DK955550
Clone id TST39A01NGRL0023_G10
Library
Length 351
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_G10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CAGGCGCTTTTCAAAGATTCAATTCTCCTCGTCCCCTCTGCGAGTCTATTGTACAATTCA
ACAGAAACCGGTTGCGCAAGAGAATTCCCTCATTTTACAGGAATACTAAAGACTTTCCAA
ACAGATTGGAGCTCAAGGTTGATAGTTTTTTTCTATCAAAGGAATCTCCCGTTGCCGTTG
TCATTACAGCAATAGGCAGTTCATTTTCCGTCCTTGGTTCTTGAAGCCATGAATAGGGAA
GCACCACCTACAGTGAAGTGTGGAAGATGAACAAGGCCGCTTTGCAGCAGAGGCTGGTCT
TGATACTTTTGTAAACAACTGTCAAACTAAAGAGAGTGAGGACTTTCCTAG
■■Homology search results ■■ -
sp_hit_id Q942X8
Definition sp|Q942X8|HAK2_ORYSJ Probable potassium transporter 2 OS=Oryza sativa subsp. japonica
Align length 52
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955550|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_G10, 5'
(351 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q942X8|HAK2_ORYSJ Probable potassium transporter 2 OS=Oryza s... 31 2.2
sp|Q9LD18|POT4_ARATH Potassium transporter 4 OS=Arabidopsis thal... 30 3.7
sp|Q1X880|POLG_YEFVU Genome polyprotein OS=Yellow fever virus (i... 30 3.7
sp|Q9YRV3|POLG_YEFVT Genome polyprotein OS=Yellow fever virus (s... 30 3.7
sp|Q1X881|POLG_YEFVN Genome polyprotein OS=Yellow fever virus (i... 30 3.7
sp|Q98803|POLG_YEFVI Genome polyprotein OS=Yellow fever virus (i... 30 3.7
sp|Q89277|POLG_YEFVF Genome polyprotein OS=Yellow fever virus (s... 30 3.7
sp|Q074N0|POLG_YEFVE Genome polyprotein OS=Yellow fever virus (i... 30 3.7
sp|Q6J3P1|POLG_YEFVC Genome polyprotein OS=Yellow fever virus (i... 30 3.7
sp|Q6DV88|POLG_YEFVA Genome polyprotein OS=Yellow fever virus (s... 30 3.7
sp|P03314|POLG_YEFV1 Genome polyprotein OS=Yellow fever virus (s... 30 3.7
sp|Q8H3P9|HAK7_ORYSJ Potassium transporter 7 OS=Oryza sativa sub... 29 8.2
sp|Q3V544|RPOC2_ACOCL DNA-directed RNA polymerase subunit beta''... 29 8.2

>sp|Q942X8|HAK2_ORYSJ Probable potassium transporter 2 OS=Oryza
sativa subsp. japonica GN=HAK2 PE=2 SV=1
Length = 783

Score = 30.8 bits (68), Expect = 2.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1

Query: 22 ILLVPSASLLYNSTETGCAREFPHFTGILKTFQTDWSSRLIVFFYQRNLPLP 177
++ VP L+Y TG F HFT L F ++VF +++P+P
Sbjct: 524 VVRVPGIGLIYTELVTGVPNIFTHFTTNLPAFH-----EVLVFLCVKSVPVP 570


>sp|Q9LD18|POT4_ARATH Potassium transporter 4 OS=Arabidopsis
thaliana GN=POT4 PE=2 SV=2
Length = 789

Score = 30.0 bits (66), Expect = 3.7
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1

Query: 22 ILLVPSASLLYNSTETGCAREFPHFTGILKTFQTDWSSRLIVFFYQRNLPLP 177
I+ VP L+Y+ TG F HF L F +++VF +++P+P
Sbjct: 526 IVRVPGIGLVYSELATGVPAIFSHFVTNLPAFH-----KVVVFVCVKSVPVP 572


>sp|Q1X880|POLG_YEFVU Genome polyprotein OS=Yellow fever virus
(isolate Uganda/A7094A4/1948) PE=3 SV=1
Length = 3412

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1

Query: 37 SASLLYNSTETGCAREFPHFTGILKTFQTD 126
SA++L +T G + EFPH G ++ QTD
Sbjct: 1798 SATILMTATPPGTSDEFPHSNGEIEDVQTD 1827


>sp|Q9YRV3|POLG_YEFVT Genome polyprotein OS=Yellow fever virus (strain
Trinidad/TRINID79A/1979) PE=3 SV=1
Length = 3411

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1

Query: 37 SASLLYNSTETGCAREFPHFTGILKTFQTD 126
SA++L +T G + EFPH G ++ QTD
Sbjct: 1798 SATILMTATPPGTSDEFPHSNGEIEDVQTD 1827


>sp|Q1X881|POLG_YEFVN Genome polyprotein OS=Yellow fever virus
(isolate Angola/14FA/1971) PE=3 SV=1
Length = 3412

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1

Query: 37 SASLLYNSTETGCAREFPHFTGILKTFQTD 126
SA++L +T G + EFPH G ++ QTD
Sbjct: 1798 SATILMTATPPGTSDEFPHSNGEIEDVQTD 1827


>sp|Q98803|POLG_YEFVI Genome polyprotein OS=Yellow fever virus
(isolate Ivory Coast/85-82H/1982) PE=3 SV=1
Length = 3411

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1

Query: 37 SASLLYNSTETGCAREFPHFTGILKTFQTD 126
SA++L +T G + EFPH G ++ QTD
Sbjct: 1798 SATILMTATPPGTSDEFPHSNGEIEDVQTD 1827


>sp|Q89277|POLG_YEFVF Genome polyprotein OS=Yellow fever virus (strain
French neurotropic vaccine FNV) PE=3 SV=2
Length = 3411

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1

Query: 37 SASLLYNSTETGCAREFPHFTGILKTFQTD 126
SA++L +T G + EFPH G ++ QTD
Sbjct: 1798 SATILMTATPPGTSDEFPHSNGEIEDVQTD 1827


>sp|Q074N0|POLG_YEFVE Genome polyprotein OS=Yellow fever virus
(isolate Ethiopia/Couma/1961) PE=1 SV=1
Length = 3412

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1

Query: 37 SASLLYNSTETGCAREFPHFTGILKTFQTD 126
SA++L +T G + EFPH G ++ QTD
Sbjct: 1798 SATILMTATPPGTSDEFPHSNGEIEDVQTD 1827


>sp|Q6J3P1|POLG_YEFVC Genome polyprotein OS=Yellow fever virus
(isolate Ivory Coast/1999) PE=1 SV=1
Length = 3411

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1

Query: 37 SASLLYNSTETGCAREFPHFTGILKTFQTD 126
SA++L +T G + EFPH G ++ QTD
Sbjct: 1798 SATILMTATPPGTSDEFPHSNGEIEDVQTD 1827


>sp|Q6DV88|POLG_YEFVA Genome polyprotein OS=Yellow fever virus (strain
Ghana/Asibi/1927) PE=3 SV=1
Length = 3411

Score = 30.0 bits (66), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1

Query: 37 SASLLYNSTETGCAREFPHFTGILKTFQTD 126
SA++L +T G + EFPH G ++ QTD
Sbjct: 1798 SATILMTATPPGTSDEFPHSNGEIEDVQTD 1827


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955550|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_G10, 5'
(351 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******