEPFGEGSSSDAGPAAKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 268 MA ++ D PM P GE SSS AGP++K+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD Sbjct: 1 MATLDSDVPMVPAGEPSSS-AGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 59
Query: 269 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 436 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG Sbjct: 60 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 115
>tr|A0ELV2|A0ELV2_PETIN RBX1-like protein OS=Petunia integrifolia subsp. inflata GN=RBX1 PE=4 SV=1 Length = 116
Score = 227 bits (579), Expect = 3e-58 Identities = 101/116 (87%), Positives = 107/116 (92%) Frame = +2
Query: 89 MAEVEVDTPMEPFGEGSSSDAGPAAKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 268 MA ++D PM P GEGS+ GP+ K+PKRFEIKKWNAV+LWAWDIVVDNCAICRNHIMD Sbjct: 1 MASPDIDVPMVPAGEGSTG-VGPSTKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMD 59
Query: 269 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 436 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG Sbjct: 60 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 115
>tr|A9P251|A9P251_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 119
Score = 226 bits (575), Expect = 9e-58 Identities = 104/118 (88%), Positives = 108/118 (91%), Gaps = 2/118 (1%) Frame = +2
Query: 89 MAEVEVDTPMEPFGEGSSSDAGPA--AKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHI 262 MA +VD EP GEGSSS AGP+ +K+ KRFEIKKWNAVALWAWDIVVDNCAICRNHI Sbjct: 1 MASTDVDMIPEPTGEGSSSQAGPSTSSKKIKRFEIKKWNAVALWAWDIVVDNCAICRNHI 60
Query: 263 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 436 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG Sbjct: 61 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 118
>tr|A9NSB3|A9NSB3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 119
Score = 224 bits (571), Expect = 3e-57 Identities = 103/118 (87%), Positives = 108/118 (91%), Gaps = 2/118 (1%) Frame = +2
Query: 89 MAEVEVDTPMEPFGEGSSSDAGPA--AKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHI 262 MA +V+ EP GEGSSS AGP+ +K+ KRFEIKKWNAVALWAWDIVVDNCAICRNHI Sbjct: 1 MASTDVEMIPEPTGEGSSSQAGPSTSSKKIKRFEIKKWNAVALWAWDIVVDNCAICRNHI 60
Query: 263 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 436 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG Sbjct: 61 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 118
>tr|A9NMC5|A9NMC5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 119
Score = 223 bits (567), Expect = 8e-57 Identities = 101/118 (85%), Positives = 106/118 (89%), Gaps = 2/118 (1%) Frame = +2
Query: 89 MAEVEVDTPMEPFGEGSSSDAGPAA--KRPKRFEIKKWNAVALWAWDIVVDNCAICRNHI 262 MA ++D P GEGSS+ AGP+ K+ KRFEIKKWNAVALWAWDIVVDNCAICRNHI Sbjct: 1 MASTDIDMTPVPSGEGSSAQAGPSTSTKKAKRFEIKKWNAVALWAWDIVVDNCAICRNHI 60
Query: 263 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 436 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG Sbjct: 61 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 118
>tr|A9SV80|A9SV80_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_216076 PE=4 SV=1 Length = 120
Score = 221 bits (564), Expect = 2e-56 Identities = 101/120 (84%), Positives = 106/120 (88%), Gaps = 3/120 (2%) Frame = +2
Query: 89 MAEVEVDTPMEPFGEGSS---SDAGPAAKRPKRFEIKKWNAVALWAWDIVVDNCAICRNH 259 MA ++ + P GEGSS S + +KRPKRFEIKKWNAVALWAWDIVVDNCAICRNH Sbjct: 1 MAAIDTEMATGPTGEGSSAGVSSSSAVSKRPKRFEIKKWNAVALWAWDIVVDNCAICRNH 60
Query: 260 IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGR 439 IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGR Sbjct: 61 IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGR 120
>tr|Q657Y3|Q657Y3_ORYSJ Putative ring-box protein OS=Oryza sativa subsp. japonica GN=P0005A05.23 PE=4 SV=1 Length = 123
Score = 219 bits (559), Expect = 6e-56 Identities = 101/121 (83%), Positives = 108/121 (89%), Gaps = 7/121 (5%) Frame = +2
Query: 95 EVEVDTPMEPF------GEGSSSDAGPAAKRP-KRFEIKKWNAVALWAWDIVVDNCAICR 253 E +++ P P GEGSSS AGP++++P KRFEIKKWNAVALWAWDIVVDNCAICR Sbjct: 2 ETDINAPPPPAPAPAGAGEGSSSAAGPSSRKPNKRFEIKKWNAVALWAWDIVVDNCAICR 61
Query: 254 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 433 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY Sbjct: 62 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 121
Query: 434 G 436 G Sbjct: 122 G 122
>tr|Q0JRD5|Q0JRD5_ORYSJ cDNA clone:001-025-F02, full insert sequence OS=Oryza sativa subsp. japonica GN=Os01g0106800 PE=2 SV=1 Length = 126
Score = 219 bits (559), Expect = 6e-56 Identities = 101/121 (83%), Positives = 108/121 (89%), Gaps = 7/121 (5%) Frame = +2
Query: 95 EVEVDTPMEPF------GEGSSSDAGPAAKRP-KRFEIKKWNAVALWAWDIVVDNCAICR 253 E +++ P P GEGSSS AGP++++P KRFEIKKWNAVALWAWDIVVDNCAICR Sbjct: 5 ETDINAPPPPAPAPAGAGEGSSSAAGPSSRKPNKRFEIKKWNAVALWAWDIVVDNCAICR 64
Query: 254 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 433 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY Sbjct: 65 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 124
Query: 434 G 436 G Sbjct: 125 G 125
>tr|A5ARK4|A5ARK4_VITVI Putative uncharacterized protein (Chromosome chr11 scaffold_13, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00016431001 PE=4 SV=1 Length = 120
Score = 219 bits (558), Expect = 8e-56 Identities = 102/120 (85%), Positives = 107/120 (89%), Gaps = 4/120 (3%) Frame = +2
Query: 89 MAEVEVDTPMEPFGEGSSSDAGPAA----KRPKRFEIKKWNAVALWAWDIVVDNCAICRN 256 MA ++ D M P GE S S AGP++ K+PKRFEIKKWNAVALWAWDIVVDNCAICRN Sbjct: 1 MASLDSDVTMVPVGEPSGS-AGPSSSSSCKKPKRFEIKKWNAVALWAWDIVVDNCAICRN 59
Query: 257 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 436 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG Sbjct: 60 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 119
>tr|Q287V9|Q287V9_OLIPU Putative ring-box Roc1/Rbx1/Hrt1 protein OS=Olimarabidopsis pumila GN=Op_42830 PE=4 SV=1 Length = 115
Score = 216 bits (550), Expect = 7e-55 Identities = 99/116 (85%), Positives = 104/116 (89%) Frame = +2
Query: 89 MAEVEVDTPMEPFGEGSSSDAGPAAKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 268 MA ++ D PM P GE SSS +K+ KRFEIKKW+AVALWAWDIVVDNCAICRNHIMD Sbjct: 1 MASLDSDVPMIPAGEASSSTV--PSKKVKRFEIKKWSAVALWAWDIVVDNCAICRNHIMD 58
Query: 269 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 436 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG Sbjct: 59 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 114
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