DK955555
Clone id TST39A01NGRL0023_G15
Library
Length 599
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_G15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GGTTGGCTATATAGAACTACCATCTTTCTGCTACACCCAATTGCAGACATCCCCAAACGC
CTTCATTTCCTCTCTCCCATTCTCTAGTTTCTACTCTCTTTGCCGATCCCCGTTAGCTCT
TCCTTGATCGAGATCCTTTTCGCAGAAGATCGTCAAAGAGGGCGCAACTCAAGCTTCCCA
CAGCACCCTCTTCTTCTCACGTTGAATTTTAACTACTGCTGAAGCTTTCCATTGAAGCTC
AGAACCCCTCCGCTCCGAATTCTACTCTAAGCTTTCAAATGGATTATCTTCCTCTCTAGG
GAGGCGTATGGACTCTAATGAAGAGAAGCTTCTTTTTGGATATGGTTCTTTCTTCACTGA
GGATTCCTTCTTGCTCTCAGATTATCTTCACCGGCAAGCAGAGAGAGCCAGTAATCGCCT
CTTCAGCAGCAAAAACCCTTTGTTGTTTCTGCGATCCAAGATTTTTTCATCAGACTTTGA
GCAGAAAGAGGGAGAAAAGATTCTGGATCGATGCTGCTCTCCAGTTTTAAAATCTTTGGC
TATGGGCGCCTCAGCCTTAGCCTCAGCTCAAAAAGAGAGCTCAAAGAGCTACACGGGCA
■■Homology search results ■■ -
sp_hit_id P01830
Definition sp|P01830|THY1_RAT Thy-1 membrane glycoprotein OS=Rattus norvegicus
Align length 123
Score (bit) 31.6
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955555|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_G15, 5'
(599 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P01830|THY1_RAT Thy-1 membrane glycoprotein OS=Rattus norvegi... 32 3.2
sp|P44846|OSTA_HAEIN LPS-assembly protein OS=Haemophilus influen... 30 7.1
sp|Q4QMG4|OSTA_HAEI8 LPS-assembly protein OS=Haemophilus influen... 30 7.1
sp|Q3V544|RPOC2_ACOCL DNA-directed RNA polymerase subunit beta''... 30 9.3

>sp|P01830|THY1_RAT Thy-1 membrane glycoprotein OS=Rattus norvegicus
GN=Thy1 PE=1 SV=1
Length = 161

Score = 31.6 bits (70), Expect = 3.2
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 7/123 (5%)
Frame = +3

Query: 39 NCRHPQTPSFPLSHSLVSTLFADXXXXXXXXXXXXXXXXKRAQL-------KLPTAPSSS 197
+CRH + P+ H T R L L A ++
Sbjct: 37 DCRHENNTNLPIQHEFSLTREKKKHVLSGTLGVPEHTYRSRVNLFSDRFIKVLTLANFTT 96

Query: 198 HVEF*LLLKLSIEAQNPSAPNSTLSFQMDYLPL*GGVWTLMKRSFFLDMVLSSLRIPSCS 377
E + +L + QNP++ N T++ D L GG+ L++ + +L ++L SL +
Sbjct: 97 KDEGDYMCELRVSGQNPTSSNKTINVIRDKLVKCGGISLLVQNTSWLLLLLLSLSFLQAT 156

Query: 378 QII 386
I
Sbjct: 157 DFI 159


>sp|P44846|OSTA_HAEIN LPS-assembly protein OS=Haemophilus influenzae
GN=imp PE=1 SV=1
Length = 782

Score = 30.4 bits (67), Expect = 7.1
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2

Query: 353 FTEDSFLLSDYLHRQAERASNRLFSSKNPLLFLRSKIFSSDFEQKEG 493
F DS L+ AE + N L S+K L + +K++++ +EQK+G
Sbjct: 410 FDNDSKLMPTAWRFHAEPSLNSLMSNKYGSLNIETKLYATRYEQKKG 456


>sp|Q4QMG4|OSTA_HAEI8 LPS-assembly protein OS=Haemophilus influenzae
(strain 86-028NP) GN=imp PE=3 SV=1
Length = 782

Score = 30.4 bits (67), Expect = 7.1
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2

Query: 353 FTEDSFLLSDYLHRQAERASNRLFSSKNPLLFLRSKIFSSDFEQKEG 493
F DS L+ AE + N L S+K L + +K++++ +EQK+G
Sbjct: 410 FDNDSKLMPTAWRFHAEPSLNSLMSNKYGSLNIETKLYATRYEQKKG 456


>sp|Q3V544|RPOC2_ACOCL DNA-directed RNA polymerase subunit beta''
OS=Acorus calamus GN=rpoC2 PE=3 SV=1
Length = 1386

Score = 30.0 bits (66), Expect = 9.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Frame = +2

Query: 365 SFLLSDYLHRQAERASNRLFSSKNPLLF--------LRSKIFSSDFEQKEGEKILD 508
S ++S LH+ ++ + FS + + +R K+FSSD K G++ILD
Sbjct: 487 SSIVSSSLHKDQDQTNAHSFSVERRYISDLSMTNGRVRHKLFSSDLSGKRGDRILD 542


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955555|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_G15, 5'
(599 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******