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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955568
Clone id TST39A01NGRL0023_H05
Library
Length 641
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0023_H05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCATGAGCATCCGTGACTCTGTCCGCTTCCGTGTCGACTCCACAAATGGTATCAGAGCA
CTAGCTTTGTCTTGGGTAAAAAGCTCCTGGAAGGAAGAGTTTGAGCAGACAGGAAACAAA
GGGGGAGGCTCTGAGAGAGTTGGAAGAACAACCTTGTTGATCTCACTCTCTGCGGGGTTG
TCTTATTTCAGCTCCGACGGCTGTTGGTGGCACTACCACAACAATGCCCATGTAAGGGCG
GTTCAACCATCAATGCAGTGCCTAAGAGGGCAGCACTACCGACAAACAAGAGAAGGCCGG
CTAGGCTCAGGAGGCTGTCAGGGGCTCTGGGAGTAGACCAAGGGCACGATTGCAGGAGAA
GGCTCGTTCATGTAGGAGAAGGCAACAACAACACACAAGGAGTGGGGGTTTTGAGAGCAC
TGCAGAGGGGCGCCAGGCCTTGCACATGGCAGCTACATAAGCCTCAAGGGATCTCTACAG
TAAGCTTGCATGACGTCATAAGGTAGTACATGAGACAGGGGTCCATGCCTAGACCACGGA
TCAAGCTCGAGCCATGGTGCTGACAGAGTCGGCAGCGTGGTAGAGTGACGAGTCCATGTC
ATCACGGGATAAAGCTGCGAAGACCACGTGTGTGCTGCGCA
■■Homology search results ■■ -
sp_hit_id Q5FVJ4
Definition sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus
Align length 104
Score (bit) 32.3
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955568|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_H05, 5'
         (641 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus GN=...    32   2.1  
sp|Q8NC24|RELL2_HUMAN RELT-like protein 2 OS=Homo sapiens GN=REL...    32   3.7  
sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis glossi...    31   6.2  
sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=...    30   8.1  
sp|Q8BRJ3|RELL2_MOUSE RELT-like protein 2 OS=Mus musculus GN=Rel...    30   8.1  
sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment) OS=C...    30   8.1  

>sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus
           GN=Rell2 PE=2 SV=1
          Length = 302

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 32/104 (30%), Positives = 45/104 (43%)
 Frame = +1

Query: 124 GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREGRL 303
           G SE  G T  L S+ A  S    DG   H+H   H+ +  P + C R +     R+GR 
Sbjct: 94  GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCIHCSRSKRPPLVRQGRS 149

Query: 304 GSGGCQGLWE*TKGTIAGEGSFM*EKATTTHKEWGF*EHCRGAP 435
             G  +G     + T+   G F   + T   K +G  EH  G+P
Sbjct: 150 KEG--KGRPRPGETTVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|Q8NC24|RELL2_HUMAN RELT-like protein 2 OS=Homo sapiens GN=RELL2
           PE=1 SV=1
          Length = 303

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 32/104 (30%), Positives = 44/104 (42%)
 Frame = +1

Query: 124 GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREGRL 303
           G SE  G T  L S+ A  S    DG   H+H   H+ +  P + C R +     R+GR 
Sbjct: 94  GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCLHCSRSKRPPLVRQGRS 149

Query: 304 GSGGCQGLWE*TKGTIAGEGSFM*EKATTTHKEWGF*EHCRGAP 435
             G  +     T  T+   G F   + T   K +G  EH  G+P
Sbjct: 150 KEGKSRPRTGET--TVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis
           glossinidius (strain morsitans) GN=rplR PE=3 SV=1
          Length = 117

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 31  RVDSTNGIRAL-ALSWVKSSWKEEFEQTGNKGGGSERVGRTTLLISLSAGLSYFSSDGCW 207
           +V + NG   L A S V+ +  E+ + TGNK   +  VG+T  + +L  G+   S D   
Sbjct: 38  QVIAPNGSEVLVAASTVEKAIAEQLKGTGNKDAAAA-VGKTIAVRALEKGIKDVSFDRSG 96

Query: 208 WHYHNNAHVRA 240
           + YH      A
Sbjct: 97  FQYHGRVQALA 107


>sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=Mus
           musculus GN=Ssh1 PE=1 SV=1
          Length = 1042

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
 Frame = +3

Query: 90  EGRV*ADRKQRGRL*ESWKNNLVDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKR 269
           EG + A +++  +L   W+    D T+     F    L  AL  Q PC   +T   +P R
Sbjct: 444 EGILDASKQRHNKL---WRQQPTDDTIAEPSEFLPETLDGALDAQLPCLDDTTHPGLP-R 499

Query: 270 AALPTNKRRPARLRRLSGALGVDQGHDCRRRLVHVGE-------GNNNTQGVGVLRAL-- 422
           +  P     P   RRLS  L +   HD    LVH+ +           +Q V V + +  
Sbjct: 500 SLAPGGPALPCCFRRLSDPLLLPH-HDETGGLVHLEDLEKDALLEEEESQPVEVHKLVQH 558

Query: 423 -QRGARPC 443
            Q GAR C
Sbjct: 559 PQEGARLC 566


>sp|Q8BRJ3|RELL2_MOUSE RELT-like protein 2 OS=Mus musculus GN=Rell2
           PE=2 SV=1
          Length = 303

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 31/104 (29%), Positives = 44/104 (42%)
 Frame = +1

Query: 124 GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREGRL 303
           G SE  G T  L S+ A  S    DG   H+H   H+ +  P + C R +     R+GR 
Sbjct: 94  GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCIHCSRSKRPPLVRQGRS 149

Query: 304 GSGGCQGLWE*TKGTIAGEGSFM*EKATTTHKEWGF*EHCRGAP 435
             G  +      + T+   G F   + T   K +G  EH  G+P
Sbjct: 150 KEGKSRP--RPGETTVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment)
           OS=Canis familiaris GN=CUX1 PE=2 SV=1
          Length = 975

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 314 AVRGSGSRPRARLQEKARSCRRRQQQHTRSGG 409
           A RG   RP AR + + R  RRR+++H R GG
Sbjct: 857 AARGPSRRPGARAKPRRR--RRRRRRHARGGG 886
tr_hit_id B3K5R8
Definition tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR OS=Geobacillus sp. Y412MC10
Align length 112
Score (bit) 38.1
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955568|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0023_H05, 5'
         (641 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR O...    38   0.46 
tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein OS=Botry...    34   6.6  

>tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR
           OS=Geobacillus sp. Y412MC10 GN=GYMC10DRAFT_1005 PE=4
           SV=1
          Length = 260

 Score = 38.1 bits (87), Expect = 0.46
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
 Frame = +3

Query: 135 ESWKNNLVDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKRAALPTNKRRPARLRR 314
           ESW ++L DL L G + F       A+P      GG+ IN     A  P     P+ + R
Sbjct: 107 ESWASDL-DLKLFGAIRFSR----AAVPHLRNSGGGAIINVTTSWAKTPPASSMPSSVSR 161

Query: 315 LSG-ALGVDQGHDCRRRLVHVGEGNNNTQGVGVLRALQRGARPCTWQLHKPQ 467
            +G A+     HD  +  + V     NT  +G +R+ Q  AR   W+   P+
Sbjct: 162 AAGQAMTKAMSHDLAKDHIRV-----NTVCIGTIRSAQLEAR---WKRESPE 205


>tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_15625
           PE=4 SV=1
          Length = 371

 Score = 34.3 bits (77), Expect = 6.6
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = -1

Query: 176 PAESEINKVVLPT----LSEPPP---LFPVCSNSSFQELFTQDKASALIPFVESTRK 27
           P +   NK V+P     L EPPP   LFP  ++SSF +   ++  +AL P +  TR+
Sbjct: 148 PKKQRSNKQVVPPIIIGLHEPPPQAALFPPIASSSFHDSHGRNTLNALAPKITETRE 204