DK955556 |
Clone id |
TST39A01NGRL0023_G16 |
Library |
TST39 |
Length |
531 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_G16. 5' end sequence. |
Accession |
DK955556 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CAGTCACTTACACGCAGAGCCAGGGGAGAGAGCGGGGCTCCAAGATGCAATCAGAGGGCC ATGCCGCAGGATTTCAAAACCATAGTCAGTTTCCTCGTGTCAACATGCCTATCTATACTG AAGATTGGGAAACATTAAATGCCCTCGGCAGAGATCCCTTCAGAAGGGTATTTGTAGGGG AGACTTTACAACAGATGGCAAGTCTGCAAATTGAACACAGAATAAAAAGACAAAACTGTG GAAACAATGTGTCCCTACATCACGATTCGATATTTGGAAGCAGGGACCAGGTAGGGTCCA GTTTTTCTGTTGCAAATGGTGAGGCTGAAGGGAGAATGAGGTACCCTCCCAGGACCATGT CCCCTGGCTTTTATGGCTTGACAGGCGAAGGCAATAGAGCATTCACTGACAGAAATTTTC CACCTGCTGAAATTGGAAGCAGCAGTTCCTTTGGGTTTCAATCCCACAATGGAATTCTTT TGAGGAGTTCAGTTACAGAAAGTGAAATTGTACACTATCCAGGGAGCGACT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P12110 |
Definition |
sp|P12110|CO6A2_HUMAN Collagen alpha-2(VI) chain OS=Homo sapiens |
Align length |
45 |
Score (bit) |
32.7 |
E-value |
1.1 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955556|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_G16, 5' (531 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P12110|CO6A2_HUMAN Collagen alpha-2(VI) chain OS=Homo sapiens... 33 1.1 sp|Q9EP78|CHST7_MOUSE Carbohydrate sulfotransferase 7 OS=Mus mus... 32 2.5 sp|Q02788|CO6A2_MOUSE Collagen alpha-2(VI) chain OS=Mus musculus... 31 3.2 sp|Q6XQG8|CHST7_RAT Carbohydrate sulfotransferase 7 OS=Rattus no... 31 4.3 sp|Q8BZH4|POGZ_MOUSE Pogo transposable element with ZNF domain O... 30 5.5 sp|Q7Z3K3|POGZ_HUMAN Pogo transposable element with ZNF domain O... 30 5.5 sp|Q9R159|ADA25_MOUSE ADAM 25 OS=Mus musculus GN=Adam25 PE=2 SV=1 30 5.5 sp|O94296|YOOC_SCHPO Probable phospholipid-transporting ATPase C... 30 7.2 sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja2 OS=Mus m... 30 9.4 sp|Q28084|CO4A3_BOVIN Collagen alpha-3(IV) chain (Fragment) OS=B... 30 9.4
>sp|P12110|CO6A2_HUMAN Collagen alpha-2(VI) chain OS=Homo sapiens GN=COL6A2 PE=1 SV=4 Length = 1019
Score = 32.7 bits (73), Expect = 1.1 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +3
Query: 342 YPPRTMSPGFYG-LTGEGNRAFTDRNFPPAEIGSSSSFGFQSHNG 473 YP SPG G G+G+ R PP EIG+ S G+Q ++G Sbjct: 356 YPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSG 400
>sp|Q9EP78|CHST7_MOUSE Carbohydrate sulfotransferase 7 OS=Mus musculus GN=Chst7 PE=2 SV=1 Length = 484
Score = 31.6 bits (70), Expect = 2.5 Identities = 15/34 (44%), Positives = 23/34 (67%) Frame = +1
Query: 226 KDKTVETMCPYITIRYLEAGTR*GPVFLLQMVRL 327 +DK E+ CP +++R LEA R PV +++ VRL Sbjct: 219 EDKACESTCPPVSLRALEAECRKYPVVVIKDVRL 252
>sp|Q02788|CO6A2_MOUSE Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=2 SV=3 Length = 1034
Score = 31.2 bits (69), Expect = 3.2 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Frame = +3
Query: 276 GSRDQVGSSFSVANGEAEGRMRYPPRTMSPGFYGLTG-EGNRAFTDRNFPPAEIGSSSSF 452 G ++G + + G YP SPG G G +G+ R PP + G S Sbjct: 349 GKLGRIGPPGCKGDPGSRGPDGYPGEAGSPGERGDQGAKGDSGRPGRRGPPGDPGDKGSK 408
Query: 453 GFQSHNG 473 G+Q +NG Sbjct: 409 GYQGNNG 415
>sp|Q6XQG8|CHST7_RAT Carbohydrate sulfotransferase 7 OS=Rattus norvegicus GN=Chst7 PE=2 SV=1 Length = 485
Score = 30.8 bits (68), Expect = 4.3 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = +1
Query: 226 KDKTVETMCPYITIRYLEAGTR*GPVFLLQMVRL 327 +DK E+ CP + +R LEA R PV +++ VRL Sbjct: 220 EDKACESTCPPVPLRALEAECRKYPVVVIKDVRL 253
>sp|Q8BZH4|POGZ_MOUSE Pogo transposable element with ZNF domain OS=Mus musculus GN=Pogz PE=1 SV=2 Length = 1409
Score = 30.4 bits (67), Expect = 5.5 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -3
Query: 244 FPQ-FCLFILCSICRLAICCKVSPTNTLLKGSLPR 143 FP F ++ CS+CR + CC + N ++ +PR Sbjct: 759 FPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPR 793
>sp|Q7Z3K3|POGZ_HUMAN Pogo transposable element with ZNF domain OS=Homo sapiens GN=POGZ PE=1 SV=2 Length = 1410
Score = 30.4 bits (67), Expect = 5.5 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -3
Query: 244 FPQ-FCLFILCSICRLAICCKVSPTNTLLKGSLPR 143 FP F ++ CS+CR + CC + N ++ +PR Sbjct: 763 FPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPR 797
>sp|Q9R159|ADA25_MOUSE ADAM 25 OS=Mus musculus GN=Adam25 PE=2 SV=1 Length = 760
Score = 30.4 bits (67), Expect = 5.5 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +2
Query: 92 SSCQHAYLY*RLGNIKCPRQRSLQKGICRGDFTTDG 199 S+C ++Y + KC R+ KGI RG DG Sbjct: 390 SNCSYSYYWATYATAKCMRKEKKSKGILRGKLCGDG 425
>sp|O94296|YOOC_SCHPO Probable phospholipid-transporting ATPase C887.12 OS=Schizosaccharomyces pombe GN=SPBC887.12 PE=2 SV=1 Length = 1258
Score = 30.0 bits (66), Expect = 7.2 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -3
Query: 226 FILCSICRLAICCKVSPTNTLL 161 F L S+CR ICC+VSP L Sbjct: 870 FELASLCRAVICCRVSPLQKAL 891
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja2 OS=Mus musculus GN=Pja2 PE=1 SV=2 Length = 707
Score = 29.6 bits (65), Expect = 9.4 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%) Frame = +3
Query: 246 NVSLHHDSIFGSRDQVG---SSFSVANGEAEGRMRYPPRTMSPGFYGLTGEGNRAFTDRN 416 ++ L +++ G R Q G + F + NGEAE +SP L GE + AF + + Sbjct: 179 SLQLGAEAVEGGRHQKGLGRAVFELENGEAEIYA-----DLSPSVPSLNGEISEAFEELD 233
Query: 417 FPPAEIGSSSSFGFQSHNGILLRSSVTESEIVHYPGSD 530 P E +SS ++E+VH G + Sbjct: 234 SAPLE-----------------KSSTADAELVHQNGQE 254
>sp|Q28084|CO4A3_BOVIN Collagen alpha-3(IV) chain (Fragment) OS=Bos taurus GN=COL4A3 PE=1 SV=1 Length = 471
Score = 29.6 bits (65), Expect = 9.4 Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 4/88 (4%) Frame = +3
Query: 276 GSRDQVGSSFSVANGEAEGRMRYPPRTMSPGFYGLTG----EGNRAFTDRNFPPAEIGSS 443 G +G S + A G P PGFYG G +GN F PP + G Sbjct: 80 GPPGAIGDMGSPGHPGAPGVPGQPGARGDPGFYGFPGMKGKKGNSGFPGPPGPPGQSGPK 139
Query: 444 SSFGFQSHNGILLRSSVTESEIVHYPGS 527 G + G + +I+ PGS Sbjct: 140 GPPGVRGEPGTV--------KIISLPGS 159
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B3DSF4 |
Definition |
tr|B3DSF4|B3DSF4_BIFLD Superfamily I DNA and RNA helicase OS=Bifidobacterium longum (strain DJO10A) |
Align length |
79 |
Score (bit) |
35.0 |
E-value |
2.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955556|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0023_G16, 5' (531 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B3DSF4|B3DSF4_BIFLD Superfamily I DNA and RNA helicase OS=Bif... 35 2.4 tr|P95959|P95959_SULSO Orf c04020 protein (Esterase, tropinester... 35 3.1 tr|Q9PEA9|Q9PEA9_XYLFA Putative uncharacterized protein OS=Xylel... 34 4.1 tr|A3XIG9|A3XIG9_9FLAO Deoxyribodipyrimidine photolyase-class I ... 34 5.3 tr|B6JWI4|B6JWI4_SCHJP Meiotic coiled-coil protein OS=Schizosacc... 34 5.3 tr|B5DPK7|B5DPK7_DROPS GA23508 OS=Drosophila pseudoobscura pseud... 33 6.9 tr|B3M053|B3M053_DROAN GF17761 OS=Drosophila ananassae GN=GF1776... 33 6.9 tr|B2ESX3|B2ESX3_9BACT Peptidase M56 BlaR1 OS=bacterium Ellin514... 33 9.0 tr|Q9VMV5|Q9VMV5_DROME Viking OS=Drosophila melanogaster GN=vkg ... 33 9.0 tr|O18407|O18407_DROME Collagen type IV alpha 2 OS=Drosophila me... 33 9.0 tr|B6KSC2|B6KSC2_TOXGO Putative uncharacterized protein OS=Toxop... 33 9.0
>tr|B3DSF4|B3DSF4_BIFLD Superfamily I DNA and RNA helicase OS=Bifidobacterium longum (strain DJO10A) GN=uvrD2 PE=4 SV=1 Length = 900
Score = 35.0 bits (79), Expect = 2.4 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +3
Query: 240 GNNVSLHHDSIFGSRDQVGSSFSVANGEAEGRMRYPPRTMSPGFY-GLTGEGNRAFTDRN 416 G+ S S +GSR + GSS+ G G Y R+ S G G + G+R+ + + Sbjct: 730 GSRGSSGSGSSYGSRSRYGSSY----GSGSGSSSYGSRSSSYGSRSGSSSYGSRSRSGSS 785
Query: 417 FPPAEIGSSSSFGFQSHNG 473 + + GS SS+G +S +G Sbjct: 786 YGSSGSGSRSSYGSRSRSG 804
>tr|P95959|P95959_SULSO Orf c04020 protein (Esterase, tropinesterase related protein) OS=Sulfolobus solfataricus GN=orf c04020 PE=4 SV=2 Length = 231
Score = 34.7 bits (78), Expect = 3.1 Identities = 17/71 (23%), Positives = 34/71 (47%) Frame = -2
Query: 440 ASNFSRWKISVSECSIAFACQAIKARGHGPGRVPHSPFSLTICNRKTGPYLVPASKYRIV 261 A ++ WK + + S+ A RGHG P+SP+++ + LV + V Sbjct: 7 AGSYKSWKFVIPKLSLDNTVVAYDLRGHGRSSTPNSPYNIEDHSNDLRRLLVQLGIEKPV 66
Query: 260 M*GHIVSTVLS 228 + GH + ++++ Sbjct: 67 LIGHSIGSLIA 77
>tr|Q9PEA9|Q9PEA9_XYLFA Putative uncharacterized protein OS=Xylella fastidiosa GN=XF_1119 PE=4 SV=1 Length = 128
Score = 34.3 bits (77), Expect = 4.1 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = -1
Query: 381 SSHKSQGTWSWEGTSFSLQPHHLQQKNWTL-PGPCFQISNRDVGTHCFHSFVFLFCV 214 SS +++ TWSW G+S H K TL GP + + C H++ F CV Sbjct: 50 SSIRTKATWSWIGSSSRSTHHRYVAKLTTLETGPINTKQSAHINCPCSHTYTFRECV 106
>tr|A3XIG9|A3XIG9_9FLAO Deoxyribodipyrimidine photolyase-class I OS=Leeuwenhoekiella blandensis MED217 GN=MED217_06467 PE=3 SV=1 Length = 434
Score = 33.9 bits (76), Expect = 5.3 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = +3
Query: 105 MPIYTEDWETLNALGRDPFRRVFVGETLQQMA-SLQIEHRIKRQNCGNNVSLHH 263 +PI+ D E LN L D R F+ ETLQ+M LQ +H G++++L+H Sbjct: 32 LPIFIFDKEILNELPEDDARVTFIFETLQKMRDELQEKH-------GSSIALYH 78
>tr|B6JWI4|B6JWI4_SCHJP Meiotic coiled-coil protein OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_00759 PE=4 SV=1 Length = 670
Score = 33.9 bits (76), Expect = 5.3 Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 8/105 (7%) Frame = +3
Query: 210 IEHRIKRQNCGNNVSLHHDSIFGSRDQVGSSFSVANGEAEGRMRYPPRTMSPGFYGLTGE 389 I R+NC N S RD S SV NG + PP SP LTG Sbjct: 175 ISDHFGRENCFN------PSSSSGRDNKLSLVSVQNGFWQSSTHAPPVAESPLSNSLTGS 228
Query: 390 GNRAFTDRNFPPA--------EIGSSSSFGFQSHNGILLRSSVTE 500 F R P+ ++ S FG Q ++G RS+ E Sbjct: 229 DTFPFRSRGAAPSVTAKPFSPQLVSPRGFGKQLYSGTTSRSNAFE 273
>tr|B5DPK7|B5DPK7_DROPS GA23508 OS=Drosophila pseudoobscura pseudoobscura GN=GA23508 PE=4 SV=1 Length = 441
Score = 33.5 bits (75), Expect = 6.9 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%) Frame = +3
Query: 93 PRVNMPIYTEDWETLNALGRDPFRRVFVGETLQQMASLQIEHRIKRQNCGNNVSLHHDSI 272 P ++P+ +D E + A GR P +G T QQ Q++H+ K+Q + H+ Sbjct: 286 PARDLPVTADDLEIIAATGRSPSSDSGLGMTQQQQQQQQLKHQ-KQQQHQHQQQQHYPPH 344
Query: 273 FGSRDQVG----SSFSVAN-GEAEGRMRYPPRTMSP 365 S +G +S S N G R +P + P Sbjct: 345 HASLRHLGGININSISSGNVGSVPVRHHHPHEQLGP 380
>tr|B3M053|B3M053_DROAN GF17761 OS=Drosophila ananassae GN=GF17761 PE=4 SV=1 Length = 2044
Score = 33.5 bits (75), Expect = 6.9 Identities = 28/103 (27%), Positives = 44/103 (42%) Frame = +3
Query: 165 RVFVGETLQQMASLQIEHRIKRQNCGNNVSLHHDSIFGSRDQVGSSFSVANGEAEGRMRY 344 ++ + ASL +H NC N+ S F + VGSS S+ + + Sbjct: 194 QIMSNSSTSSAASLLNQHN-NNSNCSNS------SNFSTASSVGSSISIGSNSSNSNSN- 245
Query: 345 PPRTMSPGFYGLTGEGNRAFTDRNFPPAEIGSSSSFGFQSHNG 473 + S G + L+ +G T R+ P + G SSS G H+G Sbjct: 246 DSNSSSGGTHSLSFKG----TGRHVPGSVNGVSSSVGASCHSG 284
>tr|B2ESX3|B2ESX3_9BACT Peptidase M56 BlaR1 OS=bacterium Ellin514 GN=CflavDRAFT_5522 PE=4 SV=1 Length = 771
Score = 33.1 bits (74), Expect = 9.0 Identities = 22/75 (29%), Positives = 33/75 (44%) Frame = -2
Query: 509 NFTFCN*TPQKNSIVGLKPKGTAASNFSRWKISVSECSIAFACQAIKARGHGPGRVPHSP 330 NFT N + + +SI+ + P G ++ R + S C A G+ PGR+ P Sbjct: 413 NFTLINRSQKSSSIIYIAPNGLCTNSLPRGTLFFSAC----------AEGYAPGRI--GP 460
Query: 329 FSLTICNRKTGPYLV 285 + NR G LV Sbjct: 461 INTRSSNRVEGLELV 475
>tr|Q9VMV5|Q9VMV5_DROME Viking OS=Drosophila melanogaster GN=vkg PE=2 SV=1 Length = 1940
Score = 33.1 bits (74), Expect = 9.0 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = +3
Query: 276 GSRDQVGSSFSVANGEA--EGRMRYPPRTMSPGFYGLTGE-GNRAFTDRNFPPAEIGSSS 446 G R VG S +G A +G + P PG +GL G+ G+R + P E G+ Sbjct: 1044 GQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQGRPGEPGAKG 1103
Query: 447 SFGFQSHNGI 476 G+ NGI Sbjct: 1104 LGGYPGRNGI 1113
>tr|O18407|O18407_DROME Collagen type IV alpha 2 OS=Drosophila melanogaster GN=vkg PE=1 SV=1 Length = 1761
Score = 33.1 bits (74), Expect = 9.0 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = +3
Query: 276 GSRDQVGSSFSVANGEA--EGRMRYPPRTMSPGFYGLTGE-GNRAFTDRNFPPAEIGSSS 446 G R VG S +G A +G + P PG +GL G+ G+R + P E G+ Sbjct: 1042 GQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQGRPGEPGAKG 1101
Query: 447 SFGFQSHNGI 476 G+ NGI Sbjct: 1102 LGGYPGRNGI 1111
|